Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 SNORA48.11-201ENST00000517015 89 ntBASIC3.97□□□□□ -1.77
RFX1P22670 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.97□□□□□ -1.77
RFX1P22670 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC3.97□□□□□ -1.77
RFX1P22670 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.96□□□□□ -1.77
RFX1P22670 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
RFX1P22670 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
RFX1P22670 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.96□□□□□ -1.78
RFX1P22670 SNORA27.1-201ENST00000362604 124 ntBASIC3.96□□□□□ -1.78
RFX1P22670 RNU4-10P-201ENST00000364383 140 ntBASIC3.96□□□□□ -1.78
RFX1P22670 SNORD50.2-201ENST00000365465 70 ntBASIC3.96□□□□□ -1.78
RFX1P22670 RNU6-144P-201ENST00000383951 107 ntBASIC3.96□□□□□ -1.78
RFX1P22670 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
RFX1P22670 MIR1289-1-201ENST00000408836 144 ntBASIC3.96□□□□□ -1.78
RFX1P22670 AL121890.1-201ENST00000435457 205 ntBASIC3.96□□□□□ -1.78
RFX1P22670 SNORD65B-201ENST00000459126 73 ntBASIC3.96□□□□□ -1.78
RFX1P22670 RPL21P10-201ENST00000463521 490 ntBASIC3.96□□□□□ -1.78
RFX1P22670 SRI-210ENST00000490437 570 ntTSL 2 BASIC3.96□□□□□ -1.78
RFX1P22670 AC005840.1-201ENST00000498412 377 ntBASIC3.96□□□□□ -1.78
RFX1P22670 RN7SKP164-201ENST00000516138 266 ntBASIC3.96□□□□□ -1.78
RFX1P22670 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC3.96□□□□□ -1.78
RFX1P22670 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.96□□□□□ -1.78
RFX1P22670 MIR4644-201ENST00000579929 84 ntBASIC3.96□□□□□ -1.78
RFX1P22670 MIR3922-201ENST00000585192 84 ntBASIC3.96□□□□□ -1.78
RFX1P22670 MIR1248-201ENST00000629190 106 ntBASIC3.96□□□□□ -1.78
RFX1P22670 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
RFX1P22670 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC3.96□□□□□ -1.78
RFX1P22670 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
RFX1P22670 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
RFX1P22670 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.95□□□□□ -1.78
RFX1P22670 AC092435.3-201ENST00000565538 3654 ntBASIC3.95□□□□□ -1.78
RFX1P22670 Y_RNA.124-201ENST00000363339 93 ntBASIC3.95□□□□□ -1.78
RFX1P22670 snoU2_19.4-201ENST00000364329 80 ntBASIC3.95□□□□□ -1.78
RFX1P22670 RNU6-438P-201ENST00000365561 103 ntBASIC3.95□□□□□ -1.78
RFX1P22670 MIR526A2-201ENST00000390198 65 ntBASIC3.95□□□□□ -1.78
RFX1P22670 AC002075.2-201ENST00000425207 252 ntBASIC3.95□□□□□ -1.78
RFX1P22670 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC3.95□□□□□ -1.78
RFX1P22670 HMGN2P18-201ENST00000450680 270 ntBASIC3.95□□□□□ -1.78
RFX1P22670 MIR3616-201ENST00000584070 92 ntBASIC3.95□□□□□ -1.78
RFX1P22670 AC004832.4-201ENST00000608952 331 ntBASIC3.95□□□□□ -1.78
RFX1P22670 Y_RNA.802-201ENST00000614892 130 ntBASIC3.95□□□□□ -1.78
RFX1P22670 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.95□□□□□ -1.78
RFX1P22670 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
RFX1P22670 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
RFX1P22670 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
RFX1P22670 RNU6-103P-201ENST00000363686 107 ntBASIC3.94□□□□□ -1.78
RFX1P22670 Y_RNA.172-201ENST00000363765 102 ntBASIC3.94□□□□□ -1.78
RFX1P22670 RNU6-704P-201ENST00000364162 103 ntBASIC3.94□□□□□ -1.78
RFX1P22670 RNU2-32P-201ENST00000411193 191 ntBASIC3.94□□□□□ -1.78
RFX1P22670 RHEBP3-201ENST00000411920 351 ntBASIC3.94□□□□□ -1.78
RFX1P22670 AC008134.1-201ENST00000420943 193 ntBASIC3.94□□□□□ -1.78
RFX1P22670 RPS29P31-201ENST00000446147 164 ntBASIC3.94□□□□□ -1.78
RFX1P22670 AC016717.1-201ENST00000448918 286 ntBASIC3.94□□□□□ -1.78
RFX1P22670 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC3.94□□□□□ -1.78
RFX1P22670 Y_RNA.797-201ENST00000515977 94 ntBASIC3.94□□□□□ -1.78
RFX1P22670 AC025647.1-201ENST00000517879 253 ntBASIC3.94□□□□□ -1.78
RFX1P22670 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC3.94□□□□□ -1.78
RFX1P22670 MIR4744-201ENST00000581563 82 ntBASIC3.94□□□□□ -1.78
RFX1P22670 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.94□□□□□ -1.78
RFX1P22670 MIR3651-201ENST00000630427 90 ntBASIC3.94□□□□□ -1.78
RFX1P22670 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC3.94□□□□□ -1.78
RFX1P22670 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.93□□□□□ -1.78
RFX1P22670 RNU6-1205P-201ENST00000363625 106 ntBASIC3.93□□□□□ -1.78
RFX1P22670 SNORA38.1-201ENST00000364172 131 ntBASIC3.93□□□□□ -1.78
RFX1P22670 RNA5SP42-201ENST00000364278 115 ntBASIC3.93□□□□□ -1.78
RFX1P22670 Y_RNA.357-201ENST00000365487 109 ntBASIC3.93□□□□□ -1.78
RFX1P22670 RNU6-57P-201ENST00000411348 103 ntBASIC3.93□□□□□ -1.78
RFX1P22670 AC010154.1-201ENST00000425857 269 ntBASIC3.93□□□□□ -1.78
RFX1P22670 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC3.93□□□□□ -1.78
RFX1P22670 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC3.93□□□□□ -1.78
RFX1P22670 AC023141.11-201ENST00000508864 202 ntBASIC3.93□□□□□ -1.78
RFX1P22670 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.93□□□□□ -1.78
RFX1P22670 RN7SKP57-201ENST00000517248 293 ntBASIC3.93□□□□□ -1.78
RFX1P22670 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.93□□□□□ -1.78
RFX1P22670 AC008011.1-201ENST00000545989 227 ntBASIC3.93□□□□□ -1.78
RFX1P22670 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC3.93□□□□□ -1.78
RFX1P22670 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
RFX1P22670 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
RFX1P22670 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
RFX1P22670 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
RFX1P22670 Y_RNA.24-201ENST00000362508 103 ntBASIC3.92□□□□□ -1.78
RFX1P22670 RNU4-84P-201ENST00000364200 139 ntBASIC3.92□□□□□ -1.78
RFX1P22670 RNA5SP267-201ENST00000364893 126 ntBASIC3.92□□□□□ -1.78
RFX1P22670 RNU6-275P-201ENST00000364910 107 ntBASIC3.92□□□□□ -1.78
RFX1P22670 RNU6-1130P-201ENST00000365434 107 ntBASIC3.92□□□□□ -1.78
RFX1P22670 SNORD21-201ENST00000383953 95 ntBASIC3.92□□□□□ -1.78
RFX1P22670 AL138878.1-201ENST00000405131 347 ntBASIC3.92□□□□□ -1.78
RFX1P22670 SEPT7P4-201ENST00000437076 306 ntBASIC3.92□□□□□ -1.78
RFX1P22670 EEF1B2P7-201ENST00000451177 676 ntBASIC3.92□□□□□ -1.78
RFX1P22670 RPS26P55-201ENST00000471178 356 ntBASIC3.92□□□□□ -1.78
RFX1P22670 MIR4738-201ENST00000579134 87 ntBASIC3.92□□□□□ -1.78
RFX1P22670 AC090115.4-201ENST00000609970 188 ntBASIC3.92□□□□□ -1.78
RFX1P22670 MTND1P7-201ENST00000632801 297 ntBASIC3.92□□□□□ -1.78
RFX1P22670 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
RFX1P22670 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
RFX1P22670 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
RFX1P22670 MIR423-201ENST00000362201 94 ntBASIC3.91□□□□□ -1.78
RFX1P22670 SNORD116-18-201ENST00000383961 92 ntBASIC3.91□□□□□ -1.78
RFX1P22670 Y_RNA.572-201ENST00000384757 98 ntBASIC3.91□□□□□ -1.78
RFX1P22670 RNU6-578P-201ENST00000390980 103 ntBASIC3.91□□□□□ -1.78
RFX1P22670 RNU2-63P-201ENST00000410792 194 ntBASIC3.91□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 109.4 ms