Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 MIR493-201ENST00000385254 89 ntBASIC4.54□□□□□ -1.68
NKX2-3Q8TAU0 MIR199A2-201ENST00000385289 110 ntBASIC4.54□□□□□ -1.68
NKX2-3Q8TAU0 RNA5SP104-201ENST00000410989 118 ntBASIC4.54□□□□□ -1.68
NKX2-3Q8TAU0 AC008134.1-201ENST00000420943 193 ntBASIC4.54□□□□□ -1.68
NKX2-3Q8TAU0 snoU13.14-201ENST00000459372 104 ntBASIC4.54□□□□□ -1.68
NKX2-3Q8TAU0 POC1B-211ENST00000549504 581 ntTSL 5 BASIC4.54□□□□□ -1.68
NKX2-3Q8TAU0 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC4.54□□□□□ -1.68
NKX2-3Q8TAU0 RPL17P51-201ENST00000605218 238 ntBASIC4.54□□□□□ -1.68
NKX2-3Q8TAU0 RNU1-30P-201ENST00000606575 163 ntBASIC4.54□□□□□ -1.68
NKX2-3Q8TAU0 IGLL4P-201ENST00000614590 133 ntBASIC4.54□□□□□ -1.68
NKX2-3Q8TAU0 Pinc.1-201ENST00000616452 154 ntBASIC4.54□□□□□ -1.68
NKX2-3Q8TAU0 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
NKX2-3Q8TAU0 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
NKX2-3Q8TAU0 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
NKX2-3Q8TAU0 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
NKX2-3Q8TAU0 UBE3AP2-201ENST00000429033 2259 ntBASIC4.53□□□□□ -1.68
NKX2-3Q8TAU0 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
NKX2-3Q8TAU0 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
NKX2-3Q8TAU0 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC4.53□□□□□ -1.68
NKX2-3Q8TAU0 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC4.53□□□□□ -1.68
NKX2-3Q8TAU0 Y_RNA.213-201ENST00000364178 111 ntBASIC4.53□□□□□ -1.68
NKX2-3Q8TAU0 AL035423.1-201ENST00000420331 213 ntBASIC4.53□□□□□ -1.68
NKX2-3Q8TAU0 HMGN2P20-201ENST00000437531 273 ntBASIC4.53□□□□□ -1.68
NKX2-3Q8TAU0 SNORD11-201ENST00000459124 84 ntBASIC4.53□□□□□ -1.68
NKX2-3Q8TAU0 AC019288.1-201ENST00000557918 224 ntBASIC4.53□□□□□ -1.68
NKX2-3Q8TAU0 AC002064.3-201ENST00000623448 346 ntBASIC4.53□□□□□ -1.68
NKX2-3Q8TAU0 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC4.53□□□□□ -1.68
NKX2-3Q8TAU0 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.53□□□□□ -1.68
NKX2-3Q8TAU0 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
NKX2-3Q8TAU0 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
NKX2-3Q8TAU0 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC4.53□□□□□ -1.68
NKX2-3Q8TAU0 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC4.53□□□□□ -1.69
NKX2-3Q8TAU0 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
NKX2-3Q8TAU0 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
NKX2-3Q8TAU0 AC018634.1-201ENST00000437554 401 ntBASIC4.52□□□□□ -1.69
NKX2-3Q8TAU0 RPL27AP5-201ENST00000469428 449 ntBASIC4.52□□□□□ -1.69
NKX2-3Q8TAU0 RN7SL271P-201ENST00000487601 295 ntBASIC4.52□□□□□ -1.69
NKX2-3Q8TAU0 AC010598.1-201ENST00000510378 103 ntBASIC4.52□□□□□ -1.69
NKX2-3Q8TAU0 RPL23AP91-201ENST00000569211 455 ntBASIC4.52□□□□□ -1.69
NKX2-3Q8TAU0 MIR3124-201ENST00000582636 67 ntBASIC4.52□□□□□ -1.69
NKX2-3Q8TAU0 SNORA62.6-201ENST00000606322 83 ntBASIC4.52□□□□□ -1.69
NKX2-3Q8TAU0 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC4.52□□□□□ -1.69
NKX2-3Q8TAU0 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
NKX2-3Q8TAU0 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
NKX2-3Q8TAU0 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC4.52□□□□□ -1.69
NKX2-3Q8TAU0 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
NKX2-3Q8TAU0 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC4.51□□□□□ -1.69
NKX2-3Q8TAU0 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC4.51□□□□□ -1.69
NKX2-3Q8TAU0 AC103988.1-201ENST00000566382 2177 ntBASIC4.51□□□□□ -1.69
NKX2-3Q8TAU0 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
NKX2-3Q8TAU0 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
NKX2-3Q8TAU0 AL356292.1-201ENST00000283110 373 ntBASIC4.51□□□□□ -1.69
NKX2-3Q8TAU0 RNU6-1305P-201ENST00000364353 104 ntBASIC4.51□□□□□ -1.69
NKX2-3Q8TAU0 RNU6-787P-201ENST00000384032 107 ntBASIC4.51□□□□□ -1.69
NKX2-3Q8TAU0 MIR562-201ENST00000384894 95 ntBASIC4.51□□□□□ -1.69
NKX2-3Q8TAU0 MIR759-201ENST00000390224 91 ntBASIC4.51□□□□□ -1.69
NKX2-3Q8TAU0 MIR1251-201ENST00000408552 70 ntBASIC4.51□□□□□ -1.69
NKX2-3Q8TAU0 RNA5SP129-201ENST00000410276 118 ntBASIC4.51□□□□□ -1.69
NKX2-3Q8TAU0 RPS26P15-201ENST00000488067 348 ntBASIC4.51□□□□□ -1.69
NKX2-3Q8TAU0 OR9P1P-201ENST00000496431 281 ntBASIC4.51□□□□□ -1.69
NKX2-3Q8TAU0 AC093663.1-201ENST00000497190 394 ntBASIC4.51□□□□□ -1.69
NKX2-3Q8TAU0 AC011406.1-201ENST00000512440 370 ntBASIC4.51□□□□□ -1.69
NKX2-3Q8TAU0 RN7SKP18-201ENST00000516005 275 ntBASIC4.51□□□□□ -1.69
NKX2-3Q8TAU0 RNU6-504P-201ENST00000516568 104 ntBASIC4.51□□□□□ -1.69
NKX2-3Q8TAU0 MIR3651-201ENST00000630427 90 ntBASIC4.51□□□□□ -1.69
NKX2-3Q8TAU0 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.51□□□□□ -1.69
NKX2-3Q8TAU0 FAM35BP-202ENST00000497389 3337 ntBASIC4.51□□□□□ -1.69
NKX2-3Q8TAU0 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC4.51□□□□□ -1.69
NKX2-3Q8TAU0 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
NKX2-3Q8TAU0 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
NKX2-3Q8TAU0 Y_RNA.203-201ENST00000364106 102 ntBASIC4.5□□□□□ -1.69
NKX2-3Q8TAU0 Y_RNA.486-201ENST00000384398 107 ntBASIC4.5□□□□□ -1.69
NKX2-3Q8TAU0 AL117342.1-201ENST00000404861 406 ntBASIC4.5□□□□□ -1.69
NKX2-3Q8TAU0 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC4.5□□□□□ -1.69
NKX2-3Q8TAU0 AC104619.4-201ENST00000510773 249 ntBASIC4.5□□□□□ -1.69
NKX2-3Q8TAU0 AC091826.1-201ENST00000514065 313 ntBASIC4.5□□□□□ -1.69
NKX2-3Q8TAU0 RNU7-149P-201ENST00000516739 59 ntBASIC4.5□□□□□ -1.69
NKX2-3Q8TAU0 MIR3129-201ENST00000581095 76 ntBASIC4.5□□□□□ -1.69
NKX2-3Q8TAU0 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC4.5□□□□□ -1.69
NKX2-3Q8TAU0 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC4.5□□□□□ -1.69
NKX2-3Q8TAU0 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
NKX2-3Q8TAU0 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC4.5□□□□□ -1.69
NKX2-3Q8TAU0 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
NKX2-3Q8TAU0 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
NKX2-3Q8TAU0 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
NKX2-3Q8TAU0 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
NKX2-3Q8TAU0 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.5□□□□□ -1.69
NKX2-3Q8TAU0 AC007656.2-201ENST00000624902 4547 ntBASIC4.5□□□□□ -1.69
NKX2-3Q8TAU0 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.5□□□□□ -1.69
NKX2-3Q8TAU0 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
NKX2-3Q8TAU0 ANKRD20A9P-201ENST00000457997 2978 ntBASIC4.5□□□□□ -1.69
NKX2-3Q8TAU0 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC4.49□□□□□ -1.69
NKX2-3Q8TAU0 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.49□□□□□ -1.69
NKX2-3Q8TAU0 AL672296.1-201ENST00000427780 2158 ntBASIC4.49□□□□□ -1.69
NKX2-3Q8TAU0 RNU6-414P-201ENST00000363705 104 ntBASIC4.49□□□□□ -1.69
NKX2-3Q8TAU0 SNORA63D-201ENST00000364359 132 ntBASIC4.49□□□□□ -1.69
NKX2-3Q8TAU0 Y_RNA.500-201ENST00000384466 111 ntBASIC4.49□□□□□ -1.69
NKX2-3Q8TAU0 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
NKX2-3Q8TAU0 AC063976.3-201ENST00000426849 329 ntBASIC4.49□□□□□ -1.69
NKX2-3Q8TAU0 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC4.49□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 116 ms