Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 AL031003.1-201ENST00000404229 172 ntBASIC3.9□□□□□ -1.79
CCDC87Q9NVE4 RNU6-394P-201ENST00000410735 107 ntBASIC3.9□□□□□ -1.79
CCDC87Q9NVE4 RN7SKP51-201ENST00000410781 304 ntBASIC3.9□□□□□ -1.79
CCDC87Q9NVE4 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.9□□□□□ -1.79
CCDC87Q9NVE4 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC3.9□□□□□ -1.79
CCDC87Q9NVE4 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC3.9□□□□□ -1.79
CCDC87Q9NVE4 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC3.9□□□□□ -1.79
CCDC87Q9NVE4 RPL30P11-203ENST00000598995 310 ntBASIC3.9□□□□□ -1.79
CCDC87Q9NVE4 AC021753.1-201ENST00000635724 168 ntBASIC3.9□□□□□ -1.79
CCDC87Q9NVE4 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.9□□□□□ -1.79
CCDC87Q9NVE4 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.9□□□□□ -1.79
CCDC87Q9NVE4 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.9□□□□□ -1.79
CCDC87Q9NVE4 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.9□□□□□ -1.79
CCDC87Q9NVE4 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.89□□□□□ -1.79
CCDC87Q9NVE4 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3.89□□□□□ -1.79
CCDC87Q9NVE4 RNU6-486P-201ENST00000363116 107 ntBASIC3.89□□□□□ -1.79
CCDC87Q9NVE4 Y_RNA.170-201ENST00000363746 110 ntBASIC3.89□□□□□ -1.79
CCDC87Q9NVE4 Y_RNA.441-201ENST00000384123 112 ntBASIC3.89□□□□□ -1.79
CCDC87Q9NVE4 Y_RNA.637-201ENST00000459424 114 ntBASIC3.89□□□□□ -1.79
CCDC87Q9NVE4 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.89□□□□□ -1.79
CCDC87Q9NVE4 RN7SKP132-201ENST00000516001 208 ntBASIC3.89□□□□□ -1.79
CCDC87Q9NVE4 RNU6-1219P-201ENST00000516143 112 ntBASIC3.89□□□□□ -1.79
CCDC87Q9NVE4 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC3.89□□□□□ -1.79
CCDC87Q9NVE4 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.89□□□□□ -1.79
CCDC87Q9NVE4 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
CCDC87Q9NVE4 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
CCDC87Q9NVE4 AC062016.1-201ENST00000355719 319 ntBASIC3.88□□□□□ -1.79
CCDC87Q9NVE4 Y_RNA.7-201ENST00000362352 102 ntBASIC3.88□□□□□ -1.79
CCDC87Q9NVE4 Y_RNA.121-201ENST00000363309 113 ntBASIC3.88□□□□□ -1.79
CCDC87Q9NVE4 Y_RNA.571-201ENST00000384753 98 ntBASIC3.88□□□□□ -1.79
CCDC87Q9NVE4 MIR591-201ENST00000385290 95 ntBASIC3.88□□□□□ -1.79
CCDC87Q9NVE4 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC3.88□□□□□ -1.79
CCDC87Q9NVE4 KRTAP13-6P-201ENST00000508999 371 ntBASIC3.88□□□□□ -1.79
CCDC87Q9NVE4 HMGB3P3-201ENST00000510526 400 ntBASIC3.88□□□□□ -1.79
CCDC87Q9NVE4 MIR3144-201ENST00000579460 79 ntBASIC3.88□□□□□ -1.79
CCDC87Q9NVE4 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC3.88□□□□□ -1.79
CCDC87Q9NVE4 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.88□□□□□ -1.79
CCDC87Q9NVE4 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC3.88□□□□□ -1.79
CCDC87Q9NVE4 AC073325.2-201ENST00000339545 159 ntBASIC3.87□□□□□ -1.79
CCDC87Q9NVE4 SNORA19-201ENST00000384737 128 ntBASIC3.87□□□□□ -1.79
CCDC87Q9NVE4 TMSB4XP3-201ENST00000445144 114 ntBASIC3.87□□□□□ -1.79
CCDC87Q9NVE4 AC108938.1-201ENST00000451204 136 ntBASIC3.87□□□□□ -1.79
CCDC87Q9NVE4 AC083906.5-201ENST00000503722 328 ntBASIC3.87□□□□□ -1.79
CCDC87Q9NVE4 SNORA70.12-201ENST00000516084 153 ntBASIC3.87□□□□□ -1.79
CCDC87Q9NVE4 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC3.87□□□□□ -1.79
CCDC87Q9NVE4 AC132825.6-201ENST00000638861 357 ntBASIC3.87□□□□□ -1.79
CCDC87Q9NVE4 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.87□□□□□ -1.79
CCDC87Q9NVE4 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC3.87□□□□□ -1.79
CCDC87Q9NVE4 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
