Protein–RNA interactions for Protein: A0A0B4J238

TRAV1-2, T-cell receptor alpha variable 1-2 (Fragment), humanhuman

Predictions only

Length 106 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-2A0A0B4J238 AL357075.2-201ENST00000614906 189 ntBASIC-0.39□□□□□ -2.47
TRAV1-2A0A0B4J238 AC008250.2-201ENST00000615261 205 ntBASIC-0.39□□□□□ -2.47
TRAV1-2A0A0B4J238 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC-0.39□□□□□ -2.47
TRAV1-2A0A0B4J238 AP000943.4-201ENST00000622912 357 ntBASIC-0.39□□□□□ -2.47
TRAV1-2A0A0B4J238 AC073343.1-201ENST00000328239 651 ntBASIC-0.4□□□□□ -2.47
TRAV1-2A0A0B4J238 Y_RNA.85-201ENST00000363014 111 ntBASIC-0.4□□□□□ -2.47
TRAV1-2A0A0B4J238 RNU5B-4P-201ENST00000363508 111 ntBASIC-0.4□□□□□ -2.47
TRAV1-2A0A0B4J238 RNU6-654P-201ENST00000364373 107 ntBASIC-0.4□□□□□ -2.47
TRAV1-2A0A0B4J238 RNU6-923P-201ENST00000364753 107 ntBASIC-0.4□□□□□ -2.47
TRAV1-2A0A0B4J238 Y_RNA.504-201ENST00000384481 104 ntBASIC-0.4□□□□□ -2.47
TRAV1-2A0A0B4J238 RNU6-298P-201ENST00000390888 96 ntBASIC-0.4□□□□□ -2.47
TRAV1-2A0A0B4J238 MIR1302-7-201ENST00000408841 72 ntBASIC-0.4□□□□□ -2.47
TRAV1-2A0A0B4J238 RNU6-1304P-201ENST00000411374 106 ntBASIC-0.4□□□□□ -2.47
TRAV1-2A0A0B4J238 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC-0.4□□□□□ -2.47
TRAV1-2A0A0B4J238 AC008134.1-201ENST00000420943 193 ntBASIC-0.4□□□□□ -2.47
TRAV1-2A0A0B4J238 RNU7-41P-201ENST00000515917 61 ntBASIC-0.4□□□□□ -2.47
TRAV1-2A0A0B4J238 AC109479.2-201ENST00000517842 174 ntBASIC-0.4□□□□□ -2.47
TRAV1-2A0A0B4J238 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC-0.4□□□□□ -2.47
TRAV1-2A0A0B4J238 snoZ196.1-201ENST00000625269 89 ntBASIC-0.4□□□□□ -2.47
TRAV1-2A0A0B4J238 VPS35-212ENST00000640313 141 ntTSL 5 BASIC-0.4□□□□□ -2.47
TRAV1-2A0A0B4J238 Y_RNA.46-201ENST00000362695 102 ntBASIC-0.41□□□□□ -2.48
TRAV1-2A0A0B4J238 RNU6-833P-201ENST00000363486 107 ntBASIC-0.41□□□□□ -2.48
TRAV1-2A0A0B4J238 RNU6-609P-201ENST00000365459 107 ntBASIC-0.41□□□□□ -2.48
TRAV1-2A0A0B4J238 RNU6-929P-201ENST00000384429 107 ntBASIC-0.41□□□□□ -2.48
TRAV1-2A0A0B4J238 MIR593-201ENST00000384856 100 ntBASIC-0.41□□□□□ -2.48
TRAV1-2A0A0B4J238 PCNPP3-201ENST00000393579 471 ntBASIC-0.41□□□□□ -2.48
TRAV1-2A0A0B4J238 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC-0.41□□□□□ -2.48
TRAV1-2A0A0B4J238 AL606489.2-201ENST00000433886 234 ntBASIC-0.41□□□□□ -2.48
TRAV1-2A0A0B4J238 AC009237.7-201ENST00000447357 229 ntBASIC-0.41□□□□□ -2.48
TRAV1-2A0A0B4J238 HSFY5P-201ENST00000453726 309 ntBASIC-0.41□□□□□ -2.48
TRAV1-2A0A0B4J238 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC-0.41□□□□□ -2.48
TRAV1-2A0A0B4J238 AC107934.1-201ENST00000522215 217 ntBASIC-0.41□□□□□ -2.48
TRAV1-2A0A0B4J238 AP001372.4-201ENST00000524889 472 ntBASIC-0.41□□□□□ -2.48
TRAV1-2A0A0B4J238 AC123904.2-201ENST00000548059 300 ntBASIC-0.41□□□□□ -2.48
TRAV1-2A0A0B4J238 AC027288.2-201ENST00000553028 243 ntBASIC-0.41□□□□□ -2.48
TRAV1-2A0A0B4J238 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC-0.41□□□□□ -2.48
TRAV1-2A0A0B4J238 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC-0.41□□□□□ -2.48
TRAV1-2A0A0B4J238 MIR5006-201ENST00000583027 110 ntBASIC-0.41□□□□□ -2.48
TRAV1-2A0A0B4J238 AC008521.1-201ENST00000587471 187 ntBASIC-0.41□□□□□ -2.48
TRAV1-2A0A0B4J238 AC091965.4-201ENST00000607691 587 ntBASIC-0.41□□□□□ -2.48
TRAV1-2A0A0B4J238 AC072039.2-201ENST00000608883 439 ntBASIC-0.41□□□□□ -2.48
TRAV1-2A0A0B4J238 TCL6_2.1-201ENST00000615162 119 ntBASIC-0.41□□□□□ -2.48
TRAV1-2A0A0B4J238 AL356596.1-201ENST00000624230 379 ntBASIC-0.41□□□□□ -2.48
TRAV1-2A0A0B4J238 Clostridiales-1.4-201ENST00000636807 150 ntBASIC-0.41□□□□□ -2.48
TRAV1-2A0A0B4J238 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC-0.41□□□□□ -2.48
TRAV1-2A0A0B4J238 RNU6-1305P-201ENST00000364353 104 ntBASIC-0.42□□□□□ -2.48
TRAV1-2A0A0B4J238 SNORA67.2-201ENST00000384300 149 ntBASIC-0.42□□□□□ -2.48
TRAV1-2A0A0B4J238 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC-0.42□□□□□ -2.48
TRAV1-2A0A0B4J238 MTND2P3-201ENST00000452458 470 ntBASIC-0.42□□□□□ -2.48
TRAV1-2A0A0B4J238 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC-0.42□□□□□ -2.48
TRAV1-2A0A0B4J238 HMGN2P26-201ENST00000463169 339 ntBASIC-0.42□□□□□ -2.48
TRAV1-2A0A0B4J238 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC-0.42□□□□□ -2.48
TRAV1-2A0A0B4J238 AC117522.1-201ENST00000509821 380 ntBASIC-0.42□□□□□ -2.48
TRAV1-2A0A0B4J238 RNU6-320P-201ENST00000516511 106 ntBASIC-0.42□□□□□ -2.48
TRAV1-2A0A0B4J238 RNU7-51P-201ENST00000516560 62 ntBASIC-0.42□□□□□ -2.48
TRAV1-2A0A0B4J238 RNU7-28P-201ENST00000516759 62 ntBASIC-0.42□□□□□ -2.48
TRAV1-2A0A0B4J238 IGLVI-20-201ENST00000519296 130 ntBASIC-0.42□□□□□ -2.48
TRAV1-2A0A0B4J238 AC023050.3-201ENST00000541142 333 ntBASIC-0.42□□□□□ -2.48
TRAV1-2A0A0B4J238 MIR548AO-201ENST00000579992 96 ntBASIC-0.42□□□□□ -2.48
TRAV1-2A0A0B4J238 MIR3124-201ENST00000582636 67 ntBASIC-0.42□□□□□ -2.48
TRAV1-2A0A0B4J238 uc_338.16-201ENST00000621804 95 ntBASIC-0.42□□□□□ -2.48
TRAV1-2A0A0B4J238 AL008636.1-201ENST00000625038 1018 ntBASIC-0.42□□□□□ -2.48
TRAV1-2A0A0B4J238 AC006927.2-201ENST00000639256 389 ntBASIC-0.42□□□□□ -2.48
TRAV1-2A0A0B4J238 RNA5SP325-201ENST00000363756 130 ntBASIC-0.43□□□□□ -2.48
TRAV1-2A0A0B4J238 RNU6-560P-201ENST00000364007 108 ntBASIC-0.43□□□□□ -2.48
TRAV1-2A0A0B4J238 Y_RNA.265-201ENST00000364677 108 ntBASIC-0.43□□□□□ -2.48
TRAV1-2A0A0B4J238 Y_RNA.324-201ENST00000365165 102 ntBASIC-0.43□□□□□ -2.48
TRAV1-2A0A0B4J238 SNORA2B-201ENST00000384583 137 ntBASIC-0.43□□□□□ -2.48
TRAV1-2A0A0B4J238 RNU6-1319P-201ENST00000390855 104 ntBASIC-0.43□□□□□ -2.48
TRAV1-2A0A0B4J238 RNU6-127P-201ENST00000390897 107 ntBASIC-0.43□□□□□ -2.48
TRAV1-2A0A0B4J238 RNU6-747P-201ENST00000390928 104 ntBASIC-0.43□□□□□ -2.48
TRAV1-2A0A0B4J238 RNU6-241P-201ENST00000391148 104 ntBASIC-0.43□□□□□ -2.48
TRAV1-2A0A0B4J238 RNU6ATAC11P-201ENST00000408541 125 ntBASIC-0.43□□□□□ -2.48
TRAV1-2A0A0B4J238 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC-0.43□□□□□ -2.48
TRAV1-2A0A0B4J238 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC-0.43□□□□□ -2.48
TRAV1-2A0A0B4J238 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC-0.43□□□□□ -2.48
TRAV1-2A0A0B4J238 AC074290.1-201ENST00000448883 135 ntBASIC-0.43□□□□□ -2.48
TRAV1-2A0A0B4J238 AC104692.1-201ENST00000472406 90 ntBASIC-0.43□□□□□ -2.48
TRAV1-2A0A0B4J238 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC-0.43□□□□□ -2.48
TRAV1-2A0A0B4J238 RNA5SP268-201ENST00000516828 124 ntBASIC-0.43□□□□□ -2.48
TRAV1-2A0A0B4J238 RNU2-46P-201ENST00000517038 113 ntBASIC-0.43□□□□□ -2.48
TRAV1-2A0A0B4J238 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC-0.43□□□□□ -2.48
TRAV1-2A0A0B4J238 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC-0.43□□□□□ -2.48
TRAV1-2A0A0B4J238 AC087894.1-201ENST00000538359 518 ntBASIC-0.43□□□□□ -2.48
TRAV1-2A0A0B4J238 AK6P2-201ENST00000549020 471 ntBASIC-0.43□□□□□ -2.48
TRAV1-2A0A0B4J238 AC026470.2-201ENST00000561492 181 ntBASIC-0.43□□□□□ -2.48
TRAV1-2A0A0B4J238 AC068790.2-201ENST00000602601 557 ntBASIC-0.43□□□□□ -2.48
TRAV1-2A0A0B4J238 AC092447.9-201ENST00000603395 144 ntBASIC-0.43□□□□□ -2.48
TRAV1-2A0A0B4J238 MIR6755-201ENST00000619993 66 ntBASIC-0.43□□□□□ -2.48
TRAV1-2A0A0B4J238 AC005592.1-201ENST00000566527 1640 ntBASIC-0.43□□□□□ -2.48
TRAV1-2A0A0B4J238 SNORD114-31-201ENST00000363219 75 ntBASIC-0.44□□□□□ -2.48
TRAV1-2A0A0B4J238 RNU6-1099P-201ENST00000363533 107 ntBASIC-0.44□□□□□ -2.48
TRAV1-2A0A0B4J238 SNORA24.1-201ENST00000384401 135 ntBASIC-0.44□□□□□ -2.48
TRAV1-2A0A0B4J238 USP9YP21-201ENST00000420603 432 ntBASIC-0.44□□□□□ -2.48
TRAV1-2A0A0B4J238 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC-0.44□□□□□ -2.48
TRAV1-2A0A0B4J238 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC-0.44□□□□□ -2.48
TRAV1-2A0A0B4J238 SNORD4A-201ENST00000459174 72 ntBASIC-0.44□□□□□ -2.48
TRAV1-2A0A0B4J238 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC-0.44□□□□□ -2.48
TRAV1-2A0A0B4J238 AL158211.1-201ENST00000566763 763 ntBASIC-0.44□□□□□ -2.48
TRAV1-2A0A0B4J238 AP001836.1-201ENST00000604675 523 ntBASIC-0.44□□□□□ -2.48
Retrieved 100 of 98,524 protein–RNA pairs in 108.3 ms