Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 LINC02555-201ENST00000563933 1951 ntBASIC1.89□□□□□ -2.11
CCDC3Q9BQI4 MTND4P1-201ENST00000457501 1466 ntBASIC1.88□□□□□ -2.11
CCDC3Q9BQI4 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.88□□□□□ -2.11
CCDC3Q9BQI4 RNU1-58P-201ENST00000362413 163 ntBASIC1.88□□□□□ -2.11
CCDC3Q9BQI4 RNU6-1026P-201ENST00000384465 108 ntBASIC1.88□□□□□ -2.11
CCDC3Q9BQI4 RNU6-541P-201ENST00000384709 110 ntBASIC1.88□□□□□ -2.11
CCDC3Q9BQI4 MIR487A-201ENST00000385009 80 ntBASIC1.88□□□□□ -2.11
CCDC3Q9BQI4 MIR10B-201ENST00000385011 110 ntBASIC1.88□□□□□ -2.11
CCDC3Q9BQI4 WARS2P1-201ENST00000429678 537 ntBASIC1.88□□□□□ -2.11
CCDC3Q9BQI4 MTND3P23-201ENST00000431980 347 ntBASIC1.88□□□□□ -2.11
CCDC3Q9BQI4 MTCO3P29-201ENST00000432119 779 ntBASIC1.88□□□□□ -2.11
CCDC3Q9BQI4 AC236972.2-201ENST00000434979 310 ntBASIC1.88□□□□□ -2.11
CCDC3Q9BQI4 UBE2V1P7-201ENST00000446395 340 ntBASIC1.88□□□□□ -2.11
CCDC3Q9BQI4 RNA5SP233-201ENST00000459153 113 ntBASIC1.88□□□□□ -2.11
CCDC3Q9BQI4 Y_RNA.632-201ENST00000459189 102 ntBASIC1.88□□□□□ -2.11
CCDC3Q9BQI4 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.88□□□□□ -2.11
CCDC3Q9BQI4 RNU6-470P-201ENST00000515954 104 ntBASIC1.88□□□□□ -2.11
CCDC3Q9BQI4 RNU6-264P-201ENST00000517134 104 ntBASIC1.88□□□□□ -2.11
CCDC3Q9BQI4 RAB11AP2-201ENST00000545905 639 ntBASIC1.88□□□□□ -2.11
CCDC3Q9BQI4 AC090617.3-201ENST00000573670 475 ntBASIC1.88□□□□□ -2.11
CCDC3Q9BQI4 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC1.88□□□□□ -2.11
CCDC3Q9BQI4 MIR5089-201ENST00000580047 84 ntBASIC1.88□□□□□ -2.11
CCDC3Q9BQI4 AC007229.1-201ENST00000590455 412 ntBASIC1.88□□□□□ -2.11
CCDC3Q9BQI4 AP000942.3-201ENST00000603702 160 ntBASIC1.88□□□□□ -2.11
CCDC3Q9BQI4 SNRPGP19-201ENST00000603826 189 ntBASIC1.88□□□□□ -2.11
CCDC3Q9BQI4 AC080078.3-201ENST00000605407 463 ntBASIC1.88□□□□□ -2.11
CCDC3Q9BQI4 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
CCDC3Q9BQI4 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
CCDC3Q9BQI4 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
CCDC3Q9BQI4 AC008555.8-201ENST00000623602 2168 ntBASIC1.88□□□□□ -2.11
CCDC3Q9BQI4 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
CCDC3Q9BQI4 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC1.87□□□□□ -2.11
CCDC3Q9BQI4 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.87□□□□□ -2.11
CCDC3Q9BQI4 Y_RNA.187-201ENST00000363918 113 ntBASIC1.87□□□□□ -2.11
CCDC3Q9BQI4 RNU6-743P-201ENST00000364151 106 ntBASIC1.87□□□□□ -2.11
CCDC3Q9BQI4 RNU6-867P-201ENST00000364956 107 ntBASIC1.87□□□□□ -2.11
CCDC3Q9BQI4 Y_RNA.356-201ENST00000365475 113 ntBASIC1.87□□□□□ -2.11
CCDC3Q9BQI4 RNU6-281P-201ENST00000384212 103 ntBASIC1.87□□□□□ -2.11
CCDC3Q9BQI4 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.87□□□□□ -2.11
CCDC3Q9BQI4 AC096920.1-201ENST00000423991 241 ntBASIC1.87□□□□□ -2.11
CCDC3Q9BQI4 EIF1P2-201ENST00000428233 350 ntBASIC1.87□□□□□ -2.11
CCDC3Q9BQI4 RPL23AP7-203ENST00000449021 469 ntBASIC1.87□□□□□ -2.11
CCDC3Q9BQI4 AC114982.1-201ENST00000469402 321 ntBASIC1.87□□□□□ -2.11
CCDC3Q9BQI4 AP000870.1-201ENST00000472927 406 ntBASIC1.87□□□□□ -2.11
CCDC3Q9BQI4 AC079804.2-201ENST00000490376 200 ntBASIC1.87□□□□□ -2.11
CCDC3Q9BQI4 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC1.87□□□□□ -2.11
CCDC3Q9BQI4 RNU6-1213P-201ENST00000517075 94 ntBASIC1.87□□□□□ -2.11
CCDC3Q9BQI4 RRN3P3-201ENST00000549207 578 ntBASIC1.87□□□□□ -2.11
CCDC3Q9BQI4 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.87□□□□□ -2.11
CCDC3Q9BQI4 AC004584.2-201ENST00000570407 410 ntBASIC1.87□□□□□ -2.11
CCDC3Q9BQI4 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC1.87□□□□□ -2.11
CCDC3Q9BQI4 CYP2C61P-201ENST00000604072 290 ntBASIC1.87□□□□□ -2.11
CCDC3Q9BQI4 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.87□□□□□ -2.11
CCDC3Q9BQI4 SNORD11B-201ENST00000607707 90 ntBASIC1.87□□□□□ -2.11
CCDC3Q9BQI4 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC1.87□□□□□ -2.11
CCDC3Q9BQI4 AC126177.8-201ENST00000618339 1015 ntBASIC1.87□□□□□ -2.11
CCDC3Q9BQI4 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC1.87□□□□□ -2.11
CCDC3Q9BQI4 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.87□□□□□ -2.11
CCDC3Q9BQI4 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
CCDC3Q9BQI4 MTND5P10-201ENST00000603719 1809 ntBASIC1.87□□□□□ -2.11
CCDC3Q9BQI4 RNU6-490P-201ENST00000362985 107 ntBASIC1.86□□□□□ -2.11
CCDC3Q9BQI4 RNU4-73P-201ENST00000363164 141 ntBASIC1.86□□□□□ -2.11
CCDC3Q9BQI4 Y_RNA.106-201ENST00000363189 100 ntBASIC1.86□□□□□ -2.11
CCDC3Q9BQI4 RNU6-873P-201ENST00000363833 107 ntBASIC1.86□□□□□ -2.11
CCDC3Q9BQI4 Y_RNA.259-201ENST00000364619 101 ntBASIC1.86□□□□□ -2.11
CCDC3Q9BQI4 RNU6-890P-201ENST00000384121 107 ntBASIC1.86□□□□□ -2.11
CCDC3Q9BQI4 RNU2-40P-201ENST00000410833 196 ntBASIC1.86□□□□□ -2.11
CCDC3Q9BQI4 AC022028.1-201ENST00000412054 408 ntBASIC1.86□□□□□ -2.11
CCDC3Q9BQI4 AF228730.4-201ENST00000421457 183 ntBASIC1.86□□□□□ -2.11
CCDC3Q9BQI4 USP9YP16-201ENST00000430287 407 ntBASIC1.86□□□□□ -2.11
CCDC3Q9BQI4 USP9YP23-201ENST00000455085 407 ntBASIC1.86□□□□□ -2.11
CCDC3Q9BQI4 MTCO3P10-201ENST00000455912 772 ntBASIC1.86□□□□□ -2.11
CCDC3Q9BQI4 RNU6-717P-201ENST00000459076 104 ntBASIC1.86□□□□□ -2.11
CCDC3Q9BQI4 RNU6-948P-201ENST00000516374 107 ntBASIC1.86□□□□□ -2.11
CCDC3Q9BQI4 SNORA25.14-201ENST00000516481 132 ntBASIC1.86□□□□□ -2.11
CCDC3Q9BQI4 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC1.86□□□□□ -2.11
CCDC3Q9BQI4 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC1.86□□□□□ -2.11
CCDC3Q9BQI4 AL096840.1-201ENST00000603287 93 ntBASIC1.86□□□□□ -2.11
CCDC3Q9BQI4 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.86□□□□□ -2.11
CCDC3Q9BQI4 AC068205.3-201ENST00000636385 468 ntBASIC1.86□□□□□ -2.11
CCDC3Q9BQI4 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.86□□□□□ -2.11
CCDC3Q9BQI4 AC112487.2-201ENST00000637950 304 ntBASIC1.86□□□□□ -2.11
CCDC3Q9BQI4 Y_RNA.132-201ENST00000363421 102 ntBASIC1.85□□□□□ -2.11
CCDC3Q9BQI4 RNU6-1040P-201ENST00000383974 107 ntBASIC1.85□□□□□ -2.11
CCDC3Q9BQI4 RNU6-793P-201ENST00000384233 104 ntBASIC1.85□□□□□ -2.11
CCDC3Q9BQI4 RNU6-975P-201ENST00000384296 105 ntBASIC1.85□□□□□ -2.11
CCDC3Q9BQI4 RNU6-1235P-201ENST00000384559 107 ntBASIC1.85□□□□□ -2.11
CCDC3Q9BQI4 Y_RNA.604-201ENST00000410574 102 ntBASIC1.85□□□□□ -2.11
CCDC3Q9BQI4 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC1.85□□□□□ -2.11
CCDC3Q9BQI4 RPL23AP50-201ENST00000434149 455 ntBASIC1.85□□□□□ -2.11
CCDC3Q9BQI4 AC003989.2-201ENST00000440224 169 ntBASIC1.85□□□□□ -2.11
CCDC3Q9BQI4 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC1.85□□□□□ -2.11
CCDC3Q9BQI4 AC074290.1-201ENST00000448883 135 ntBASIC1.85□□□□□ -2.11
CCDC3Q9BQI4 RNU6-498P-201ENST00000459468 107 ntBASIC1.85□□□□□ -2.11
CCDC3Q9BQI4 HMGN2P9-201ENST00000476875 229 ntBASIC1.85□□□□□ -2.11
CCDC3Q9BQI4 RNU7-4P-201ENST00000516961 62 ntBASIC1.85□□□□□ -2.11
CCDC3Q9BQI4 MIR3169-201ENST00000578032 83 ntBASIC1.85□□□□□ -2.11
CCDC3Q9BQI4 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.85□□□□□ -2.11
CCDC3Q9BQI4 MIR4753-201ENST00000585119 83 ntBASIC1.85□□□□□ -2.11
CCDC3Q9BQI4 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC1.85□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 91.8 ms