Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 RNY3P15-201ENST00000516297 97 ntBASIC2.89□□□□□ -1.95
LIMCH1Q9UPQ0 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC2.89□□□□□ -1.95
LIMCH1Q9UPQ0 SNORD11B-201ENST00000607707 90 ntBASIC2.89□□□□□ -1.95
LIMCH1Q9UPQ0 U6.104-201ENST00000637979 90 ntBASIC2.89□□□□□ -1.95
LIMCH1Q9UPQ0 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC2.89□□□□□ -1.95
LIMCH1Q9UPQ0 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.88□□□□□ -1.95
LIMCH1Q9UPQ0 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.88□□□□□ -1.95
LIMCH1Q9UPQ0 MIR21-201ENST00000362134 72 ntBASIC2.88□□□□□ -1.95
LIMCH1Q9UPQ0 RNU6-238P-201ENST00000363313 106 ntBASIC2.88□□□□□ -1.95
LIMCH1Q9UPQ0 SET-203ENST00000372688 801 ntTSL 2 BASIC2.88□□□□□ -1.95
LIMCH1Q9UPQ0 Y_RNA.462-201ENST00000384268 102 ntBASIC2.88□□□□□ -1.95
LIMCH1Q9UPQ0 MIR568-201ENST00000385036 95 ntBASIC2.88□□□□□ -1.95
LIMCH1Q9UPQ0 MIR549A-201ENST00000385268 96 ntBASIC2.88□□□□□ -1.95
LIMCH1Q9UPQ0 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.88□□□□□ -1.95
LIMCH1Q9UPQ0 RNU6-220P-201ENST00000390919 107 ntBASIC2.88□□□□□ -1.95
LIMCH1Q9UPQ0 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC2.88□□□□□ -1.95
LIMCH1Q9UPQ0 DYNLT3P2-201ENST00000442517 295 ntBASIC2.88□□□□□ -1.95
LIMCH1Q9UPQ0 IFNA11P-201ENST00000446352 526 ntBASIC2.88□□□□□ -1.95
LIMCH1Q9UPQ0 UQCRBP2-201ENST00000447827 297 ntBASIC2.88□□□□□ -1.95
LIMCH1Q9UPQ0 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC2.88□□□□□ -1.95
LIMCH1Q9UPQ0 SNORA48.11-201ENST00000517015 89 ntBASIC2.88□□□□□ -1.95
LIMCH1Q9UPQ0 AL161670.1-201ENST00000554348 137 ntBASIC2.88□□□□□ -1.95
LIMCH1Q9UPQ0 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.88□□□□□ -1.95
LIMCH1Q9UPQ0 LARP7P3-201ENST00000579888 337 ntBASIC2.88□□□□□ -1.95
LIMCH1Q9UPQ0 MIR4503-201ENST00000582187 83 ntBASIC2.88□□□□□ -1.95
LIMCH1Q9UPQ0 MZT1P2-201ENST00000604387 248 ntBASIC2.88□□□□□ -1.95
LIMCH1Q9UPQ0 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.88□□□□□ -1.95
LIMCH1Q9UPQ0 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
LIMCH1Q9UPQ0 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
LIMCH1Q9UPQ0 LINC02555-201ENST00000563933 1951 ntBASIC2.87□□□□□ -1.95
LIMCH1Q9UPQ0 Y_RNA.19-201ENST00000362462 99 ntBASIC2.87□□□□□ -1.95
LIMCH1Q9UPQ0 RNU6-944P-201ENST00000364023 107 ntBASIC2.87□□□□□ -1.95
LIMCH1Q9UPQ0 RNU6-1180P-201ENST00000364935 107 ntBASIC2.87□□□□□ -1.95
LIMCH1Q9UPQ0 RNU6-926P-201ENST00000384075 107 ntBASIC2.87□□□□□ -1.95
LIMCH1Q9UPQ0 SNORD63-201ENST00000384262 68 ntBASIC2.87□□□□□ -1.95
LIMCH1Q9UPQ0 AL079342.1-201ENST00000401460 267 ntBASIC2.87□□□□□ -1.95
LIMCH1Q9UPQ0 RNU2-25P-201ENST00000411041 191 ntBASIC2.87□□□□□ -1.95
LIMCH1Q9UPQ0 RNU5A-5P-201ENST00000411054 116 ntBASIC2.87□□□□□ -1.95
LIMCH1Q9UPQ0 RNU6-130P-201ENST00000411112 103 ntBASIC2.87□□□□□ -1.95
LIMCH1Q9UPQ0 AL445687.1-201ENST00000439946 251 ntBASIC2.87□□□□□ -1.95
LIMCH1Q9UPQ0 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC2.87□□□□□ -1.95
LIMCH1Q9UPQ0 TRAPPC2P8-201ENST00000440676 396 ntBASIC2.87□□□□□ -1.95
LIMCH1Q9UPQ0 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.87□□□□□ -1.95
LIMCH1Q9UPQ0 RNU5F-4P-201ENST00000516581 114 ntBASIC2.87□□□□□ -1.95
LIMCH1Q9UPQ0 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.87□□□□□ -1.95
LIMCH1Q9UPQ0 DEFB131C-201ENST00000528817 165 ntBASIC2.87□□□□□ -1.95
LIMCH1Q9UPQ0 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC2.87□□□□□ -1.95
LIMCH1Q9UPQ0 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.87□□□□□ -1.95
LIMCH1Q9UPQ0 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC2.87□□□□□ -1.95
LIMCH1Q9UPQ0 U4.1-201ENST00000620349 87 ntBASIC2.87□□□□□ -1.95
