Protein–RNA interactions for Protein: Q9BZI7

UPF3B, Regulator of nonsense transcripts 3B, humanhuman

Known RBP Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3BQ9BZI7 MTCO2P23-201ENST00000425216 680 ntBASIC0.47□□□□□ -2.33
UPF3BQ9BZI7 AL356583.2-201ENST00000426536 280 ntBASIC0.47□□□□□ -2.33
UPF3BQ9BZI7 TIMM9P3-201ENST00000428659 274 ntBASIC0.47□□□□□ -2.33
UPF3BQ9BZI7 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC0.47□□□□□ -2.33
UPF3BQ9BZI7 MTCO2P6-201ENST00000463134 685 ntBASIC0.47□□□□□ -2.33
UPF3BQ9BZI7 RNU6-1178P-201ENST00000516674 107 ntBASIC0.47□□□□□ -2.33
UPF3BQ9BZI7 MIR4999-201ENST00000585029 91 ntBASIC0.47□□□□□ -2.33
UPF3BQ9BZI7 AP000811.1-201ENST00000603803 651 ntBASIC0.47□□□□□ -2.33
UPF3BQ9BZI7 AC022217.4-201ENST00000604389 163 ntBASIC0.47□□□□□ -2.33
UPF3BQ9BZI7 AL359075.3-201ENST00000613288 217 ntBASIC0.47□□□□□ -2.33
UPF3BQ9BZI7 AC106754.2-201ENST00000623006 233 ntBASIC0.47□□□□□ -2.33
UPF3BQ9BZI7 AC068787.1-201ENST00000623908 691 ntBASIC0.47□□□□□ -2.33
UPF3BQ9BZI7 U6.108-201ENST00000637764 58 ntBASIC0.47□□□□□ -2.33
UPF3BQ9BZI7 RNU6-1287P-201ENST00000362914 107 ntBASIC0.46□□□□□ -2.34
UPF3BQ9BZI7 SNORD18A-201ENST00000363753 72 ntBASIC0.46□□□□□ -2.34
UPF3BQ9BZI7 RNU6-169P-201ENST00000365336 107 ntBASIC0.46□□□□□ -2.34
UPF3BQ9BZI7 RNU6-1060P-201ENST00000384664 107 ntBASIC0.46□□□□□ -2.34
UPF3BQ9BZI7 MRPL42P3-201ENST00000401492 326 ntBASIC0.46□□□□□ -2.34
UPF3BQ9BZI7 MTND3P17-201ENST00000416968 344 ntBASIC0.46□□□□□ -2.34
UPF3BQ9BZI7 AL035398.1-201ENST00000430869 322 ntBASIC0.46□□□□□ -2.34
UPF3BQ9BZI7 AC009237.7-201ENST00000447357 229 ntBASIC0.46□□□□□ -2.34
UPF3BQ9BZI7 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC0.46□□□□□ -2.34
UPF3BQ9BZI7 RPL39P39-201ENST00000455840 151 ntBASIC0.46□□□□□ -2.34
UPF3BQ9BZI7 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC0.46□□□□□ -2.34
UPF3BQ9BZI7 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC0.46□□□□□ -2.34
UPF3BQ9BZI7 SCARNA24.1-201ENST00000516465 137 ntBASIC0.46□□□□□ -2.34
UPF3BQ9BZI7 MTCO3P23-201ENST00000561363 289 ntBASIC0.46□□□□□ -2.34
UPF3BQ9BZI7 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC0.46□□□□□ -2.34
UPF3BQ9BZI7 MTND1P15-201ENST00000579262 949 ntBASIC0.46□□□□□ -2.34
UPF3BQ9BZI7 AC080078.2-201ENST00000603766 501 ntBASIC0.46□□□□□ -2.34
UPF3BQ9BZI7 AC018714.1-201ENST00000605028 208 ntBASIC0.46□□□□□ -2.34
UPF3BQ9BZI7 PRELID3BP2-201ENST00000605362 201 ntBASIC0.46□□□□□ -2.34
UPF3BQ9BZI7 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC0.46□□□□□ -2.34
UPF3BQ9BZI7 AL603839.4-201ENST00000624658 1005 ntBASIC0.46□□□□□ -2.34
UPF3BQ9BZI7 AC006927.3-201ENST00000638789 384 ntBASIC0.46□□□□□ -2.34
UPF3BQ9BZI7 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC0.46□□□□□ -2.34
UPF3BQ9BZI7 SNORA20.2-201ENST00000383922 131 ntBASIC0.45□□□□□ -2.34
UPF3BQ9BZI7 RNU6-1200P-201ENST00000384162 107 ntBASIC0.45□□□□□ -2.34
UPF3BQ9BZI7 RNU4-46P-201ENST00000410818 138 ntBASIC0.45□□□□□ -2.34
UPF3BQ9BZI7 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC0.45□□□□□ -2.34
UPF3BQ9BZI7 AL606662.1-201ENST00000445763 553 ntBASIC0.45□□□□□ -2.34
UPF3BQ9BZI7 HMGB1P29-201ENST00000505659 499 ntBASIC0.45□□□□□ -2.34
UPF3BQ9BZI7 RNU6-1069P-201ENST00000516612 133 ntBASIC0.45□□□□□ -2.34
UPF3BQ9BZI7 SNORA25.17-201ENST00000517184 124 ntBASIC0.45□□□□□ -2.34
UPF3BQ9BZI7 AC022878.1-201ENST00000530684 149 ntBASIC0.45□□□□□ -2.34
UPF3BQ9BZI7 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC0.45□□□□□ -2.34
UPF3BQ9BZI7 AC025627.3-201ENST00000582078 182 ntBASIC0.45□□□□□ -2.34
UPF3BQ9BZI7 AL627230.5-201ENST00000619807 58 ntBASIC0.45□□□□□ -2.34
UPF3BQ9BZI7 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.44□□□□□ -2.34
UPF3BQ9BZI7 RNU6-199P-201ENST00000362954 107 ntBASIC0.44□□□□□ -2.34
UPF3BQ9BZI7 RNU6-434P-201ENST00000384376 107 ntBASIC0.44□□□□□ -2.34
UPF3BQ9BZI7 MIR549A-201ENST00000385268 96 ntBASIC0.44□□□□□ -2.34
UPF3BQ9BZI7 RNU6-440P-201ENST00000390882 105 ntBASIC0.44□□□□□ -2.34
UPF3BQ9BZI7 AL031577.2-201ENST00000404133 280 ntBASIC0.44□□□□□ -2.34
UPF3BQ9BZI7 AC008134.1-201ENST00000420943 193 ntBASIC0.44□□□□□ -2.34
UPF3BQ9BZI7 AC090572.1-201ENST00000519251 160 ntBASIC0.44□□□□□ -2.34
UPF3BQ9BZI7 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC0.44□□□□□ -2.34
UPF3BQ9BZI7 AC103996.1-201ENST00000555468 102 ntBASIC0.44□□□□□ -2.34
UPF3BQ9BZI7 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC0.44□□□□□ -2.34
UPF3BQ9BZI7 Z99497.2-201ENST00000603634 310 ntBASIC0.44□□□□□ -2.34
UPF3BQ9BZI7 RNU4-5P-201ENST00000607255 135 ntBASIC0.44□□□□□ -2.34
UPF3BQ9BZI7 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC0.44□□□□□ -2.34
UPF3BQ9BZI7 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC0.44□□□□□ -2.34
UPF3BQ9BZI7 AC009159.2-201ENST00000617603 606 ntBASIC0.44□□□□□ -2.34
UPF3BQ9BZI7 AC006001.4-201ENST00000622243 395 ntBASIC0.44□□□□□ -2.34
UPF3BQ9BZI7 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.43□□□□□ -2.34
UPF3BQ9BZI7 RNU5F-6P-201ENST00000362979 116 ntBASIC0.43□□□□□ -2.34
