Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 RAB28P5-201ENST00000427490 651 ntBASIC2.73□□□□□ -1.97
PCDHA3Q9Y5H8 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC2.73□□□□□ -1.97
PCDHA3Q9Y5H8 AP001486.1-201ENST00000463339 476 ntBASIC2.73□□□□□ -1.97
PCDHA3Q9Y5H8 AL049873.1-201ENST00000480540 376 ntBASIC2.73□□□□□ -1.97
PCDHA3Q9Y5H8 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC2.73□□□□□ -1.97
PCDHA3Q9Y5H8 RNU6-965P-201ENST00000516721 96 ntBASIC2.73□□□□□ -1.97
PCDHA3Q9Y5H8 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.73□□□□□ -1.97
PCDHA3Q9Y5H8 MIR5092-201ENST00000583139 88 ntBASIC2.73□□□□□ -1.97
PCDHA3Q9Y5H8 U4atac.1-201ENST00000618345 95 ntBASIC2.73□□□□□ -1.97
PCDHA3Q9Y5H8 U6.104-201ENST00000637979 90 ntBASIC2.73□□□□□ -1.97
PCDHA3Q9Y5H8 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.73□□□□□ -1.97
PCDHA3Q9Y5H8 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
PCDHA3Q9Y5H8 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
PCDHA3Q9Y5H8 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.72□□□□□ -1.97
PCDHA3Q9Y5H8 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.72□□□□□ -1.97
PCDHA3Q9Y5H8 Y_RNA.193-201ENST00000363979 102 ntBASIC2.72□□□□□ -1.97
PCDHA3Q9Y5H8 SNORD87-201ENST00000364849 89 ntBASIC2.72□□□□□ -1.97
PCDHA3Q9Y5H8 Y_RNA.376-201ENST00000365638 108 ntBASIC2.72□□□□□ -1.97
PCDHA3Q9Y5H8 Y_RNA.570-201ENST00000384750 101 ntBASIC2.72□□□□□ -1.97
PCDHA3Q9Y5H8 MIR1302-6-201ENST00000408466 90 ntBASIC2.72□□□□□ -1.97
PCDHA3Q9Y5H8 MIR1283-1-201ENST00000408494 87 ntBASIC2.72□□□□□ -1.97
PCDHA3Q9Y5H8 RNU2-25P-201ENST00000411041 191 ntBASIC2.72□□□□□ -1.97
PCDHA3Q9Y5H8 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC2.72□□□□□ -1.97
PCDHA3Q9Y5H8 AC107083.1-201ENST00000439643 279 ntBASIC2.72□□□□□ -1.97
PCDHA3Q9Y5H8 AC104389.3-201ENST00000445629 235 ntBASIC2.72□□□□□ -1.97
PCDHA3Q9Y5H8 ATP5EP1-201ENST00000510257 156 ntBASIC2.72□□□□□ -1.97
PCDHA3Q9Y5H8 RNU1-117P-201ENST00000517041 158 ntBASIC2.72□□□□□ -1.97
PCDHA3Q9Y5H8 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC2.72□□□□□ -1.97
PCDHA3Q9Y5H8 AC005176.2-201ENST00000596933 147 ntBASIC2.72□□□□□ -1.97
PCDHA3Q9Y5H8 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
PCDHA3Q9Y5H8 MIR6073-201ENST00000352083 89 ntBASIC2.71□□□□□ -1.98
PCDHA3Q9Y5H8 RNU6-1305P-201ENST00000364353 104 ntBASIC2.71□□□□□ -1.98
PCDHA3Q9Y5H8 RNU6-702P-201ENST00000364982 107 ntBASIC2.71□□□□□ -1.98
PCDHA3Q9Y5H8 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC2.71□□□□□ -1.98
PCDHA3Q9Y5H8 RNU6-472P-201ENST00000384299 107 ntBASIC2.71□□□□□ -1.98
PCDHA3Q9Y5H8 RNU6-1026P-201ENST00000384465 108 ntBASIC2.71□□□□□ -1.98
PCDHA3Q9Y5H8 Y_RNA.581-201ENST00000391017 97 ntBASIC2.71□□□□□ -1.98
PCDHA3Q9Y5H8 AL139095.1-201ENST00000404326 391 ntBASIC2.71□□□□□ -1.98
PCDHA3Q9Y5H8 RNU2-20P-201ENST00000410425 191 ntBASIC2.71□□□□□ -1.98
PCDHA3Q9Y5H8 RPL21P38-201ENST00000418090 167 ntBASIC2.71□□□□□ -1.98
PCDHA3Q9Y5H8 HMGN2P18-201ENST00000450680 270 ntBASIC2.71□□□□□ -1.98
PCDHA3Q9Y5H8 AC016925.1-201ENST00000458303 298 ntBASIC2.71□□□□□ -1.98
PCDHA3Q9Y5H8 AC098869.1-201ENST00000481627 292 ntBASIC2.71□□□□□ -1.98
PCDHA3Q9Y5H8 AC018868.1-201ENST00000491307 315 ntBASIC2.71□□□□□ -1.98
PCDHA3Q9Y5H8 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC2.71□□□□□ -1.98
PCDHA3Q9Y5H8 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC2.71□□□□□ -1.98
PCDHA3Q9Y5H8 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.71□□□□□ -1.98
PCDHA3Q9Y5H8 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC2.71□□□□□ -1.98
PCDHA3Q9Y5H8 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.71□□□□□ -1.98
PCDHA3Q9Y5H8 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC2.71□□□□□ -1.98
PCDHA3Q9Y5H8 MIR3674-201ENST00000636576 68 ntBASIC2.71□□□□□ -1.98
PCDHA3Q9Y5H8 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.7□□□□□ -1.98
PCDHA3Q9Y5H8 RNU6-545P-201ENST00000362681 104 ntBASIC2.7□□□□□ -1.98
PCDHA3Q9Y5H8 snoU2_19.2-201ENST00000363024 80 ntBASIC2.7□□□□□ -1.98
PCDHA3Q9Y5H8 Y_RNA.518-201ENST00000384552 113 ntBASIC2.7□□□□□ -1.98
PCDHA3Q9Y5H8 AL357139.1-201ENST00000407792 426 ntBASIC2.7□□□□□ -1.98
PCDHA3Q9Y5H8 RNA5SP475-201ENST00000410568 110 ntBASIC2.7□□□□□ -1.98
PCDHA3Q9Y5H8 TOMM22P2-201ENST00000430735 237 ntBASIC2.7□□□□□ -1.98
PCDHA3Q9Y5H8 AC025750.2-201ENST00000442609 450 ntBASIC2.7□□□□□ -1.98
PCDHA3Q9Y5H8 HMGN2P9-201ENST00000476875 229 ntBASIC2.7□□□□□ -1.98
PCDHA3Q9Y5H8 SEPT14P8-201ENST00000508026 178 ntBASIC2.7□□□□□ -1.98
PCDHA3Q9Y5H8 Y_RNA.668-201ENST00000516233 93 ntBASIC2.7□□□□□ -1.98
PCDHA3Q9Y5H8 RNA5SP367-201ENST00000516557 118 ntBASIC2.7□□□□□ -1.98
PCDHA3Q9Y5H8 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC2.7□□□□□ -1.98
PCDHA3Q9Y5H8 AC022441.3-201ENST00000605737 136 ntBASIC2.7□□□□□ -1.98
PCDHA3Q9Y5H8 SNORD113-5-201ENST00000607261 78 ntBASIC2.7□□□□□ -1.98
PCDHA3Q9Y5H8 AC011373.1-201ENST00000607270 237 ntBASIC2.7□□□□□ -1.98
PCDHA3Q9Y5H8 NAA50-211ENST00000630058 177 ntTSL 5 BASIC2.7□□□□□ -1.98
PCDHA3Q9Y5H8 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
PCDHA3Q9Y5H8 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
PCDHA3Q9Y5H8 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
PCDHA3Q9Y5H8 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
PCDHA3Q9Y5H8 Y_RNA.84-201ENST00000363011 104 ntBASIC2.69□□□□□ -1.98
PCDHA3Q9Y5H8 SNORD113-8-201ENST00000363497 74 ntBASIC2.69□□□□□ -1.98
PCDHA3Q9Y5H8 SNORA80A-201ENST00000363922 136 ntBASIC2.69□□□□□ -1.98
PCDHA3Q9Y5H8 DEFA7P-201ENST00000382676 285 ntBASIC2.69□□□□□ -1.98
PCDHA3Q9Y5H8 Y_RNA.461-201ENST00000384263 103 ntBASIC2.69□□□□□ -1.98
PCDHA3Q9Y5H8 MIR548B-201ENST00000385247 97 ntBASIC2.69□□□□□ -1.98
PCDHA3Q9Y5H8 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC2.69□□□□□ -1.98
PCDHA3Q9Y5H8 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC2.69□□□□□ -1.98
PCDHA3Q9Y5H8 AC096920.1-201ENST00000423991 241 ntBASIC2.69□□□□□ -1.98
PCDHA3Q9Y5H8 AC114982.1-201ENST00000469402 321 ntBASIC2.69□□□□□ -1.98
PCDHA3Q9Y5H8 RNU6-496P-201ENST00000516145 99 ntBASIC2.69□□□□□ -1.98
PCDHA3Q9Y5H8 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC2.69□□□□□ -1.98
PCDHA3Q9Y5H8 MDM2-232ENST00000544561 213 ntTSL 5 BASIC2.69□□□□□ -1.98
PCDHA3Q9Y5H8 AC055872.1-201ENST00000570978 278 ntBASIC2.69□□□□□ -1.98
PCDHA3Q9Y5H8 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.69□□□□□ -1.98
PCDHA3Q9Y5H8 MIR4753-201ENST00000585119 83 ntBASIC2.69□□□□□ -1.98
PCDHA3Q9Y5H8 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC2.69□□□□□ -1.98
PCDHA3Q9Y5H8 AC004467.1-201ENST00000615678 330 ntBASIC2.69□□□□□ -1.98
PCDHA3Q9Y5H8 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
PCDHA3Q9Y5H8 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
PCDHA3Q9Y5H8 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
PCDHA3Q9Y5H8 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.68□□□□□ -1.98
PCDHA3Q9Y5H8 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.68□□□□□ -1.98
PCDHA3Q9Y5H8 SNORD81.1-201ENST00000363064 77 ntBASIC2.68□□□□□ -1.98
PCDHA3Q9Y5H8 SNORA5B-201ENST00000363786 132 ntBASIC2.68□□□□□ -1.98
PCDHA3Q9Y5H8 RNU6-1175P-201ENST00000365200 107 ntBASIC2.68□□□□□ -1.98
PCDHA3Q9Y5H8 SNORA25B-201ENST00000365507 128 ntBASIC2.68□□□□□ -1.98
PCDHA3Q9Y5H8 Y_RNA.396-201ENST00000383949 103 ntBASIC2.68□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 171.4 ms