Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
COL5A3P25940 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC23.88■■□□□ 1.41
COL5A3P25940 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC23.88■■□□□ 1.41
COL5A3P25940 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC23.88■■□□□ 1.41
COL5A3P25940 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
COL5A3P25940 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC23.88■■□□□ 1.41
COL5A3P25940 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC23.88■■□□□ 1.41
COL5A3P25940 SAPCD2P3-201ENST00000455031 850 ntBASIC23.88■■□□□ 1.41
COL5A3P25940 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
COL5A3P25940 AC091607.1-201ENST00000490318 1060 ntBASIC23.88■■□□□ 1.41
COL5A3P25940 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC23.88■■□□□ 1.41
COL5A3P25940 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC23.88■■□□□ 1.41
COL5A3P25940 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC23.88■■□□□ 1.41
COL5A3P25940 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
COL5A3P25940 Z82202.1-201ENST00000623446 1880 ntBASIC23.88■■□□□ 1.41
COL5A3P25940 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
COL5A3P25940 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC23.88■■□□□ 1.41
COL5A3P25940 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC23.88■■□□□ 1.41
COL5A3P25940 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC23.88■■□□□ 1.41
COL5A3P25940 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC23.88■■□□□ 1.41
COL5A3P25940 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
COL5A3P25940 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC23.87■■□□□ 1.41
COL5A3P25940 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC23.87■■□□□ 1.41
COL5A3P25940 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC23.87■■□□□ 1.41
COL5A3P25940 AL662844.1-201ENST00000546340 181 ntBASIC23.87■■□□□ 1.41
COL5A3P25940 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC23.87■■□□□ 1.41
COL5A3P25940 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC23.87■■□□□ 1.41
COL5A3P25940 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC23.87■■□□□ 1.41
COL5A3P25940 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
COL5A3P25940 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
COL5A3P25940 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC23.87■■□□□ 1.41
COL5A3P25940 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC23.87■■□□□ 1.41
COL5A3P25940 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC23.87■■□□□ 1.41
COL5A3P25940 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
COL5A3P25940 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC23.87■■□□□ 1.41
COL5A3P25940 PBK-203ENST00000522944 1499 ntTSL 2 BASIC23.87■■□□□ 1.41
COL5A3P25940 AL512353.2-201ENST00000448759 1962 ntBASIC23.87■■□□□ 1.41
COL5A3P25940 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
COL5A3P25940 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
COL5A3P25940 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
COL5A3P25940 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
COL5A3P25940 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC23.87■■□□□ 1.41
COL5A3P25940 IGHV3-47-201ENST00000425060 335 ntBASIC23.87■■□□□ 1.41
COL5A3P25940 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC23.87■■□□□ 1.41
COL5A3P25940 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC23.87■■□□□ 1.41
COL5A3P25940 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
COL5A3P25940 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
COL5A3P25940 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
COL5A3P25940 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
COL5A3P25940 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC23.87■■□□□ 1.41
COL5A3P25940 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC23.86■■□□□ 1.41
COL5A3P25940 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC23.86■■□□□ 1.41
COL5A3P25940 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
COL5A3P25940 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
COL5A3P25940 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC23.86■■□□□ 1.41
COL5A3P25940 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC23.86■■□□□ 1.41
COL5A3P25940 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC23.86■■□□□ 1.41
COL5A3P25940 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC23.86■■□□□ 1.41
COL5A3P25940 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC23.86■■□□□ 1.41
COL5A3P25940 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
COL5A3P25940 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC23.86■■□□□ 1.41
COL5A3P25940 GXYLT1P4-201ENST00000613576 1192 ntBASIC23.86■■□□□ 1.41
COL5A3P25940 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC23.86■■□□□ 1.41
COL5A3P25940 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC23.86■■□□□ 1.41
COL5A3P25940 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC23.86■■□□□ 1.41
COL5A3P25940 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC23.86■■□□□ 1.41
COL5A3P25940 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC23.85■■□□□ 1.41
COL5A3P25940 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC23.85■■□□□ 1.41
COL5A3P25940 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC23.85■■□□□ 1.41
COL5A3P25940 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
COL5A3P25940 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC23.85■■□□□ 1.41
COL5A3P25940 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
COL5A3P25940 PENK-208ENST00000523051 772 ntTSL 5 BASIC23.85■■□□□ 1.41
COL5A3P25940 AC090616.6-201ENST00000582640 721 ntBASIC23.85■■□□□ 1.41
COL5A3P25940 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC23.85■■□□□ 1.41
COL5A3P25940 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
COL5A3P25940 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC23.85■■□□□ 1.41
COL5A3P25940 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC23.85■■□□□ 1.41
COL5A3P25940 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
COL5A3P25940 NSUN5P1-202ENST00000421140 1535 ntBASIC23.85■■□□□ 1.41
COL5A3P25940 NSUN5P2-203ENST00000457352 1529 ntBASIC23.85■■□□□ 1.41
COL5A3P25940 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
COL5A3P25940 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC23.84■■□□□ 1.41
COL5A3P25940 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
COL5A3P25940 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC23.84■■□□□ 1.41
COL5A3P25940 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC23.84■■□□□ 1.41
COL5A3P25940 Z69720.1-201ENST00000601483 472 ntBASIC23.84■■□□□ 1.41
COL5A3P25940 AL353801.3-201ENST00000609898 542 ntBASIC23.84■■□□□ 1.41
COL5A3P25940 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
COL5A3P25940 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC23.84■■□□□ 1.41
COL5A3P25940 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
COL5A3P25940 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC23.84■■□□□ 1.41
COL5A3P25940 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
COL5A3P25940 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
COL5A3P25940 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC23.84■■□□□ 1.41
COL5A3P25940 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
COL5A3P25940 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
COL5A3P25940 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC23.84■■□□□ 1.41
COL5A3P25940 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
COL5A3P25940 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms