Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC1.88□□□□□ -2.11
LHX1P48742 RNU6-250P-201ENST00000516958 103 ntBASIC1.88□□□□□ -2.11
LHX1P48742 RNU1-117P-201ENST00000517041 158 ntBASIC1.88□□□□□ -2.11
LHX1P48742 RNU6-1213P-201ENST00000517075 94 ntBASIC1.88□□□□□ -2.11
LHX1P48742 MIR5701-3-201ENST00000578890 82 ntBASIC1.88□□□□□ -2.11
LHX1P48742 MIR5701-1-201ENST00000585138 82 ntBASIC1.88□□□□□ -2.11
LHX1P48742 SNORD11B-201ENST00000607707 90 ntBASIC1.88□□□□□ -2.11
LHX1P48742 RNU6ATAC35P-201ENST00000609276 444 ntBASIC1.88□□□□□ -2.11
LHX1P48742 MIR5701-2-201ENST00000615634 82 ntBASIC1.88□□□□□ -2.11
LHX1P48742 U1.36-201ENST00000620684 176 ntBASIC1.88□□□□□ -2.11
LHX1P48742 AC092794.2-201ENST00000620933 563 ntBASIC1.88□□□□□ -2.11
LHX1P48742 MIR586-201ENST00000385035 97 ntBASIC1.87□□□□□ -2.11
LHX1P48742 AL356379.1-201ENST00000414105 126 ntBASIC1.87□□□□□ -2.11
LHX1P48742 USP9YP16-201ENST00000430287 407 ntBASIC1.87□□□□□ -2.11
LHX1P48742 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC1.87□□□□□ -2.11
LHX1P48742 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC1.87□□□□□ -2.11
LHX1P48742 AC074290.1-201ENST00000448883 135 ntBASIC1.87□□□□□ -2.11
LHX1P48742 USP9YP23-201ENST00000455085 407 ntBASIC1.87□□□□□ -2.11
LHX1P48742 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC1.87□□□□□ -2.11
LHX1P48742 HMGN2P9-201ENST00000476875 229 ntBASIC1.87□□□□□ -2.11
LHX1P48742 AC091951.2-201ENST00000500762 203 ntBASIC1.87□□□□□ -2.11
LHX1P48742 RNU6-559P-201ENST00000516151 98 ntBASIC1.87□□□□□ -2.11
LHX1P48742 RNU2-34P-201ENST00000516534 121 ntBASIC1.87□□□□□ -2.11
LHX1P48742 MIR4419B-201ENST00000577260 68 ntBASIC1.87□□□□□ -2.11
LHX1P48742 MIR4255-201ENST00000579351 72 ntBASIC1.87□□□□□ -2.11
LHX1P48742 MIR3683-201ENST00000580847 82 ntBASIC1.87□□□□□ -2.11
LHX1P48742 MIR5690-201ENST00000583739 73 ntBASIC1.87□□□□□ -2.11
LHX1P48742 AL162373.1-201ENST00000620433 407 ntBASIC1.87□□□□□ -2.11
LHX1P48742 AL078596.1-201ENST00000624856 447 ntBASIC1.87□□□□□ -2.11
LHX1P48742 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.86□□□□□ -2.11
LHX1P48742 AL159152.1-201ENST00000635019 2587 ntBASIC1.86□□□□□ -2.11
LHX1P48742 RNU1-62P-201ENST00000362599 164 ntBASIC1.86□□□□□ -2.11
LHX1P48742 Y_RNA.106-201ENST00000363189 100 ntBASIC1.86□□□□□ -2.11
LHX1P48742 RNU6-1188P-201ENST00000363795 107 ntBASIC1.86□□□□□ -2.11
LHX1P48742 MIR190B-201ENST00000401119 79 ntBASIC1.86□□□□□ -2.11
LHX1P48742 AL033519.2-201ENST00000403958 392 ntBASIC1.86□□□□□ -2.11
LHX1P48742 RNA5SP501-201ENST00000410990 112 ntBASIC1.86□□□□□ -2.11
LHX1P48742 AL158823.1-201ENST00000418441 478 ntBASIC1.86□□□□□ -2.11
LHX1P48742 AL353689.1-201ENST00000438895 199 ntBASIC1.86□□□□□ -2.11
LHX1P48742 MTND5P20-201ENST00000448677 143 ntBASIC1.86□□□□□ -2.11
LHX1P48742 RPL23AP3-201ENST00000453844 468 ntBASIC1.86□□□□□ -2.11
LHX1P48742 AC067942.3-201ENST00000512025 362 ntBASIC1.86□□□□□ -2.11
LHX1P48742 RNU6-1114P-201ENST00000516022 107 ntBASIC1.86□□□□□ -2.11
LHX1P48742 RNU6-948P-201ENST00000516374 107 ntBASIC1.86□□□□□ -2.11
LHX1P48742 SNORA25.15-201ENST00000516487 89 ntBASIC1.86□□□□□ -2.11
LHX1P48742 SUMO2P18-201ENST00000518873 252 ntBASIC1.86□□□□□ -2.11
LHX1P48742 MIR5695-201ENST00000579717 85 ntBASIC1.86□□□□□ -2.11
LHX1P48742 AC005786.1-201ENST00000588553 154 ntBASIC1.86□□□□□ -2.11
LHX1P48742 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.86□□□□□ -2.11
LHX1P48742 AC083806.3-201ENST00000614016 455 ntBASIC1.86□□□□□ -2.11
LHX1P48742 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.86□□□□□ -2.11
LHX1P48742 SDR42E1P4-201ENST00000620894 481 ntBASIC1.86□□□□□ -2.11
LHX1P48742 AC008873.1-201ENST00000625051 138 ntBASIC1.86□□□□□ -2.11
LHX1P48742 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.86□□□□□ -2.11
LHX1P48742 RNU6-222P-201ENST00000362438 107 ntBASIC1.85□□□□□ -2.11
LHX1P48742 RNU6-975P-201ENST00000384296 105 ntBASIC1.85□□□□□ -2.11
LHX1P48742 MIR10B-201ENST00000385011 110 ntBASIC1.85□□□□□ -2.11
LHX1P48742 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.85□□□□□ -2.11
LHX1P48742 RNU1-139P-201ENST00000391307 165 ntBASIC1.85□□□□□ -2.11
LHX1P48742 AL627390.1-201ENST00000396055 340 ntBASIC1.85□□□□□ -2.11
LHX1P48742 Y_RNA.646-201ENST00000410980 101 ntBASIC1.85□□□□□ -2.11
LHX1P48742 RNU6-1304P-201ENST00000411374 106 ntBASIC1.85□□□□□ -2.11
LHX1P48742 AC007098.1-201ENST00000420122 367 ntBASIC1.85□□□□□ -2.11
LHX1P48742 AC093019.1-201ENST00000443135 252 ntBASIC1.85□□□□□ -2.11
LHX1P48742 AC016717.1-201ENST00000448918 286 ntBASIC1.85□□□□□ -2.11
LHX1P48742 RNU7-87P-201ENST00000459343 62 ntBASIC1.85□□□□□ -2.11
LHX1P48742 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC1.85□□□□□ -2.11
LHX1P48742 AC093303.1-201ENST00000514549 295 ntBASIC1.85□□□□□ -2.11
LHX1P48742 RNU6-875P-201ENST00000516488 106 ntBASIC1.85□□□□□ -2.11
LHX1P48742 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.85□□□□□ -2.11
LHX1P48742 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC1.85□□□□□ -2.11
LHX1P48742 APOOP3-201ENST00000536787 586 ntBASIC1.85□□□□□ -2.11
LHX1P48742 AC004584.2-201ENST00000570407 410 ntBASIC1.85□□□□□ -2.11
LHX1P48742 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.85□□□□□ -2.11
LHX1P48742 MIR3618-201ENST00000580330 88 ntBASIC1.85□□□□□ -2.11
LHX1P48742 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC1.85□□□□□ -2.11
LHX1P48742 AC025253.1-201ENST00000613623 543 ntBASIC1.85□□□□□ -2.11
LHX1P48742 MIR1302-1-201ENST00000637932 143 ntBASIC1.85□□□□□ -2.11
LHX1P48742 MTND5P16-201ENST00000460269 1703 ntBASIC1.85□□□□□ -2.11
LHX1P48742 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
LHX1P48742 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
LHX1P48742 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
LHX1P48742 RNU6-727P-201ENST00000363592 107 ntBASIC1.84□□□□□ -2.11
LHX1P48742 Y_RNA.384-201ENST00000383909 102 ntBASIC1.84□□□□□ -2.11
LHX1P48742 Y_RNA.387-201ENST00000383918 102 ntBASIC1.84□□□□□ -2.11
LHX1P48742 RNU6-793P-201ENST00000384233 104 ntBASIC1.84□□□□□ -2.11
LHX1P48742 SNORA67.2-201ENST00000384300 149 ntBASIC1.84□□□□□ -2.11
LHX1P48742 RNY3P14-201ENST00000384309 102 ntBASIC1.84□□□□□ -2.11
LHX1P48742 RNU6-1297P-201ENST00000384415 104 ntBASIC1.84□□□□□ -2.11
LHX1P48742 RNU6-1235P-201ENST00000384559 107 ntBASIC1.84□□□□□ -2.11
LHX1P48742 RNU6-310P-201ENST00000384655 107 ntBASIC1.84□□□□□ -2.11
LHX1P48742 SNORA48.1-201ENST00000390879 135 ntBASIC1.84□□□□□ -2.11
LHX1P48742 RNU6-1009P-201ENST00000390996 107 ntBASIC1.84□□□□□ -2.11
LHX1P48742 RNU6-482P-201ENST00000391068 107 ntBASIC1.84□□□□□ -2.11
LHX1P48742 AC092423.1-201ENST00000430165 186 ntBASIC1.84□□□□□ -2.11
LHX1P48742 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.84□□□□□ -2.11
LHX1P48742 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.84□□□□□ -2.11
LHX1P48742 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.84□□□□□ -2.11
LHX1P48742 RNU6-498P-201ENST00000459468 107 ntBASIC1.84□□□□□ -2.11
LHX1P48742 RPL17P19-201ENST00000489069 552 ntBASIC1.84□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 182 ms