Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 RNU6-457P-201ENST00000363999 107 ntBASIC1.66□□□□□ -2.14
PTPN4P29074 Y_RNA.279-201ENST00000364763 95 ntBASIC1.66□□□□□ -2.14
PTPN4P29074 AL139396.1-201ENST00000421137 167 ntBASIC1.66□□□□□ -2.14
PTPN4P29074 AL358453.1-201ENST00000422522 250 ntBASIC1.66□□□□□ -2.14
PTPN4P29074 RBMX2P4-201ENST00000441256 376 ntBASIC1.66□□□□□ -2.14
PTPN4P29074 OR2AQ1P-201ENST00000451972 200 ntBASIC1.66□□□□□ -2.14
PTPN4P29074 AC114982.1-201ENST00000469402 321 ntBASIC1.66□□□□□ -2.14
PTPN4P29074 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC1.66□□□□□ -2.14
PTPN4P29074 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC1.66□□□□□ -2.14
PTPN4P29074 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC1.66□□□□□ -2.14
PTPN4P29074 MIR4285-201ENST00000581001 85 ntBASIC1.66□□□□□ -2.14
PTPN4P29074 B3GNTL1P2-201ENST00000603673 288 ntBASIC1.66□□□□□ -2.14
PTPN4P29074 AC016727.2-201ENST00000603988 621 ntBASIC1.66□□□□□ -2.14
PTPN4P29074 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC1.66□□□□□ -2.14
PTPN4P29074 MIR6128-201ENST00000615528 109 ntBASIC1.66□□□□□ -2.14
PTPN4P29074 AC005562.2-201ENST00000618264 111 ntBASIC1.66□□□□□ -2.14
PTPN4P29074 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.66□□□□□ -2.14
PTPN4P29074 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC1.65□□□□□ -2.15
PTPN4P29074 RNU6-661P-201ENST00000362409 107 ntBASIC1.65□□□□□ -2.15
PTPN4P29074 Y_RNA.160-201ENST00000363677 92 ntBASIC1.65□□□□□ -2.15
PTPN4P29074 RNU6-596P-201ENST00000365395 98 ntBASIC1.65□□□□□ -2.15
PTPN4P29074 SNORA18.2-201ENST00000383865 132 ntBASIC1.65□□□□□ -2.15
PTPN4P29074 MT-TL1-201ENST00000386347 75 ntBASIC1.65□□□□□ -2.15
PTPN4P29074 RNU6-876P-201ENST00000391295 104 ntBASIC1.65□□□□□ -2.15
PTPN4P29074 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC1.65□□□□□ -2.15
PTPN4P29074 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC1.65□□□□□ -2.15
PTPN4P29074 MIR548K-201ENST00000408406 116 ntBASIC1.65□□□□□ -2.15
PTPN4P29074 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC1.65□□□□□ -2.15
PTPN4P29074 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC1.65□□□□□ -2.15
PTPN4P29074 AL357134.1-201ENST00000445848 426 ntBASIC1.65□□□□□ -2.15
PTPN4P29074 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC1.65□□□□□ -2.15
PTPN4P29074 TOMM22P6-201ENST00000465035 409 ntBASIC1.65□□□□□ -2.15
PTPN4P29074 AC046134.1-201ENST00000514454 666 ntBASIC1.65□□□□□ -2.15
PTPN4P29074 RNU6-1198P-201ENST00000516904 67 ntBASIC1.65□□□□□ -2.15
PTPN4P29074 RNU1-54P-201ENST00000517181 120 ntBASIC1.65□□□□□ -2.15
PTPN4P29074 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC1.65□□□□□ -2.15
PTPN4P29074 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.65□□□□□ -2.15
PTPN4P29074 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC1.65□□□□□ -2.15
PTPN4P29074 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC1.65□□□□□ -2.15
PTPN4P29074 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC1.65□□□□□ -2.15
PTPN4P29074 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC1.65□□□□□ -2.15
PTPN4P29074 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC1.65□□□□□ -2.15
PTPN4P29074 MIR4255-201ENST00000579351 72 ntBASIC1.65□□□□□ -2.15
PTPN4P29074 SNRPGP20-201ENST00000604477 205 ntBASIC1.65□□□□□ -2.15
PTPN4P29074 AC010900.2-201ENST00000604508 210 ntBASIC1.65□□□□□ -2.15
PTPN4P29074 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC1.65□□□□□ -2.15
PTPN4P29074 TCL6_2.1-201ENST00000615162 119 ntBASIC1.65□□□□□ -2.15
PTPN4P29074 AL590240.4-201ENST00000616908 390 ntBASIC1.65□□□□□ -2.15
PTPN4P29074 MTND5P9-201ENST00000503854 1755 ntBASIC1.64□□□□□ -2.15
