Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC3.45□□□□□ -1.86
HIF3AQ9Y2N7 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC3.45□□□□□ -1.86
HIF3AQ9Y2N7 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.45□□□□□ -1.86
HIF3AQ9Y2N7 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.45□□□□□ -1.86
HIF3AQ9Y2N7 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
HIF3AQ9Y2N7 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.45□□□□□ -1.86
HIF3AQ9Y2N7 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
HIF3AQ9Y2N7 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
HIF3AQ9Y2N7 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
HIF3AQ9Y2N7 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
HIF3AQ9Y2N7 RNU6-647P-201ENST00000364243 107 ntBASIC3.44□□□□□ -1.86
HIF3AQ9Y2N7 RNU6-136P-201ENST00000384663 107 ntBASIC3.44□□□□□ -1.86
HIF3AQ9Y2N7 RNU1-101P-201ENST00000391171 127 ntBASIC3.44□□□□□ -1.86
HIF3AQ9Y2N7 SNORD65B-201ENST00000459126 73 ntBASIC3.44□□□□□ -1.86
HIF3AQ9Y2N7 RNA5SP164-201ENST00000516533 110 ntBASIC3.44□□□□□ -1.86
HIF3AQ9Y2N7 MIR2114-201ENST00000516645 80 ntBASIC3.44□□□□□ -1.86
HIF3AQ9Y2N7 AC103810.1-201ENST00000579873 453 ntBASIC3.44□□□□□ -1.86
HIF3AQ9Y2N7 MIR4765-201ENST00000585007 77 ntBASIC3.44□□□□□ -1.86
HIF3AQ9Y2N7 XIST_intron.1-201ENST00000619444 68 ntBASIC3.44□□□□□ -1.86
HIF3AQ9Y2N7 AC244205.2-202ENST00000635781 342 ntBASIC3.44□□□□□ -1.86
HIF3AQ9Y2N7 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
HIF3AQ9Y2N7 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.44□□□□□ -1.86
HIF3AQ9Y2N7 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.44□□□□□ -1.86
HIF3AQ9Y2N7 AC091152.2-201ENST00000591628 2569 ntBASIC3.44□□□□□ -1.86
HIF3AQ9Y2N7 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.43□□□□□ -1.86
HIF3AQ9Y2N7 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
HIF3AQ9Y2N7 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.43□□□□□ -1.86
HIF3AQ9Y2N7 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
HIF3AQ9Y2N7 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.86
HIF3AQ9Y2N7 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
HIF3AQ9Y2N7 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC3.43□□□□□ -1.86
HIF3AQ9Y2N7 RNU4-13P-201ENST00000364019 141 ntBASIC3.43□□□□□ -1.86
HIF3AQ9Y2N7 SNORA72-201ENST00000384339 132 ntBASIC3.43□□□□□ -1.86
HIF3AQ9Y2N7 RNA5SP354-201ENST00000391247 136 ntBASIC3.43□□□□□ -1.86
HIF3AQ9Y2N7 MIR1283-1-201ENST00000408494 87 ntBASIC3.43□□□□□ -1.86
HIF3AQ9Y2N7 RNA5SP317-201ENST00000410176 116 ntBASIC3.43□□□□□ -1.86
HIF3AQ9Y2N7 Y_RNA.617-201ENST00000410920 90 ntBASIC3.43□□□□□ -1.86
HIF3AQ9Y2N7 RNA5SP311-201ENST00000411290 116 ntBASIC3.43□□□□□ -1.86
HIF3AQ9Y2N7 RNU6-57P-201ENST00000411348 103 ntBASIC3.43□□□□□ -1.86
HIF3AQ9Y2N7 AC126124.2-201ENST00000413542 321 ntBASIC3.43□□□□□ -1.86
HIF3AQ9Y2N7 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC3.43□□□□□ -1.86
HIF3AQ9Y2N7 AC006028.1-201ENST00000438379 402 ntBASIC3.43□□□□□ -1.86
HIF3AQ9Y2N7 AC008155.2-201ENST00000464337 397 ntBASIC3.43□□□□□ -1.86
HIF3AQ9Y2N7 RPS29P24-201ENST00000486345 171 ntBASIC3.43□□□□□ -1.86
HIF3AQ9Y2N7 RAC1P2-201ENST00000511164 579 ntBASIC3.43□□□□□ -1.86
HIF3AQ9Y2N7 RNA5SP112-201ENST00000515937 99 ntBASIC3.43□□□□□ -1.86
HIF3AQ9Y2N7 RNA5SP20-201ENST00000515976 84 ntBASIC3.43□□□□□ -1.86
HIF3AQ9Y2N7 RN7SKP19-201ENST00000516016 252 ntBASIC3.43□□□□□ -1.86
HIF3AQ9Y2N7 RNA5SP315-201ENST00000516340 116 ntBASIC3.43□□□□□ -1.86
HIF3AQ9Y2N7 RNA5SP312-201ENST00000517068 116 ntBASIC3.43□□□□□ -1.86
HIF3AQ9Y2N7 MIR2116-201ENST00000517221 80 ntBASIC3.43□□□□□ -1.86
HIF3AQ9Y2N7 AC007224.1-201ENST00000564410 144 ntBASIC3.43□□□□□ -1.86
HIF3AQ9Y2N7 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.43□□□□□ -1.86
HIF3AQ9Y2N7 AL929325.1-201ENST00000603096 117 ntBASIC3.43□□□□□ -1.86
HIF3AQ9Y2N7 AC025166.1-201ENST00000612411 163 ntBASIC3.43□□□□□ -1.86
HIF3AQ9Y2N7 MIR6500-201ENST00000622700 86 ntBASIC3.43□□□□□ -1.86
HIF3AQ9Y2N7 AC090517.3-201ENST00000625170 141 ntBASIC3.43□□□□□ -1.86
HIF3AQ9Y2N7 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC3.43□□□□□ -1.86
HIF3AQ9Y2N7 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.43□□□□□ -1.86
HIF3AQ9Y2N7 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC3.42□□□□□ -1.86
HIF3AQ9Y2N7 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.42□□□□□ -1.86
HIF3AQ9Y2N7 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
HIF3AQ9Y2N7 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
HIF3AQ9Y2N7 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.42□□□□□ -1.86
HIF3AQ9Y2N7 RNU6-674P-201ENST00000363831 107 ntBASIC3.42□□□□□ -1.86
HIF3AQ9Y2N7 RNU6-271P-201ENST00000363858 105 ntBASIC3.42□□□□□ -1.86
HIF3AQ9Y2N7 SNORA14A-201ENST00000364773 135 ntBASIC3.42□□□□□ -1.86
HIF3AQ9Y2N7 AL603914.1-201ENST00000401964 204 ntBASIC3.42□□□□□ -1.86
HIF3AQ9Y2N7 MIR1294-201ENST00000408503 142 ntBASIC3.42□□□□□ -1.86
HIF3AQ9Y2N7 RNU6ATAC34P-201ENST00000408879 121 ntBASIC3.42□□□□□ -1.86
HIF3AQ9Y2N7 RNA5SP511-201ENST00000410487 115 ntBASIC3.42□□□□□ -1.86
HIF3AQ9Y2N7 AC016717.1-201ENST00000448918 286 ntBASIC3.42□□□□□ -1.86
HIF3AQ9Y2N7 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC3.42□□□□□ -1.86
HIF3AQ9Y2N7 RNU7-14P-201ENST00000459331 62 ntBASIC3.42□□□□□ -1.86
HIF3AQ9Y2N7 RNA5SP208-201ENST00000516156 78 ntBASIC3.42□□□□□ -1.86
HIF3AQ9Y2N7 RN7SKP21-201ENST00000516503 220 ntBASIC3.42□□□□□ -1.86
HIF3AQ9Y2N7 AC091178.2-201ENST00000584401 117 ntBASIC3.42□□□□□ -1.86
HIF3AQ9Y2N7 MIR4753-201ENST00000585119 83 ntBASIC3.42□□□□□ -1.86
HIF3AQ9Y2N7 RMST_8.1-201ENST00000610287 165 ntBASIC3.42□□□□□ -1.86
HIF3AQ9Y2N7 MIR8058-201ENST00000615737 89 ntBASIC3.42□□□□□ -1.86
HIF3AQ9Y2N7 CR392039.5-201ENST00000623201 510 ntBASIC3.42□□□□□ -1.86
HIF3AQ9Y2N7 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.42□□□□□ -1.86
HIF3AQ9Y2N7 GABRG2-229ENST00000641017 3628 ntBASIC3.42□□□□□ -1.86
HIF3AQ9Y2N7 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
HIF3AQ9Y2N7 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.41□□□□□ -1.86
HIF3AQ9Y2N7 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.41□□□□□ -1.86
HIF3AQ9Y2N7 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
HIF3AQ9Y2N7 SNORA57.1-201ENST00000391227 145 ntBASIC3.41□□□□□ -1.86
HIF3AQ9Y2N7 U6atac.2-201ENST00000408644 118 ntBASIC3.41□□□□□ -1.86
HIF3AQ9Y2N7 RNU2-55P-201ENST00000411146 174 ntBASIC3.41□□□□□ -1.86
HIF3AQ9Y2N7 RPL39P40-201ENST00000445481 146 ntBASIC3.41□□□□□ -1.86
HIF3AQ9Y2N7 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
HIF3AQ9Y2N7 AC083906.5-201ENST00000503722 328 ntBASIC3.41□□□□□ -1.86
HIF3AQ9Y2N7 RN7SKP83-201ENST00000516512 178 ntBASIC3.41□□□□□ -1.86
HIF3AQ9Y2N7 RPL23AP91-201ENST00000569211 455 ntBASIC3.41□□□□□ -1.86
HIF3AQ9Y2N7 ZYXP1-201ENST00000617638 118 ntBASIC3.41□□□□□ -1.86
HIF3AQ9Y2N7 5S_rRNA.13-201ENST00000622298 123 ntBASIC3.41□□□□□ -1.86
HIF3AQ9Y2N7 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.41□□□□□ -1.86
HIF3AQ9Y2N7 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
HIF3AQ9Y2N7 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC3.41□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 151 ms