Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 SNORA8-201ENST00000384574 139 ntBASIC1.9□□□□□ -2.11
CHMP1AQ9HD42 Y_RNA.579-201ENST00000390939 94 ntBASIC1.9□□□□□ -2.11
CHMP1AQ9HD42 AC016909.1-201ENST00000415916 166 ntBASIC1.9□□□□□ -2.11
CHMP1AQ9HD42 AC114482.1-201ENST00000418010 247 ntBASIC1.9□□□□□ -2.11
CHMP1AQ9HD42 UBE2V1P7-201ENST00000446395 340 ntBASIC1.9□□□□□ -2.11
CHMP1AQ9HD42 ATP5J2P3-201ENST00000451550 258 ntBASIC1.9□□□□□ -2.11
CHMP1AQ9HD42 RNU6-221P-201ENST00000459541 99 ntBASIC1.9□□□□□ -2.11
CHMP1AQ9HD42 RN7SL636P-201ENST00000497504 294 ntBASIC1.9□□□□□ -2.11
CHMP1AQ9HD42 AC011406.1-201ENST00000512440 370 ntBASIC1.9□□□□□ -2.11
CHMP1AQ9HD42 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC1.9□□□□□ -2.11
CHMP1AQ9HD42 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC1.9□□□□□ -2.11
CHMP1AQ9HD42 AC005000.2-201ENST00000605468 310 ntBASIC1.9□□□□□ -2.11
CHMP1AQ9HD42 AC046143.2-201ENST00000609789 160 ntBASIC1.9□□□□□ -2.11
CHMP1AQ9HD42 SDR42E1P4-201ENST00000620894 481 ntBASIC1.9□□□□□ -2.11
CHMP1AQ9HD42 Six3os1_7.1-201ENST00000621512 201 ntBASIC1.9□□□□□ -2.11
CHMP1AQ9HD42 MIR6132-201ENST00000622083 109 ntBASIC1.9□□□□□ -2.11
CHMP1AQ9HD42 AC091932.3-201ENST00000624223 323 ntBASIC1.9□□□□□ -2.11
CHMP1AQ9HD42 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC1.9□□□□□ -2.11
CHMP1AQ9HD42 AC245060.5-201ENST00000610778 3293 ntBASIC1.9□□□□□ -2.11
CHMP1AQ9HD42 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
CHMP1AQ9HD42 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
CHMP1AQ9HD42 AP006437.1-201ENST00000641440 3685 ntBASIC1.89□□□□□ -2.11
CHMP1AQ9HD42 ZNF658B-202ENST00000615961 3375 ntBASIC1.89□□□□□ -2.11
CHMP1AQ9HD42 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC1.89□□□□□ -2.11
CHMP1AQ9HD42 RNA5SP138-201ENST00000365098 114 ntBASIC1.89□□□□□ -2.11
CHMP1AQ9HD42 SNORA70.4-201ENST00000365509 134 ntBASIC1.89□□□□□ -2.11
CHMP1AQ9HD42 Y_RNA.496-201ENST00000384444 101 ntBASIC1.89□□□□□ -2.11
CHMP1AQ9HD42 SNORA67.4-201ENST00000384688 142 ntBASIC1.89□□□□□ -2.11
CHMP1AQ9HD42 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
CHMP1AQ9HD42 MIR1185-2-201ENST00000408687 86 ntBASIC1.89□□□□□ -2.11
CHMP1AQ9HD42 ELOCP21-201ENST00000412558 336 ntBASIC1.89□□□□□ -2.11
CHMP1AQ9HD42 AC074290.1-201ENST00000448883 135 ntBASIC1.89□□□□□ -2.11
CHMP1AQ9HD42 CHEK2P4-201ENST00000450340 246 ntBASIC1.89□□□□□ -2.11
CHMP1AQ9HD42 RNU6-717P-201ENST00000459076 104 ntBASIC1.89□□□□□ -2.11
CHMP1AQ9HD42 RNU7-169P-201ENST00000459456 61 ntBASIC1.89□□□□□ -2.11
CHMP1AQ9HD42 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC1.89□□□□□ -2.11
CHMP1AQ9HD42 RN7SKP49-201ENST00000516675 260 ntBASIC1.89□□□□□ -2.11
CHMP1AQ9HD42 RNU7-4P-201ENST00000516961 62 ntBASIC1.89□□□□□ -2.11
CHMP1AQ9HD42 AC025647.1-201ENST00000517879 253 ntBASIC1.89□□□□□ -2.11
CHMP1AQ9HD42 SUMO2P18-201ENST00000518873 252 ntBASIC1.89□□□□□ -2.11
CHMP1AQ9HD42 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC1.89□□□□□ -2.11
CHMP1AQ9HD42 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.89□□□□□ -2.11
CHMP1AQ9HD42 MIR4287-201ENST00000579398 78 ntBASIC1.89□□□□□ -2.11
CHMP1AQ9HD42 AL133255.1-201ENST00000606374 441 ntBASIC1.89□□□□□ -2.11
CHMP1AQ9HD42 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC1.89□□□□□ -2.11
CHMP1AQ9HD42 U2.15-201ENST00000611544 191 ntBASIC1.89□□□□□ -2.11
CHMP1AQ9HD42 U2.16-201ENST00000613119 191 ntBASIC1.89□□□□□ -2.11
CHMP1AQ9HD42 U2.12-201ENST00000613778 191 ntBASIC1.89□□□□□ -2.11
CHMP1AQ9HD42 U2.20-201ENST00000613956 192 ntBASIC1.89□□□□□ -2.11
CHMP1AQ9HD42 AL773524.1-201ENST00000614065 229 ntBASIC1.89□□□□□ -2.11