UPF3BQ9BZI7 RNU4-67P-201ENST00000364569 141 ntBASIC0.43□□□□□ -2.34
UPF3BQ9BZI7 RNU6-827P-201ENST00000365553 106 ntBASIC0.43□□□□□ -2.34
UPF3BQ9BZI7 SNORA12.1-201ENST00000390873 148 ntBASIC0.43□□□□□ -2.34
UPF3BQ9BZI7 AL451046.2-201ENST00000403074 277 ntBASIC0.43□□□□□ -2.34
UPF3BQ9BZI7 Z99497.1-201ENST00000421282 135 ntBASIC0.43□□□□□ -2.34
UPF3BQ9BZI7 AL354692.1-201ENST00000423044 315 ntBASIC0.43□□□□□ -2.34
UPF3BQ9BZI7 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC0.43□□□□□ -2.34
UPF3BQ9BZI7 AL365184.2-201ENST00000431139 435 ntBASIC0.43□□□□□ -2.34
UPF3BQ9BZI7 AC079781.2-201ENST00000446424 169 ntBASIC0.43□□□□□ -2.34
UPF3BQ9BZI7 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC0.43□□□□□ -2.34
UPF3BQ9BZI7 GMFBP1-201ENST00000467831 427 ntBASIC0.43□□□□□ -2.34
UPF3BQ9BZI7 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC0.43□□□□□ -2.34
UPF3BQ9BZI7 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC0.43□□□□□ -2.34
UPF3BQ9BZI7 RNU6-947P-201ENST00000516264 106 ntBASIC0.43□□□□□ -2.34
UPF3BQ9BZI7 RNU6-1220P-201ENST00000517126 108 ntBASIC0.43□□□□□ -2.34
UPF3BQ9BZI7 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC0.43□□□□□ -2.34
UPF3BQ9BZI7 AC099654.13-201ENST00000639774 207 ntBASIC0.43□□□□□ -2.34
UPF3BQ9BZI7 ANKRD30BP1-201ENST00000451052 2186 ntBASIC0.43□□□□□ -2.34
UPF3BQ9BZI7 SNORA2.2-201ENST00000365473 135 ntBASIC0.42□□□□□ -2.34
UPF3BQ9BZI7 RNU6-393P-201ENST00000384475 107 ntBASIC0.42□□□□□ -2.34
UPF3BQ9BZI7 SNORA40.4-201ENST00000390971 128 ntBASIC0.42□□□□□ -2.34
UPF3BQ9BZI7 SNORA16.2-201ENST00000390991 127 ntBASIC0.42□□□□□ -2.34
UPF3BQ9BZI7 RPEP5-201ENST00000441137 268 ntBASIC0.42□□□□□ -2.34
UPF3BQ9BZI7 AC004386.2-201ENST00000441858 148 ntBASIC0.42□□□□□ -2.34
UPF3BQ9BZI7 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC0.42□□□□□ -2.34
UPF3BQ9BZI7 AL031274.1-201ENST00000450334 232 ntBASIC0.42□□□□□ -2.34
UPF3BQ9BZI7 RNU7-94P-201ENST00000459576 63 ntBASIC0.42□□□□□ -2.34
UPF3BQ9BZI7 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC0.42□□□□□ -2.34
UPF3BQ9BZI7 AC106038.2-201ENST00000520706 568 ntBASIC0.42□□□□□ -2.34
UPF3BQ9BZI7 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC0.42□□□□□ -2.34
UPF3BQ9BZI7 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC0.42□□□□□ -2.34
UPF3BQ9BZI7 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC0.42□□□□□ -2.34
UPF3BQ9BZI7 MIR5006-201ENST00000583027 110 ntBASIC0.42□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 113.4 ms