Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC1.31□□□□□ -2.2
CDX2Q99626 RNU6-527P-201ENST00000363425 104 ntBASIC1.31□□□□□ -2.2
CDX2Q99626 Y_RNA.184-201ENST00000363884 108 ntBASIC1.31□□□□□ -2.2
CDX2Q99626 RNU6-266P-201ENST00000364225 107 ntBASIC1.31□□□□□ -2.2
CDX2Q99626 RNU4-66P-201ENST00000365199 138 ntBASIC1.31□□□□□ -2.2
CDX2Q99626 Y_RNA.332-201ENST00000365271 113 ntBASIC1.31□□□□□ -2.2
CDX2Q99626 Y_RNA.373-201ENST00000365600 103 ntBASIC1.31□□□□□ -2.2
CDX2Q99626 RNU6-877P-201ENST00000383868 107 ntBASIC1.31□□□□□ -2.2
CDX2Q99626 RNU6-142P-201ENST00000384019 107 ntBASIC1.31□□□□□ -2.2
CDX2Q99626 SNORA32.2-201ENST00000384049 122 ntBASIC1.31□□□□□ -2.2
CDX2Q99626 SNORA48.1-201ENST00000390879 135 ntBASIC1.31□□□□□ -2.2
CDX2Q99626 RNU4-14P-201ENST00000410858 122 ntBASIC1.31□□□□□ -2.2
CDX2Q99626 RNU6-293P-201ENST00000411259 106 ntBASIC1.31□□□□□ -2.2
CDX2Q99626 AL121601.2-201ENST00000438019 707 ntBASIC1.31□□□□□ -2.2
CDX2Q99626 MTCO2P3-201ENST00000442543 421 ntBASIC1.31□□□□□ -2.2
CDX2Q99626 SCARNA18-201ENST00000459004 134 ntBASIC1.31□□□□□ -2.2
CDX2Q99626 MTND4P17-201ENST00000470444 350 ntBASIC1.31□□□□□ -2.2
CDX2Q99626 AC021146.2-201ENST00000504736 556 ntBASIC1.31□□□□□ -2.2
CDX2Q99626 AC105417.1-201ENST00000514691 285 ntBASIC1.31□□□□□ -2.2
CDX2Q99626 RNU6-377P-201ENST00000515965 102 ntBASIC1.31□□□□□ -2.2
CDX2Q99626 SNORA31.16-201ENST00000516773 139 ntBASIC1.31□□□□□ -2.2
CDX2Q99626 RNU6-1088P-201ENST00000516850 104 ntBASIC1.31□□□□□ -2.2
CDX2Q99626 RNU6-273P-201ENST00000516937 96 ntBASIC1.31□□□□□ -2.2
CDX2Q99626 AF235103.2-201ENST00000525753 346 ntBASIC1.31□□□□□ -2.2
CDX2Q99626 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC1.31□□□□□ -2.2
CDX2Q99626 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC1.31□□□□□ -2.2
CDX2Q99626 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC1.31□□□□□ -2.2
CDX2Q99626 MIR3136-201ENST00000583498 78 ntBASIC1.31□□□□□ -2.2
CDX2Q99626 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC1.31□□□□□ -2.2
CDX2Q99626 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.31□□□□□ -2.2
CDX2Q99626 AL020996.3-201ENST00000606617 222 ntBASIC1.31□□□□□ -2.2
CDX2Q99626 AC006504.8-201ENST00000621046 635 ntBASIC1.31□□□□□ -2.2
CDX2Q99626 AC005609.4-201ENST00000625071 447 ntBASIC1.31□□□□□ -2.2
CDX2Q99626 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.31□□□□□ -2.2
CDX2Q99626 SNORD98-201ENST00000636377 67 ntBASIC1.31□□□□□ -2.2
CDX2Q99626 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.31□□□□□ -2.2
CDX2Q99626 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
CDX2Q99626 SNORD115-3-201ENST00000363100 82 ntBASIC1.3□□□□□ -2.2
CDX2Q99626 Y_RNA.279-201ENST00000364763 95 ntBASIC1.3□□□□□ -2.2
CDX2Q99626 Y_RNA.394-201ENST00000383942 103 ntBASIC1.3□□□□□ -2.2
CDX2Q99626 Y_RNA.473-201ENST00000384333 102 ntBASIC1.3□□□□□ -2.2
CDX2Q99626 SNORA12-201ENST00000391162 147 ntBASIC1.3□□□□□ -2.2
CDX2Q99626 BTF3L4P2-201ENST00000392798 346 ntBASIC1.3□□□□□ -2.2
CDX2Q99626 RN7SKP51-201ENST00000410781 304 ntBASIC1.3□□□□□ -2.2
CDX2Q99626 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC1.3□□□□□ -2.2
CDX2Q99626 TIMM9P3-201ENST00000428659 274 ntBASIC1.3□□□□□ -2.2
CDX2Q99626 AL133396.1-201ENST00000432048 687 ntBASIC1.3□□□□□ -2.2
CDX2Q99626 SEPT14P3-201ENST00000439401 183 ntBASIC1.3□□□□□ -2.2
CDX2Q99626 AL732372.2-207ENST00000445840 183 ntBASIC1.3□□□□□ -2.2
CDX2Q99626 AL035666.1-201ENST00000446195 348 ntBASIC1.3□□□□□ -2.2
