Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AF106564.1-201ENST00000607058 2553 ntBASIC11.73□□□□□ -0.53
HSPG2P98160 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC11.73□□□□□ -0.53
HSPG2P98160 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HSPG2P98160 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HSPG2P98160 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
HSPG2P98160 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
HSPG2P98160 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC11.73□□□□□ -0.53
HSPG2P98160 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HSPG2P98160 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC11.73□□□□□ -0.53
HSPG2P98160 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC11.73□□□□□ -0.53
HSPG2P98160 AL596442.2-201ENST00000610240 980 ntBASIC11.73□□□□□ -0.53
HSPG2P98160 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC11.73□□□□□ -0.53
HSPG2P98160 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HSPG2P98160 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
HSPG2P98160 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC11.73□□□□□ -0.53
HSPG2P98160 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HSPG2P98160 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC11.73□□□□□ -0.53
HSPG2P98160 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
HSPG2P98160 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC11.73□□□□□ -0.53
HSPG2P98160 GRAMD4P1-201ENST00000435181 1110 ntBASIC11.73□□□□□ -0.53
HSPG2P98160 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC11.73□□□□□ -0.53
HSPG2P98160 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HSPG2P98160 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
HSPG2P98160 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HSPG2P98160 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC11.73□□□□□ -0.53
HSPG2P98160 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HSPG2P98160 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
HSPG2P98160 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
HSPG2P98160 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HSPG2P98160 AC093909.1-201ENST00000504731 1122 ntBASIC11.72□□□□□ -0.53
HSPG2P98160 AC106028.4-201ENST00000614509 607 ntBASIC11.72□□□□□ -0.53
HSPG2P98160 ORC5-208ENST00000626700 344 ntTSL 3 BASIC11.72□□□□□ -0.53
HSPG2P98160 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
HSPG2P98160 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
HSPG2P98160 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HSPG2P98160 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
HSPG2P98160 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC11.72□□□□□ -0.53
HSPG2P98160 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
HSPG2P98160 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC11.72□□□□□ -0.53
HSPG2P98160 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC11.72□□□□□ -0.53
HSPG2P98160 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC11.72□□□□□ -0.53
HSPG2P98160 AC145285.3-201ENST00000564603 959 ntBASIC11.72□□□□□ -0.53
HSPG2P98160 AP001269.4-201ENST00000609611 512 ntBASIC11.72□□□□□ -0.53
HSPG2P98160 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC11.72□□□□□ -0.53
HSPG2P98160 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC11.72□□□□□ -0.53
HSPG2P98160 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HSPG2P98160 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HSPG2P98160 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HSPG2P98160 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
HSPG2P98160 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC11.72□□□□□ -0.53
HSPG2P98160 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC11.72□□□□□ -0.53
HSPG2P98160 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC11.72□□□□□ -0.53
HSPG2P98160 MIR3180-5-201ENST00000583743 153 ntBASIC11.72□□□□□ -0.53
HSPG2P98160 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC11.72□□□□□ -0.53
HSPG2P98160 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HSPG2P98160 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC11.72□□□□□ -0.53
HSPG2P98160 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
HSPG2P98160 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
HSPG2P98160 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
HSPG2P98160 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
HSPG2P98160 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
HSPG2P98160 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.53
HSPG2P98160 MOK-225ENST00000522867 1883 ntTSL 5 BASIC11.71□□□□□ -0.53
HSPG2P98160 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC11.71□□□□□ -0.53
HSPG2P98160 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC11.71□□□□□ -0.53
HSPG2P98160 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
HSPG2P98160 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.53
HSPG2P98160 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
HSPG2P98160 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
HSPG2P98160 BCRP1-201ENST00000444246 691 ntBASIC11.71□□□□□ -0.53
HSPG2P98160 RNA5SP415-201ENST00000517246 115 ntBASIC11.71□□□□□ -0.53
HSPG2P98160 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC11.71□□□□□ -0.53
HSPG2P98160 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC11.71□□□□□ -0.53
HSPG2P98160 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
HSPG2P98160 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
HSPG2P98160 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.53
HSPG2P98160 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
HSPG2P98160 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
HSPG2P98160 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
HSPG2P98160 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
HSPG2P98160 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
HSPG2P98160 CNN2P11-201ENST00000429351 262 ntBASIC11.71□□□□□ -0.53
HSPG2P98160 HS6ST1P1-201ENST00000481504 1234 ntBASIC11.71□□□□□ -0.53
HSPG2P98160 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC11.71□□□□□ -0.53
HSPG2P98160 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC11.71□□□□□ -0.53
HSPG2P98160 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC11.71□□□□□ -0.53
HSPG2P98160 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.54
HSPG2P98160 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.54
HSPG2P98160 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC11.71□□□□□ -0.54
HSPG2P98160 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC11.71□□□□□ -0.54
HSPG2P98160 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC11.71□□□□□ -0.54
HSPG2P98160 IGHGP-201ENST00000390555 1178 ntBASIC11.71□□□□□ -0.54
HSPG2P98160 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC11.71□□□□□ -0.54
HSPG2P98160 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC11.71□□□□□ -0.54
HSPG2P98160 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC11.71□□□□□ -0.54
HSPG2P98160 AC025062.2-201ENST00000605477 670 ntBASIC11.71□□□□□ -0.54
HSPG2P98160 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC11.71□□□□□ -0.54
HSPG2P98160 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
HSPG2P98160 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.54
HSPG2P98160 WWC2-AS2-201ENST00000578387 2183 ntBASIC11.71□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms