Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 MIR3199-1-201ENST00000582434 88 ntBASIC3.47□□□□□ -1.85
LIG3P49916 RNU2-4P-201ENST00000606190 192 ntBASIC3.47□□□□□ -1.85
LIG3P49916 U2.15-201ENST00000611544 191 ntBASIC3.47□□□□□ -1.85
LIG3P49916 U2.16-201ENST00000613119 191 ntBASIC3.47□□□□□ -1.85
LIG3P49916 U2.12-201ENST00000613778 191 ntBASIC3.47□□□□□ -1.85
LIG3P49916 U2.9-201ENST00000615427 191 ntBASIC3.47□□□□□ -1.85
LIG3P49916 U2.11-201ENST00000616345 191 ntBASIC3.47□□□□□ -1.85
LIG3P49916 U2.2-201ENST00000616535 191 ntBASIC3.47□□□□□ -1.85
LIG3P49916 U2.3-201ENST00000617785 191 ntBASIC3.47□□□□□ -1.85
LIG3P49916 U2.19-201ENST00000618602 191 ntBASIC3.47□□□□□ -1.85
LIG3P49916 RNU2-1-201ENST00000618664 191 ntBASIC3.47□□□□□ -1.85
LIG3P49916 U2.6-201ENST00000619225 191 ntBASIC3.47□□□□□ -1.85
LIG3P49916 U2.5-201ENST00000619465 191 ntBASIC3.47□□□□□ -1.85
LIG3P49916 U2.10-201ENST00000620268 191 ntBASIC3.47□□□□□ -1.85
LIG3P49916 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
LIG3P49916 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.85
LIG3P49916 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC3.46□□□□□ -1.85
LIG3P49916 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.46□□□□□ -1.85
LIG3P49916 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.46□□□□□ -1.86
LIG3P49916 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC3.46□□□□□ -1.86
LIG3P49916 AL157777.2-201ENST00000258070 137 ntBASIC3.46□□□□□ -1.86
LIG3P49916 SNORD114-7-201ENST00000362520 77 ntBASIC3.46□□□□□ -1.86
LIG3P49916 RNU1-35P-201ENST00000362782 153 ntBASIC3.46□□□□□ -1.86
LIG3P49916 RNU6-899P-201ENST00000363947 107 ntBASIC3.46□□□□□ -1.86
LIG3P49916 RNU6-804P-201ENST00000384286 107 ntBASIC3.46□□□□□ -1.86
LIG3P49916 MIR218-1-201ENST00000384999 110 ntBASIC3.46□□□□□ -1.86
LIG3P49916 MTCO2P33-201ENST00000402100 465 ntBASIC3.46□□□□□ -1.86
LIG3P49916 RN7SKP123-201ENST00000410732 291 ntBASIC3.46□□□□□ -1.86
LIG3P49916 RNU6-394P-201ENST00000410735 107 ntBASIC3.46□□□□□ -1.86
LIG3P49916 AL451074.5-201ENST00000415894 435 ntBASIC3.46□□□□□ -1.86
LIG3P49916 snoU13.22-201ENST00000459428 104 ntBASIC3.46□□□□□ -1.86
LIG3P49916 RPL21P10-201ENST00000463521 490 ntBASIC3.46□□□□□ -1.86
LIG3P49916 AC008155.2-201ENST00000464337 397 ntBASIC3.46□□□□□ -1.86
LIG3P49916 SCARNA20.6-201ENST00000517251 106 ntBASIC3.46□□□□□ -1.86
LIG3P49916 AC107934.2-201ENST00000518653 310 ntBASIC3.46□□□□□ -1.86
LIG3P49916 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.46□□□□□ -1.86
LIG3P49916 AC023043.3-201ENST00000593113 385 ntBASIC3.46□□□□□ -1.86
LIG3P49916 AC025754.2-201ENST00000606491 432 ntBASIC3.46□□□□□ -1.86
LIG3P49916 AC108706.1-201ENST00000611053 297 ntBASIC3.46□□□□□ -1.86
LIG3P49916 snoZ196.1-201ENST00000625269 89 ntBASIC3.46□□□□□ -1.86
LIG3P49916 MFSD8-233ENST00000641482 4860 ntBASIC3.46□□□□□ -1.86
LIG3P49916 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
LIG3P49916 AC093908.1-201ENST00000623125 8092 ntBASIC3.45□□□□□ -1.86
LIG3P49916 Y_RNA.8-201ENST00000362353 102 ntBASIC3.45□□□□□ -1.86
LIG3P49916 RNU1-33P-201ENST00000364249 162 ntBASIC3.45□□□□□ -1.86
LIG3P49916 Y_RNA.293-201ENST00000364908 93 ntBASIC3.45□□□□□ -1.86
LIG3P49916 Y_RNA.310-201ENST00000365063 113 ntBASIC3.45□□□□□ -1.86
LIG3P49916 SNORA70.4-201ENST00000365509 134 ntBASIC3.45□□□□□ -1.86
LIG3P49916 Y_RNA.441-201ENST00000384123 112 ntBASIC3.45□□□□□ -1.86
LIG3P49916 SNORA19-201ENST00000384737 128 ntBASIC3.45□□□□□ -1.86
LIG3P49916 RNVU1-14-201ENST00000384770 164 ntBASIC3.45□□□□□ -1.86
LIG3P49916 SNORA48.8-201ENST00000391324 134 ntBASIC3.45□□□□□ -1.86
LIG3P49916 RNU6-1328P-201ENST00000410938 106 ntBASIC3.45□□□□□ -1.86
LIG3P49916 RNU7-200P-201ENST00000516105 62 ntBASIC3.45□□□□□ -1.86
LIG3P49916 RNU4ATAC17P-201ENST00000517272 120 ntBASIC3.45□□□□□ -1.86
LIG3P49916 IGKV2-26-201ENST00000518305 343 ntBASIC3.45□□□□□ -1.86
LIG3P49916 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC3.45□□□□□ -1.86
LIG3P49916 AC134026.1-201ENST00000623249 2239 ntBASIC3.45□□□□□ -1.86
LIG3P49916 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
LIG3P49916 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC3.45□□□□□ -1.86
LIG3P49916 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.45□□□□□ -1.86
LIG3P49916 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.45□□□□□ -1.86
LIG3P49916 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
LIG3P49916 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.44□□□□□ -1.86
LIG3P49916 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.44□□□□□ -1.86
LIG3P49916 RNU6-1048P-201ENST00000364054 107 ntBASIC3.44□□□□□ -1.86
LIG3P49916 SNORD31B-201ENST00000364977 69 ntBASIC3.44□□□□□ -1.86
LIG3P49916 RNU6-975P-201ENST00000384296 105 ntBASIC3.44□□□□□ -1.86
LIG3P49916 MIR873-201ENST00000401120 77 ntBASIC3.44□□□□□ -1.86
LIG3P49916 AL355497.1-201ENST00000406262 551 ntBASIC3.44□□□□□ -1.86
LIG3P49916 RNU6-1135P-201ENST00000411083 103 ntBASIC3.44□□□□□ -1.86
LIG3P49916 TRIAP1P1-201ENST00000427062 225 ntBASIC3.44□□□□□ -1.86
LIG3P49916 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC3.44□□□□□ -1.86
LIG3P49916 RPS29P12-201ENST00000460178 152 ntBASIC3.44□□□□□ -1.86
LIG3P49916 SRI-210ENST00000490437 570 ntTSL 2 BASIC3.44□□□□□ -1.86
LIG3P49916 ATP5EP1-201ENST00000510257 156 ntBASIC3.44□□□□□ -1.86
LIG3P49916 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.44□□□□□ -1.86
LIG3P49916 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC3.44□□□□□ -1.86
LIG3P49916 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC3.44□□□□□ -1.86
LIG3P49916 AC069294.1-201ENST00000608397 350 ntBASIC3.44□□□□□ -1.86
LIG3P49916 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC3.44□□□□□ -1.86
LIG3P49916 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.44□□□□□ -1.86
LIG3P49916 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.44□□□□□ -1.86
LIG3P49916 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
LIG3P49916 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC3.43□□□□□ -1.86
LIG3P49916 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC3.43□□□□□ -1.86
LIG3P49916 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
LIG3P49916 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
LIG3P49916 Y_RNA.75-201ENST00000362927 97 ntBASIC3.43□□□□□ -1.86
LIG3P49916 Y_RNA.182-201ENST00000363880 111 ntBASIC3.43□□□□□ -1.86
LIG3P49916 RNU6-312P-201ENST00000364629 107 ntBASIC3.43□□□□□ -1.86
LIG3P49916 SNORA8.3-201ENST00000384679 139 ntBASIC3.43□□□□□ -1.86
LIG3P49916 SNORA48.5-201ENST00000391143 135 ntBASIC3.43□□□□□ -1.86
LIG3P49916 RNU6-381P-201ENST00000391259 108 ntBASIC3.43□□□□□ -1.86
LIG3P49916 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC3.43□□□□□ -1.86
LIG3P49916 RPS27AP9-201ENST00000477681 438 ntBASIC3.43□□□□□ -1.86
LIG3P49916 RN7SKP164-201ENST00000516138 266 ntBASIC3.43□□□□□ -1.86
LIG3P49916 AC007179.3-201ENST00000604976 235 ntBASIC3.43□□□□□ -1.86
LIG3P49916 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC3.43□□□□□ -1.86
LIG3P49916 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.43□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms