Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 Y_RNA.783-201ENST00000613546 102 ntBASIC2.36□□□□□ -2.03
CTCFP49711 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC2.36□□□□□ -2.03
CTCFP49711 AL669831.3-213ENST00000636676 183 ntBASIC2.36□□□□□ -2.03
CTCFP49711 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.36□□□□□ -2.03
CTCFP49711 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
CTCFP49711 Y_RNA.2-201ENST00000362330 96 ntBASIC2.35□□□□□ -2.03
CTCFP49711 RNU6-1188P-201ENST00000363795 107 ntBASIC2.35□□□□□ -2.03
CTCFP49711 RNU6-234P-201ENST00000365229 104 ntBASIC2.35□□□□□ -2.03
CTCFP49711 RNU4-52P-201ENST00000384209 138 ntBASIC2.35□□□□□ -2.03
CTCFP49711 HMGN2P38-201ENST00000423806 265 ntBASIC2.35□□□□□ -2.03
CTCFP49711 USMG5P1-201ENST00000425964 177 ntBASIC2.35□□□□□ -2.03
CTCFP49711 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2.35□□□□□ -2.03
CTCFP49711 AC093019.1-201ENST00000443135 252 ntBASIC2.35□□□□□ -2.03
CTCFP49711 snoU13.30-201ENST00000458951 104 ntBASIC2.35□□□□□ -2.03
CTCFP49711 RNU7-95P-201ENST00000459222 64 ntBASIC2.35□□□□□ -2.03
CTCFP49711 AC007215.1-201ENST00000464893 276 ntBASIC2.35□□□□□ -2.03
CTCFP49711 ATP5EP1-201ENST00000510257 156 ntBASIC2.35□□□□□ -2.03
CTCFP49711 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC2.35□□□□□ -2.03
CTCFP49711 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC2.35□□□□□ -2.03
CTCFP49711 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC2.35□□□□□ -2.03
CTCFP49711 AC090517.1-201ENST00000569307 266 ntBASIC2.35□□□□□ -2.03
CTCFP49711 MIR4303-201ENST00000581299 66 ntBASIC2.35□□□□□ -2.03
CTCFP49711 SNRPGP17-201ENST00000603780 214 ntBASIC2.35□□□□□ -2.03
CTCFP49711 LARP7P1-201ENST00000605576 316 ntBASIC2.35□□□□□ -2.03
CTCFP49711 AL512598.1-201ENST00000610158 273 ntBASIC2.35□□□□□ -2.03
CTCFP49711 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC2.35□□□□□ -2.03
CTCFP49711 AC137590.2-201ENST00000619709 240 ntBASIC2.35□□□□□ -2.03
CTCFP49711 AC095038.3-201ENST00000634439 195 ntBASIC2.35□□□□□ -2.03
CTCFP49711 MIR1302-1-201ENST00000637932 143 ntBASIC2.35□□□□□ -2.03
CTCFP49711 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
CTCFP49711 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
CTCFP49711 AL359851.1-201ENST00000569460 4997 ntBASIC2.34□□□□□ -2.03
CTCFP49711 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
CTCFP49711 RNU1-76P-201ENST00000362903 159 ntBASIC2.34□□□□□ -2.03
CTCFP49711 RNU6-743P-201ENST00000364151 106 ntBASIC2.34□□□□□ -2.03
CTCFP49711 Y_RNA.490-201ENST00000384413 102 ntBASIC2.34□□□□□ -2.03
CTCFP49711 Y_RNA.529-201ENST00000384586 119 ntBASIC2.34□□□□□ -2.03
CTCFP49711 RNU6-331P-201ENST00000384724 107 ntBASIC2.34□□□□□ -2.03
CTCFP49711 MIR32-201ENST00000384965 70 ntBASIC2.34□□□□□ -2.03
CTCFP49711 AC004965.1-201ENST00000413033 213 ntBASIC2.34□□□□□ -2.03
CTCFP49711 PRELID3BP1-201ENST00000457142 540 ntBASIC2.34□□□□□ -2.03
CTCFP49711 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC2.34□□□□□ -2.03
CTCFP49711 AC055731.1-201ENST00000474387 401 ntBASIC2.34□□□□□ -2.03
CTCFP49711 RNU6-559P-201ENST00000516151 98 ntBASIC2.34□□□□□ -2.03
CTCFP49711 RNU6-1098P-201ENST00000516772 96 ntBASIC2.34□□□□□ -2.03
CTCFP49711 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC2.34□□□□□ -2.03
CTCFP49711 MIR5701-3-201ENST00000578890 82 ntBASIC2.34□□□□□ -2.03
CTCFP49711 MIR4287-201ENST00000579398 78 ntBASIC2.34□□□□□ -2.03
CTCFP49711 MIR5701-1-201ENST00000585138 82 ntBASIC2.34□□□□□ -2.03
CTCFP49711 RNU6ATAC35P-201ENST00000609276 444 ntBASIC2.34□□□□□ -2.03