LIMCH1Q9UPQ0 U4.3-201ENST00000621047 82 ntBASIC2.87□□□□□ -1.95
LIMCH1Q9UPQ0 TTK-211ENST00000627129 240 ntTSL 5 BASIC2.87□□□□□ -1.95
LIMCH1Q9UPQ0 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
LIMCH1Q9UPQ0 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.86□□□□□ -1.95
LIMCH1Q9UPQ0 RNU6-546P-201ENST00000383991 107 ntBASIC2.86□□□□□ -1.95
LIMCH1Q9UPQ0 Y_RNA.498-201ENST00000384460 102 ntBASIC2.86□□□□□ -1.95
LIMCH1Q9UPQ0 MIR518C-201ENST00000384822 101 ntBASIC2.86□□□□□ -1.95
LIMCH1Q9UPQ0 MIR561-201ENST00000385216 97 ntBASIC2.86□□□□□ -1.95
LIMCH1Q9UPQ0 AL033519.2-201ENST00000403958 392 ntBASIC2.86□□□□□ -1.95
LIMCH1Q9UPQ0 HMGN2P35-201ENST00000412164 270 ntBASIC2.86□□□□□ -1.95
LIMCH1Q9UPQ0 AL390729.2-201ENST00000416137 156 ntBASIC2.86□□□□□ -1.95
LIMCH1Q9UPQ0 AC003685.2-201ENST00000422795 395 ntBASIC2.86□□□□□ -1.95
LIMCH1Q9UPQ0 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC2.86□□□□□ -1.95
LIMCH1Q9UPQ0 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.86□□□□□ -1.95
LIMCH1Q9UPQ0 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.86□□□□□ -1.95
LIMCH1Q9UPQ0 EIF4BP1-201ENST00000554881 351 ntBASIC2.86□□□□□ -1.95
LIMCH1Q9UPQ0 AC004817.2-201ENST00000561794 651 ntBASIC2.86□□□□□ -1.95
LIMCH1Q9UPQ0 AC023824.2-201ENST00000566185 400 ntBASIC2.86□□□□□ -1.95
LIMCH1Q9UPQ0 AL355297.2-201ENST00000604792 129 ntBASIC2.86□□□□□ -1.95
LIMCH1Q9UPQ0 AC067747.1-201ENST00000608026 250 ntBASIC2.86□□□□□ -1.95
LIMCH1Q9UPQ0 AL137847.3-201ENST00000611521 109 ntBASIC2.86□□□□□ -1.95
LIMCH1Q9UPQ0 AC011476.5-201ENST00000615594 130 ntBASIC2.86□□□□□ -1.95
LIMCH1Q9UPQ0 AC068205.3-201ENST00000636385 468 ntBASIC2.86□□□□□ -1.95
LIMCH1Q9UPQ0 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC2.86□□□□□ -1.95
LIMCH1Q9UPQ0 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
LIMCH1Q9UPQ0 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.85□□□□□ -1.95
LIMCH1Q9UPQ0 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC2.85□□□□□ -1.95
LIMCH1Q9UPQ0 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC2.85□□□□□ -1.95
LIMCH1Q9UPQ0 Y_RNA.230-201ENST00000364348 109 ntBASIC2.85□□□□□ -1.95
LIMCH1Q9UPQ0 RNU6-1310P-201ENST00000384153 107 ntBASIC2.85□□□□□ -1.95
LIMCH1Q9UPQ0 Y_RNA.452-201ENST00000384202 108 ntBASIC2.85□□□□□ -1.95
LIMCH1Q9UPQ0 RNU6-574P-201ENST00000384265 107 ntBASIC2.85□□□□□ -1.95
LIMCH1Q9UPQ0 SNORD115-46-201ENST00000390982 71 ntBASIC2.85□□□□□ -1.95
LIMCH1Q9UPQ0 MIR300-201ENST00000401138 83 ntBASIC2.85□□□□□ -1.95
LIMCH1Q9UPQ0 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC2.85□□□□□ -1.95
LIMCH1Q9UPQ0 NDUFB4P10-201ENST00000452541 359 ntBASIC2.85□□□□□ -1.95
LIMCH1Q9UPQ0 AP001486.1-201ENST00000463339 476 ntBASIC2.85□□□□□ -1.95
LIMCH1Q9UPQ0 RPL26P26-201ENST00000480251 434 ntBASIC2.85□□□□□ -1.95
LIMCH1Q9UPQ0 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.85□□□□□ -1.95
LIMCH1Q9UPQ0 AC025465.3-201ENST00000510570 311 ntBASIC2.85□□□□□ -1.95
LIMCH1Q9UPQ0 RNU6-408P-201ENST00000515910 100 ntBASIC2.85□□□□□ -1.95
LIMCH1Q9UPQ0 SNORA31.15-201ENST00000516771 132 ntBASIC2.85□□□□□ -1.95
LIMCH1Q9UPQ0 RNA5SP402-201ENST00000517148 110 ntBASIC2.85□□□□□ -1.95
LIMCH1Q9UPQ0 RN7SKP40-201ENST00000517211 242 ntBASIC2.85□□□□□ -1.95
LIMCH1Q9UPQ0 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC2.85□□□□□ -1.95
LIMCH1Q9UPQ0 AC022616.8-201ENST00000533569 253 ntBASIC2.85□□□□□ -1.95
LIMCH1Q9UPQ0 AC018448.1-201ENST00000552843 316 ntBASIC2.85□□□□□ -1.95
LIMCH1Q9UPQ0 MYL12BP1-201ENST00000569826 507 ntBASIC2.85□□□□□ -1.95
LIMCH1Q9UPQ0 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC2.85□□□□□ -1.95
LIMCH1Q9UPQ0 MIR376A1-201ENST00000616574 68 ntBASIC2.85□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 121.1 ms