CCDC87Q9NVE4 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
CCDC87Q9NVE4 RNA5SP139-201ENST00000364340 117 ntBASIC3.86□□□□□ -1.79
CCDC87Q9NVE4 RNU6-312P-201ENST00000364629 107 ntBASIC3.86□□□□□ -1.79
CCDC87Q9NVE4 RNU4-17P-201ENST00000365598 141 ntBASIC3.86□□□□□ -1.79
CCDC87Q9NVE4 RNU6-763P-201ENST00000390865 106 ntBASIC3.86□□□□□ -1.79
CCDC87Q9NVE4 SNORA12-201ENST00000391162 147 ntBASIC3.86□□□□□ -1.79
CCDC87Q9NVE4 AL121890.1-201ENST00000435457 205 ntBASIC3.86□□□□□ -1.79
CCDC87Q9NVE4 AL109933.2-201ENST00000452651 260 ntBASIC3.86□□□□□ -1.79
CCDC87Q9NVE4 RNU7-200P-201ENST00000516105 62 ntBASIC3.86□□□□□ -1.79
CCDC87Q9NVE4 SCARNA11.3-201ENST00000517276 130 ntBASIC3.86□□□□□ -1.79
CCDC87Q9NVE4 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.86□□□□□ -1.79
CCDC87Q9NVE4 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.86□□□□□ -1.79
CCDC87Q9NVE4 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC3.86□□□□□ -1.79
CCDC87Q9NVE4 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.86□□□□□ -1.79
CCDC87Q9NVE4 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.86□□□□□ -1.79
CCDC87Q9NVE4 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.86□□□□□ -1.79
CCDC87Q9NVE4 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.86□□□□□ -1.79
CCDC87Q9NVE4 SNORD114-7-201ENST00000362520 77 ntBASIC3.85□□□□□ -1.79
CCDC87Q9NVE4 RNU6-1305P-201ENST00000364353 104 ntBASIC3.85□□□□□ -1.79
CCDC87Q9NVE4 Y_RNA.287-201ENST00000364853 94 ntBASIC3.85□□□□□ -1.79
CCDC87Q9NVE4 SNORD50.2-201ENST00000365465 70 ntBASIC3.85□□□□□ -1.79
CCDC87Q9NVE4 Y_RNA.361-201ENST00000365515 120 ntBASIC3.85□□□□□ -1.79
CCDC87Q9NVE4 AP002088.1-201ENST00000382740 395 ntBASIC3.85□□□□□ -1.79
CCDC87Q9NVE4 MIR184-201ENST00000384962 84 ntBASIC3.85□□□□□ -1.79
CCDC87Q9NVE4 MIR548B-201ENST00000385247 97 ntBASIC3.85□□□□□ -1.79
CCDC87Q9NVE4 MIR613-201ENST00000385248 95 ntBASIC3.85□□□□□ -1.79
CCDC87Q9NVE4 MIR300-201ENST00000401138 83 ntBASIC3.85□□□□□ -1.79
CCDC87Q9NVE4 AC009414.1-201ENST00000427200 443 ntBASIC3.85□□□□□ -1.79
CCDC87Q9NVE4 RNU5F-4P-201ENST00000516581 114 ntBASIC3.85□□□□□ -1.79
CCDC87Q9NVE4 SUMO2P18-201ENST00000518873 252 ntBASIC3.85□□□□□ -1.79
CCDC87Q9NVE4 MIR3186-201ENST00000577404 85 ntBASIC3.85□□□□□ -1.79
CCDC87Q9NVE4 MIR5047-201ENST00000579212 100 ntBASIC3.85□□□□□ -1.79
CCDC87Q9NVE4 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3.85□□□□□ -1.79
CCDC87Q9NVE4 U6.115-201ENST00000636045 103 ntBASIC3.85□□□□□ -1.79
CCDC87Q9NVE4 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC3.85□□□□□ -1.79
CCDC87Q9NVE4 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC87Q9NVE4 AC009487.2-201ENST00000420969 6821 ntBASIC3.85□□□□□ -1.79
CCDC87Q9NVE4 AC091152.2-201ENST00000591628 2569 ntBASIC3.85□□□□□ -1.79
CCDC87Q9NVE4 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.84□□□□□ -1.79
CCDC87Q9NVE4 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.84□□□□□ -1.79
CCDC87Q9NVE4 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.84□□□□□ -1.79
CCDC87Q9NVE4 RNU6-801P-201ENST00000364087 105 ntBASIC3.84□□□□□ -1.79
CCDC87Q9NVE4 Y_RNA.238-201ENST00000364441 102 ntBASIC3.84□□□□□ -1.79
CCDC87Q9NVE4 Y_RNA.368-201ENST00000365547 113 ntBASIC3.84□□□□□ -1.79
CCDC87Q9NVE4 RNU1-101P-201ENST00000391171 127 ntBASIC3.84□□□□□ -1.79
CCDC87Q9NVE4 RNU6-1135P-201ENST00000411083 103 ntBASIC3.84□□□□□ -1.79
CCDC87Q9NVE4 RNA5SP508-201ENST00000411327 119 ntBASIC3.84□□□□□ -1.79
CCDC87Q9NVE4 AL451074.5-201ENST00000415894 435 ntBASIC3.84□□□□□ -1.79
CCDC87Q9NVE4 AC074290.1-201ENST00000448883 135 ntBASIC3.84□□□□□ -1.79
CCDC87Q9NVE4 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC3.84□□□□□ -1.79
CCDC87Q9NVE4 AC091544.4-201ENST00000555268 342 ntBASIC3.84□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 107.5 ms