CTCFP49711 RMST_6.1-201ENST00000611980 203 ntBASIC2.34□□□□□ -2.03
CTCFP49711 MIR5701-2-201ENST00000615634 82 ntBASIC2.34□□□□□ -2.03
CTCFP49711 PISRT1.1-201ENST00000616930 107 ntBASIC2.34□□□□□ -2.03
CTCFP49711 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC2.33□□□□□ -2.04
CTCFP49711 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC2.33□□□□□ -2.04
CTCFP49711 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
CTCFP49711 SNORA18.2-201ENST00000383865 132 ntBASIC2.33□□□□□ -2.04
CTCFP49711 MIR549A-201ENST00000385268 96 ntBASIC2.33□□□□□ -2.04
CTCFP49711 AL627390.1-201ENST00000396055 340 ntBASIC2.33□□□□□ -2.04
CTCFP49711 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC2.33□□□□□ -2.04
CTCFP49711 MTCO3P29-201ENST00000432119 779 ntBASIC2.33□□□□□ -2.04
CTCFP49711 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC2.33□□□□□ -2.04
CTCFP49711 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC2.33□□□□□ -2.04
CTCFP49711 SCARNA16.2-201ENST00000516520 172 ntBASIC2.33□□□□□ -2.04
CTCFP49711 MIR514B-201ENST00000516774 80 ntBASIC2.33□□□□□ -2.04
CTCFP49711 AL590705.4-201ENST00000532209 134 ntBASIC2.33□□□□□ -2.04
CTCFP49711 FRG2DP-202ENST00000566967 323 ntBASIC2.33□□□□□ -2.04
CTCFP49711 Y_RNA.804-201ENST00000615262 101 ntBASIC2.33□□□□□ -2.04
CTCFP49711 MIR6515-201ENST00000619843 57 ntBASIC2.33□□□□□ -2.04
CTCFP49711 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC2.33□□□□□ -2.04
CTCFP49711 SNORD115-8-201ENST00000363856 82 ntBASIC2.32□□□□□ -2.04
CTCFP49711 SNORD115-38-201ENST00000365037 82 ntBASIC2.32□□□□□ -2.04
CTCFP49711 Y_RNA.387-201ENST00000383918 102 ntBASIC2.32□□□□□ -2.04
CTCFP49711 RNU6-17P-201ENST00000384245 107 ntBASIC2.32□□□□□ -2.04
CTCFP49711 RNU6-18P-201ENST00000384527 107 ntBASIC2.32□□□□□ -2.04
CTCFP49711 RNU6-310P-201ENST00000384655 107 ntBASIC2.32□□□□□ -2.04
CTCFP49711 HMGN2P39-201ENST00000398005 273 ntBASIC2.32□□□□□ -2.04
CTCFP49711 MIR1262-201ENST00000408276 93 ntBASIC2.32□□□□□ -2.04
CTCFP49711 Y_RNA.646-201ENST00000410980 101 ntBASIC2.32□□□□□ -2.04
CTCFP49711 RNU6-1304P-201ENST00000411374 106 ntBASIC2.32□□□□□ -2.04
CTCFP49711 SRIP3-201ENST00000413200 219 ntBASIC2.32□□□□□ -2.04
CTCFP49711 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC2.32□□□□□ -2.04
CTCFP49711 AC027124.2-201ENST00000428249 105 ntBASIC2.32□□□□□ -2.04
CTCFP49711 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC2.32□□□□□ -2.04
CTCFP49711 AL035666.1-201ENST00000446195 348 ntBASIC2.32□□□□□ -2.04
CTCFP49711 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.32□□□□□ -2.04
CTCFP49711 AC093259.1-201ENST00000509755 300 ntBASIC2.32□□□□□ -2.04
CTCFP49711 AC027288.2-201ENST00000553028 243 ntBASIC2.32□□□□□ -2.04
CTCFP49711 AC104581.2-201ENST00000572227 430 ntBASIC2.32□□□□□ -2.04
CTCFP49711 AL355375.2-201ENST00000574825 175 ntBASIC2.32□□□□□ -2.04
CTCFP49711 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC2.32□□□□□ -2.04
CTCFP49711 RPL17P51-201ENST00000605218 238 ntBASIC2.32□□□□□ -2.04
CTCFP49711 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC2.32□□□□□ -2.04
CTCFP49711 AC005562.2-201ENST00000618264 111 ntBASIC2.32□□□□□ -2.04
CTCFP49711 AC112487.2-201ENST00000637950 304 ntBASIC2.32□□□□□ -2.04
CTCFP49711 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
CTCFP49711 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC2.31□□□□□ -2.04
CTCFP49711 MTND5P35-201ENST00000557537 1720 ntBASIC2.31□□□□□ -2.04
CTCFP49711 Y_RNA.356-201ENST00000365475 113 ntBASIC2.31□□□□□ -2.04
CTCFP49711 Y_RNA.405-201ENST00000383979 100 ntBASIC2.31□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 256.5 ms