CHMP1AQ9HD42 U2.9-201ENST00000615427 191 ntBASIC1.89□□□□□ -2.11
CHMP1AQ9HD42 U2.11-201ENST00000616345 191 ntBASIC1.89□□□□□ -2.11
CHMP1AQ9HD42 U2.2-201ENST00000616535 191 ntBASIC1.89□□□□□ -2.11
CHMP1AQ9HD42 U2.3-201ENST00000617785 191 ntBASIC1.89□□□□□ -2.11
CHMP1AQ9HD42 U2.19-201ENST00000618602 191 ntBASIC1.89□□□□□ -2.11
CHMP1AQ9HD42 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.89□□□□□ -2.11
CHMP1AQ9HD42 RNU2-1-201ENST00000618664 191 ntBASIC1.89□□□□□ -2.11
CHMP1AQ9HD42 U2.6-201ENST00000619225 191 ntBASIC1.89□□□□□ -2.11
CHMP1AQ9HD42 U2.5-201ENST00000619465 191 ntBASIC1.89□□□□□ -2.11
CHMP1AQ9HD42 U2.10-201ENST00000620268 191 ntBASIC1.89□□□□□ -2.11
CHMP1AQ9HD42 U1.36-201ENST00000620684 176 ntBASIC1.89□□□□□ -2.11
CHMP1AQ9HD42 AC006001.4-201ENST00000622243 395 ntBASIC1.89□□□□□ -2.11
CHMP1AQ9HD42 AC091925.1-201ENST00000623204 462 ntBASIC1.89□□□□□ -2.11
CHMP1AQ9HD42 Y_RNA.5-201ENST00000362334 102 ntBASIC1.88□□□□□ -2.11
CHMP1AQ9HD42 RNU6-862P-201ENST00000362804 105 ntBASIC1.88□□□□□ -2.11
CHMP1AQ9HD42 RNU4-42P-201ENST00000364738 142 ntBASIC1.88□□□□□ -2.11
CHMP1AQ9HD42 Y_RNA.314-201ENST00000365114 102 ntBASIC1.88□□□□□ -2.11
CHMP1AQ9HD42 Y_RNA.419-201ENST00000384041 102 ntBASIC1.88□□□□□ -2.11
CHMP1AQ9HD42 Y_RNA.595-201ENST00000410403 105 ntBASIC1.88□□□□□ -2.11
CHMP1AQ9HD42 MTND4P28-201ENST00000426217 387 ntBASIC1.88□□□□□ -2.11
CHMP1AQ9HD42 AC099799.1-201ENST00000439809 192 ntBASIC1.88□□□□□ -2.11
CHMP1AQ9HD42 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC1.88□□□□□ -2.11
CHMP1AQ9HD42 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC1.88□□□□□ -2.11
CHMP1AQ9HD42 RNU1-40P-201ENST00000516816 164 ntBASIC1.88□□□□□ -2.11
CHMP1AQ9HD42 RNU1-97P-201ENST00000516872 164 ntBASIC1.88□□□□□ -2.11
CHMP1AQ9HD42 SUB1P4-201ENST00000566062 339 ntBASIC1.88□□□□□ -2.11
CHMP1AQ9HD42 MIR5007-201ENST00000583098 95 ntBASIC1.88□□□□□ -2.11
CHMP1AQ9HD42 AC104985.2-201ENST00000620598 500 ntBASIC1.88□□□□□ -2.11
CHMP1AQ9HD42 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
CHMP1AQ9HD42 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.88□□□□□ -2.11
CHMP1AQ9HD42 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.88□□□□□ -2.11
CHMP1AQ9HD42 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.88□□□□□ -2.11
CHMP1AQ9HD42 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.87□□□□□ -2.11
CHMP1AQ9HD42 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
CHMP1AQ9HD42 RNA5SP100-201ENST00000410903 110 ntBASIC1.87□□□□□ -2.11
CHMP1AQ9HD42 RNA5SP59-201ENST00000410922 110 ntBASIC1.87□□□□□ -2.11
CHMP1AQ9HD42 AC022028.1-201ENST00000412054 408 ntBASIC1.87□□□□□ -2.11
CHMP1AQ9HD42 AC096644.2-201ENST00000429278 159 ntBASIC1.87□□□□□ -2.11
CHMP1AQ9HD42 HMGN2P34-201ENST00000437647 269 ntBASIC1.87□□□□□ -2.11
CHMP1AQ9HD42 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC1.87□□□□□ -2.11
CHMP1AQ9HD42 AC027575.1-201ENST00000481064 460 ntBASIC1.87□□□□□ -2.11
CHMP1AQ9HD42 YWHAEP4-201ENST00000505390 198 ntBASIC1.87□□□□□ -2.11
CHMP1AQ9HD42 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.87□□□□□ -2.11
CHMP1AQ9HD42 MIR2355-201ENST00000517199 87 ntBASIC1.87□□□□□ -2.11
CHMP1AQ9HD42 AC144568.1-201ENST00000520139 137 ntBASIC1.87□□□□□ -2.11
CHMP1AQ9HD42 EIF4BP1-201ENST00000554881 351 ntBASIC1.87□□□□□ -2.11
CHMP1AQ9HD42 MIR4299-201ENST00000577899 72 ntBASIC1.87□□□□□ -2.11
CHMP1AQ9HD42 MIR5094-201ENST00000578766 85 ntBASIC1.87□□□□□ -2.11
CHMP1AQ9HD42 AL109918.3-201ENST00000603072 338 ntBASIC1.87□□□□□ -2.11
CHMP1AQ9HD42 AL033523.1-201ENST00000605153 153 ntBASIC1.87□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 150.2 ms