CDX2Q99626 SEPT14P2-201ENST00000453405 183 ntBASIC1.3□□□□□ -2.2
CDX2Q99626 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC1.3□□□□□ -2.2
CDX2Q99626 AC007547.1-201ENST00000462177 490 ntBASIC1.3□□□□□ -2.2
CDX2Q99626 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC1.3□□□□□ -2.2
CDX2Q99626 PRDX4P1-201ENST00000507189 574 ntBASIC1.3□□□□□ -2.2
CDX2Q99626 SEPT14P4-201ENST00000513445 186 ntBASIC1.3□□□□□ -2.2
CDX2Q99626 RNU4-49P-201ENST00000516080 140 ntBASIC1.3□□□□□ -2.2
CDX2Q99626 RNU6-875P-201ENST00000516488 106 ntBASIC1.3□□□□□ -2.2
CDX2Q99626 FO082796.1-201ENST00000523795 183 ntBASIC1.3□□□□□ -2.2
CDX2Q99626 CENPUP1-201ENST00000526649 1202 ntBASIC1.3□□□□□ -2.2
CDX2Q99626 AL137161.1-201ENST00000532231 390 ntBASIC1.3□□□□□ -2.2
CDX2Q99626 RAB11AP2-201ENST00000545905 639 ntBASIC1.3□□□□□ -2.2
CDX2Q99626 AC090115.3-201ENST00000553218 849 ntBASIC1.3□□□□□ -2.2
CDX2Q99626 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC1.3□□□□□ -2.2
CDX2Q99626 MIR3198-2-201ENST00000577868 80 ntBASIC1.3□□□□□ -2.2
CDX2Q99626 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC1.3□□□□□ -2.2
CDX2Q99626 AL356157.2-201ENST00000605122 111 ntBASIC1.3□□□□□ -2.2
CDX2Q99626 AC092807.2-201ENST00000609367 243 ntBASIC1.3□□□□□ -2.2
CDX2Q99626 FAM157A-202ENST00000615155 405 ntBASIC1.3□□□□□ -2.2
CDX2Q99626 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC1.3□□□□□ -2.2
CDX2Q99626 AC104260.1-201ENST00000616660 539 ntBASIC1.3□□□□□ -2.2
CDX2Q99626 uc_338.34-201ENST00000617467 174 ntBASIC1.3□□□□□ -2.2
CDX2Q99626 AC009248.2-201ENST00000619826 254 ntBASIC1.3□□□□□ -2.2
CDX2Q99626 AC112487.2-201ENST00000637950 304 ntBASIC1.3□□□□□ -2.2
CDX2Q99626 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.3□□□□□ -2.2
CDX2Q99626 MIR373-201ENST00000362273 69 ntBASIC1.29□□□□□ -2.2
CDX2Q99626 Y_RNA.231-201ENST00000364358 102 ntBASIC1.29□□□□□ -2.2
CDX2Q99626 SNORD81.2-201ENST00000365153 76 ntBASIC1.29□□□□□ -2.2
CDX2Q99626 Y_RNA.529-201ENST00000384586 119 ntBASIC1.29□□□□□ -2.2
CDX2Q99626 RNA5SP219-201ENST00000390940 113 ntBASIC1.29□□□□□ -2.2
CDX2Q99626 AL078595.1-201ENST00000404458 226 ntBASIC1.29□□□□□ -2.2
CDX2Q99626 AL606923.1-201ENST00000406616 190 ntBASIC1.29□□□□□ -2.2
CDX2Q99626 RNA5SP100-201ENST00000410903 110 ntBASIC1.29□□□□□ -2.2
CDX2Q99626 RNA5SP59-201ENST00000410922 110 ntBASIC1.29□□□□□ -2.2
CDX2Q99626 AL590632.1-201ENST00000424289 371 ntBASIC1.29□□□□□ -2.2
CDX2Q99626 AC078809.1-201ENST00000427601 140 ntBASIC1.29□□□□□ -2.2
CDX2Q99626 RNU7-167P-201ENST00000459160 62 ntBASIC1.29□□□□□ -2.2
CDX2Q99626 HAR1A.1-201ENST00000459583 118 ntBASIC1.29□□□□□ -2.2
CDX2Q99626 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC1.29□□□□□ -2.2
CDX2Q99626 AC145146.1-201ENST00000496370 254 ntBASIC1.29□□□□□ -2.2
CDX2Q99626 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC1.29□□□□□ -2.2
CDX2Q99626 RPL39P5-202ENST00000512505 151 ntBASIC1.29□□□□□ -2.2
CDX2Q99626 AC025465.4-201ENST00000513422 638 ntBASIC1.29□□□□□ -2.2
CDX2Q99626 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.29□□□□□ -2.2
CDX2Q99626 RNU6-1314P-201ENST00000517139 104 ntBASIC1.29□□□□□ -2.2
CDX2Q99626 MDM2-233ENST00000545204 398 ntTSL 5 BASIC1.29□□□□□ -2.2
CDX2Q99626 AC093027.1-201ENST00000546698 429 ntBASIC1.29□□□□□ -2.2
CDX2Q99626 TRAV32-201ENST00000553993 340 ntBASIC1.29□□□□□ -2.2
CDX2Q99626 MIR3672-201ENST00000584290 82 ntBASIC1.29□□□□□ -2.2
CDX2Q99626 LARP7P1-201ENST00000605576 316 ntBASIC1.29□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 109.7 ms