PTPN4P29074 MIR378A-201ENST00000362177 66 ntBASIC1.64□□□□□ -2.15
PTPN4P29074 RNU6-1059P-201ENST00000363752 98 ntBASIC1.64□□□□□ -2.15
PTPN4P29074 RNU4-42P-201ENST00000364738 142 ntBASIC1.64□□□□□ -2.15
PTPN4P29074 RNU6-767P-201ENST00000384132 107 ntBASIC1.64□□□□□ -2.15
PTPN4P29074 U8.10-201ENST00000384260 133 ntBASIC1.64□□□□□ -2.15
PTPN4P29074 SNORA67.5-201ENST00000391036 107 ntBASIC1.64□□□□□ -2.15
PTPN4P29074 MIR548F5-201ENST00000408421 86 ntBASIC1.64□□□□□ -2.15
PTPN4P29074 RNU6-174P-201ENST00000410406 106 ntBASIC1.64□□□□□ -2.15
PTPN4P29074 EBAG9P1-201ENST00000418955 543 ntBASIC1.64□□□□□ -2.15
PTPN4P29074 USP9YP30-201ENST00000430729 455 ntBASIC1.64□□□□□ -2.15
PTPN4P29074 Z82188.1-201ENST00000436709 154 ntBASIC1.64□□□□□ -2.15
PTPN4P29074 SNORD5.1-201ENST00000458800 75 ntBASIC1.64□□□□□ -2.15
PTPN4P29074 RPL31P58-201ENST00000469001 379 ntBASIC1.64□□□□□ -2.15
PTPN4P29074 FO393415.2-201ENST00000480085 343 ntBASIC1.64□□□□□ -2.15
PTPN4P29074 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.64□□□□□ -2.15
PTPN4P29074 MIR5696-201ENST00000578474 85 ntBASIC1.64□□□□□ -2.15
PTPN4P29074 TEX41-243ENST00000614173 190 ntTSL 5 BASIC1.64□□□□□ -2.15
PTPN4P29074 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC1.64□□□□□ -2.15
PTPN4P29074 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
PTPN4P29074 AC245060.5-201ENST00000610778 3293 ntBASIC1.64□□□□□ -2.15
PTPN4P29074 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.63□□□□□ -2.15
PTPN4P29074 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC1.63□□□□□ -2.15
PTPN4P29074 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.63□□□□□ -2.15
PTPN4P29074 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
PTPN4P29074 RNU6-845P-201ENST00000362578 103 ntBASIC1.63□□□□□ -2.15
PTPN4P29074 RNU4-9P-201ENST00000364951 139 ntBASIC1.63□□□□□ -2.15
PTPN4P29074 RNU6-1283P-201ENST00000365314 105 ntBASIC1.63□□□□□ -2.15
PTPN4P29074 Y_RNA.339-201ENST00000365325 102 ntBASIC1.63□□□□□ -2.15
PTPN4P29074 RNU6-842P-201ENST00000384269 107 ntBASIC1.63□□□□□ -2.15
PTPN4P29074 MIR487A-201ENST00000385009 80 ntBASIC1.63□□□□□ -2.15
PTPN4P29074 MIR549A-201ENST00000385268 96 ntBASIC1.63□□□□□ -2.15
PTPN4P29074 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.63□□□□□ -2.15
PTPN4P29074 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.63□□□□□ -2.15
PTPN4P29074 SNORA12.2-201ENST00000391040 156 ntBASIC1.63□□□□□ -2.15
PTPN4P29074 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
PTPN4P29074 SNRPEP8-201ENST00000442866 260 ntBASIC1.63□□□□□ -2.15
PTPN4P29074 AC007215.1-201ENST00000464893 276 ntBASIC1.63□□□□□ -2.15
PTPN4P29074 RNU6-1053P-201ENST00000515930 101 ntBASIC1.63□□□□□ -2.15
PTPN4P29074 RNU7-30P-201ENST00000516835 62 ntBASIC1.63□□□□□ -2.15
PTPN4P29074 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC1.63□□□□□ -2.15
PTPN4P29074 MIR4753-201ENST00000585119 83 ntBASIC1.63□□□□□ -2.15
PTPN4P29074 snoU13.31-201ENST00000607291 104 ntBASIC1.63□□□□□ -2.15
PTPN4P29074 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.63□□□□□ -2.15
PTPN4P29074 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.62□□□□□ -2.15
PTPN4P29074 WWP1P1-201ENST00000466609 2769 ntBASIC1.62□□□□□ -2.15
PTPN4P29074 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
PTPN4P29074 MIR340-201ENST00000362125 95 ntBASIC1.62□□□□□ -2.15
PTPN4P29074 Y_RNA.184-201ENST00000363884 108 ntBASIC1.62□□□□□ -2.15
PTPN4P29074 SNORD115-32-201ENST00000364079 82 ntBASIC1.62□□□□□ -2.15
PTPN4P29074 RNU6-997P-201ENST00000384725 107 ntBASIC1.62□□□□□ -2.15
PTPN4P29074 RPL21P111-201ENST00000418453 477 ntBASIC1.62□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 194.9 ms