Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 AC007318.2-201ENST00000620999 243 ntBASIC3.06□□□□□ -1.92
CHFRQ96EP1 SNORA43.4-201ENST00000629559 138 ntBASIC3.06□□□□□ -1.92
CHFRQ96EP1 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
CHFRQ96EP1 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC3.05□□□□□ -1.92
CHFRQ96EP1 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
CHFRQ96EP1 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
CHFRQ96EP1 Y_RNA.245-201ENST00000364493 95 ntBASIC3.05□□□□□ -1.92
CHFRQ96EP1 U8.9-201ENST00000365667 134 ntBASIC3.05□□□□□ -1.92
CHFRQ96EP1 RNU6-541P-201ENST00000384709 110 ntBASIC3.05□□□□□ -1.92
CHFRQ96EP1 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.05□□□□□ -1.92
CHFRQ96EP1 EBAG9P1-201ENST00000418955 543 ntBASIC3.05□□□□□ -1.92
CHFRQ96EP1 AC243964.1-201ENST00000441814 261 ntBASIC3.05□□□□□ -1.92
CHFRQ96EP1 AL078601.1-201ENST00000444542 271 ntBASIC3.05□□□□□ -1.92
CHFRQ96EP1 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC3.05□□□□□ -1.92
CHFRQ96EP1 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC3.05□□□□□ -1.92
CHFRQ96EP1 AC016925.1-201ENST00000458303 298 ntBASIC3.05□□□□□ -1.92
CHFRQ96EP1 KC877373.1-201ENST00000479066 408 ntBASIC3.05□□□□□ -1.92
CHFRQ96EP1 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.05□□□□□ -1.92
CHFRQ96EP1 RN7SL20P-201ENST00000488827 297 ntBASIC3.05□□□□□ -1.92
CHFRQ96EP1 CYCTP-201ENST00000504253 315 ntBASIC3.05□□□□□ -1.92
CHFRQ96EP1 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC3.05□□□□□ -1.92
CHFRQ96EP1 RNU6-659P-201ENST00000516454 104 ntBASIC3.05□□□□□ -1.92
CHFRQ96EP1 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.05□□□□□ -1.92
CHFRQ96EP1 AC110491.1-201ENST00000562191 2010 ntBASIC3.05□□□□□ -1.92
CHFRQ96EP1 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
CHFRQ96EP1 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.05□□□□□ -1.92
CHFRQ96EP1 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.04□□□□□ -1.92
CHFRQ96EP1 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
CHFRQ96EP1 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.04□□□□□ -1.92
CHFRQ96EP1 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
CHFRQ96EP1 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
CHFRQ96EP1 RNU6-899P-201ENST00000363947 107 ntBASIC3.04□□□□□ -1.92
CHFRQ96EP1 MIR539-201ENST00000365690 78 ntBASIC3.04□□□□□ -1.92
CHFRQ96EP1 Y_RNA.420-201ENST00000384043 110 ntBASIC3.04□□□□□ -1.92
CHFRQ96EP1 RNU6-301P-201ENST00000384277 107 ntBASIC3.04□□□□□ -1.92
CHFRQ96EP1 Y_RNA.563-201ENST00000384707 108 ntBASIC3.04□□□□□ -1.92
CHFRQ96EP1 RNU6-381P-201ENST00000391259 108 ntBASIC3.04□□□□□ -1.92
CHFRQ96EP1 AC010095.1-201ENST00000443543 144 ntBASIC3.04□□□□□ -1.92
CHFRQ96EP1 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC3.04□□□□□ -1.92
CHFRQ96EP1 RNU7-197P-201ENST00000458836 62 ntBASIC3.04□□□□□ -1.92
CHFRQ96EP1 AC083906.5-201ENST00000503722 328 ntBASIC3.04□□□□□ -1.92
CHFRQ96EP1 SEM1P1-201ENST00000506694 209 ntBASIC3.04□□□□□ -1.92
CHFRQ96EP1 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC3.04□□□□□ -1.92
CHFRQ96EP1 RNA5SP217-201ENST00000515959 91 ntBASIC3.04□□□□□ -1.92
CHFRQ96EP1 AC100767.1-201ENST00000528178 123 ntBASIC3.04□□□□□ -1.92
CHFRQ96EP1 AC022616.8-201ENST00000533569 253 ntBASIC3.04□□□□□ -1.92
CHFRQ96EP1 MIR4431-201ENST00000579990 94 ntBASIC3.04□□□□□ -1.92
CHFRQ96EP1 DEFB117-201ENST00000602356 141 ntBASIC3.04□□□□□ -1.92
CHFRQ96EP1 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.04□□□□□ -1.92
CHFRQ96EP1 ANKRD30BP1-201ENST00000451052 2186 ntBASIC3.04□□□□□ -1.92
CHFRQ96EP1 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC3.03□□□□□ -1.92
CHFRQ96EP1 SNORD32A-201ENST00000364805 84 ntBASIC3.03□□□□□ -1.92
CHFRQ96EP1 RNU6-1056P-201ENST00000383996 107 ntBASIC3.03□□□□□ -1.92
CHFRQ96EP1 RN7SKP123-201ENST00000410732 291 ntBASIC3.03□□□□□ -1.92
CHFRQ96EP1 RPL32P35-201ENST00000415214 394 ntBASIC3.03□□□□□ -1.92
CHFRQ96EP1 AC138623.1-201ENST00000418060 216 ntBASIC3.03□□□□□ -1.92
CHFRQ96EP1 EIF1AXP1-201ENST00000419267 435 ntBASIC3.03□□□□□ -1.92
CHFRQ96EP1 AL109933.2-201ENST00000452651 260 ntBASIC3.03□□□□□ -1.92
CHFRQ96EP1 Y_RNA.797-201ENST00000515977 94 ntBASIC3.03□□□□□ -1.92
CHFRQ96EP1 SNORA43.2-201ENST00000516652 128 ntBASIC3.03□□□□□ -1.92
CHFRQ96EP1 RNA5SP290-201ENST00000517133 127 ntBASIC3.03□□□□□ -1.92
CHFRQ96EP1 RNA5SP291-201ENST00000517222 105 ntBASIC3.03□□□□□ -1.92
CHFRQ96EP1 CYCSP26-201ENST00000534107 320 ntBASIC3.03□□□□□ -1.92
CHFRQ96EP1 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC3.03□□□□□ -1.92
CHFRQ96EP1 MIR3613-201ENST00000579844 87 ntBASIC3.03□□□□□ -1.92
CHFRQ96EP1 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC3.03□□□□□ -1.92
CHFRQ96EP1 AL670379.2-201ENST00000604983 252 ntBASIC3.03□□□□□ -1.92
CHFRQ96EP1 AC005520.5-201ENST00000613926 164 ntBASIC3.03□□□□□ -1.92
CHFRQ96EP1 Y_RNA.802-201ENST00000614892 130 ntBASIC3.03□□□□□ -1.92
CHFRQ96EP1 UCA1.1-201ENST00000620952 75 ntBASIC3.03□□□□□ -1.92
CHFRQ96EP1 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC3.02□□□□□ -1.93
CHFRQ96EP1 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
CHFRQ96EP1 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
CHFRQ96EP1 RNU6-137P-201ENST00000363680 108 ntBASIC3.02□□□□□ -1.93
CHFRQ96EP1 Y_RNA.172-201ENST00000363765 102 ntBASIC3.02□□□□□ -1.93
CHFRQ96EP1 RNU6-898P-201ENST00000365627 104 ntBASIC3.02□□□□□ -1.93
CHFRQ96EP1 Y_RNA.525-201ENST00000384570 113 ntBASIC3.02□□□□□ -1.93
CHFRQ96EP1 MIR627-201ENST00000384979 97 ntBASIC3.02□□□□□ -1.93
CHFRQ96EP1 MIR888-201ENST00000401186 77 ntBASIC3.02□□□□□ -1.93
CHFRQ96EP1 MIR513C-201ENST00000401352 84 ntBASIC3.02□□□□□ -1.93
CHFRQ96EP1 RNA5SP492-201ENST00000411330 114 ntBASIC3.02□□□□□ -1.93
CHFRQ96EP1 AL139281.1-201ENST00000422120 335 ntBASIC3.02□□□□□ -1.93
CHFRQ96EP1 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC3.02□□□□□ -1.93
CHFRQ96EP1 U8.19-201ENST00000459095 133 ntBASIC3.02□□□□□ -1.93
CHFRQ96EP1 RNU6-1256P-201ENST00000516539 103 ntBASIC3.02□□□□□ -1.93
CHFRQ96EP1 RNU6-928P-201ENST00000516876 104 ntBASIC3.02□□□□□ -1.93
CHFRQ96EP1 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC3.02□□□□□ -1.93
CHFRQ96EP1 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
CHFRQ96EP1 AC127455.1-201ENST00000565496 145 ntBASIC3.02□□□□□ -1.93
CHFRQ96EP1 AC103810.1-201ENST00000579873 453 ntBASIC3.02□□□□□ -1.93
CHFRQ96EP1 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC3.02□□□□□ -1.93
CHFRQ96EP1 DNAJC19P2-201ENST00000593340 302 ntBASIC3.02□□□□□ -1.93
CHFRQ96EP1 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
CHFRQ96EP1 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
CHFRQ96EP1 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.01□□□□□ -1.93
CHFRQ96EP1 RNU6-527P-201ENST00000363425 104 ntBASIC3.01□□□□□ -1.93
CHFRQ96EP1 SNORD115-8-201ENST00000363856 82 ntBASIC3.01□□□□□ -1.93
CHFRQ96EP1 snoU2_19.4-201ENST00000364329 80 ntBASIC3.01□□□□□ -1.93
CHFRQ96EP1 SNORD115-38-201ENST00000365037 82 ntBASIC3.01□□□□□ -1.93
CHFRQ96EP1 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC3.01□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms