Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL4A4P53420 TOB2P1-201ENST00000469761 992 ntBASIC20.28■□□□□ 0.84
COL4A4P53420 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC20.28■□□□□ 0.84
COL4A4P53420 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
COL4A4P53420 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL4A4P53420 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC20.28■□□□□ 0.84
COL4A4P53420 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL4A4P53420 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC20.28■□□□□ 0.84
COL4A4P53420 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
COL4A4P53420 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC20.27■□□□□ 0.84
COL4A4P53420 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL4A4P53420 DRAXINP1-201ENST00000437611 948 ntBASIC20.27■□□□□ 0.84
COL4A4P53420 LINC00265-3P-201ENST00000447588 903 ntBASIC20.27■□□□□ 0.84
COL4A4P53420 SEC1P-202ENST00000473944 940 ntBASIC20.27■□□□□ 0.84
COL4A4P53420 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC20.27■□□□□ 0.84
COL4A4P53420 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC20.27■□□□□ 0.84
COL4A4P53420 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL4A4P53420 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL4A4P53420 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC20.27■□□□□ 0.84
COL4A4P53420 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC20.27■□□□□ 0.83
COL4A4P53420 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
COL4A4P53420 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
COL4A4P53420 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC20.27■□□□□ 0.83
COL4A4P53420 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC20.26■□□□□ 0.83
COL4A4P53420 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC20.26■□□□□ 0.83
COL4A4P53420 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL4A4P53420 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL4A4P53420 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC20.26■□□□□ 0.83
COL4A4P53420 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
COL4A4P53420 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC20.26■□□□□ 0.83
COL4A4P53420 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC20.26■□□□□ 0.83
COL4A4P53420 MPI-205ENST00000562606 1052 ntTSL 3 BASIC20.26■□□□□ 0.83
COL4A4P53420 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
COL4A4P53420 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC20.26■□□□□ 0.83
COL4A4P53420 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
COL4A4P53420 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL4A4P53420 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
COL4A4P53420 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL4A4P53420 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
COL4A4P53420 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL4A4P53420 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
COL4A4P53420 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL4A4P53420 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC20.26■□□□□ 0.83
COL4A4P53420 HLA-F-220ENST00000434407 884 ntBASIC20.26■□□□□ 0.83
COL4A4P53420 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
COL4A4P53420 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
COL4A4P53420 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
COL4A4P53420 AC104417.2-201ENST00000562989 1793 ntBASIC20.25■□□□□ 0.83
COL4A4P53420 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
COL4A4P53420 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
COL4A4P53420 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL4A4P53420 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL4A4P53420 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL4A4P53420 ZNF815P-204ENST00000434898 1737 ntBASIC20.25■□□□□ 0.83
COL4A4P53420 LINC00167-201ENST00000530583 1419 ntBASIC20.25■□□□□ 0.83
COL4A4P53420 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
COL4A4P53420 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
COL4A4P53420 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC20.25■□□□□ 0.83
COL4A4P53420 AC074051.2-201ENST00000565115 352 ntBASIC20.25■□□□□ 0.83
COL4A4P53420 AC011498.5-201ENST00000592027 486 ntBASIC20.25■□□□□ 0.83
COL4A4P53420 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
COL4A4P53420 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL4A4P53420 PWWP2AP1-201ENST00000429776 2273 ntBASIC20.25■□□□□ 0.83
COL4A4P53420 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL4A4P53420 GPAT2P1-201ENST00000444924 1672 ntBASIC20.24■□□□□ 0.83
COL4A4P53420 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL4A4P53420 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
COL4A4P53420 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL4A4P53420 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL4A4P53420 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC20.24■□□□□ 0.83
COL4A4P53420 TBCB-205ENST00000585746 875 ntTSL 3 BASIC20.24■□□□□ 0.83
COL4A4P53420 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC20.24■□□□□ 0.83
COL4A4P53420 AC079602.3-201ENST00000623931 403 ntBASIC20.24■□□□□ 0.83
COL4A4P53420 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC20.24■□□□□ 0.83
COL4A4P53420 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC20.24■□□□□ 0.83
COL4A4P53420 HLA-A-201ENST00000376802 1334 ntBASIC20.24■□□□□ 0.83
COL4A4P53420 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL4A4P53420 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC20.23■□□□□ 0.83
COL4A4P53420 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL4A4P53420 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL4A4P53420 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL4A4P53420 PENK-208ENST00000523051 772 ntTSL 5 BASIC20.23■□□□□ 0.83
COL4A4P53420 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL4A4P53420 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC20.23■□□□□ 0.83
COL4A4P53420 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC20.23■□□□□ 0.83
COL4A4P53420 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC20.23■□□□□ 0.83
COL4A4P53420 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC20.23■□□□□ 0.83
COL4A4P53420 TP73-AS1-207ENST00000624167 988 ntBASIC20.23■□□□□ 0.83
COL4A4P53420 AL157888.1-201ENST00000631930 593 ntBASIC20.23■□□□□ 0.83
COL4A4P53420 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL4A4P53420 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
COL4A4P53420 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
COL4A4P53420 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL4A4P53420 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL4A4P53420 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL4A4P53420 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
COL4A4P53420 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC20.23■□□□□ 0.83
COL4A4P53420 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
COL4A4P53420 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A4P53420 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms