Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.78□□□□□ -1.8
MSX1P28360 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC3.78□□□□□ -1.8
MSX1P28360 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.78□□□□□ -1.8
MSX1P28360 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
MSX1P28360 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.78□□□□□ -1.81
MSX1P28360 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.77□□□□□ -1.81
MSX1P28360 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
MSX1P28360 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC3.77□□□□□ -1.81
MSX1P28360 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
MSX1P28360 RNA5SP130-201ENST00000364431 114 ntBASIC3.77□□□□□ -1.81
MSX1P28360 RNU6-1107P-201ENST00000364817 104 ntBASIC3.77□□□□□ -1.81
MSX1P28360 RNU6-1138P-201ENST00000365359 106 ntBASIC3.77□□□□□ -1.81
MSX1P28360 RPL21P65-201ENST00000406094 466 ntBASIC3.77□□□□□ -1.81
MSX1P28360 MIR1263-201ENST00000408324 86 ntBASIC3.77□□□□□ -1.81
MSX1P28360 AC016717.1-201ENST00000448918 286 ntBASIC3.77□□□□□ -1.81
MSX1P28360 RPL29P14-201ENST00000495837 428 ntBASIC3.77□□□□□ -1.81
MSX1P28360 AC025647.1-201ENST00000517879 253 ntBASIC3.77□□□□□ -1.81
MSX1P28360 IFITM8P-201ENST00000522529 394 ntBASIC3.77□□□□□ -1.81
MSX1P28360 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC3.77□□□□□ -1.81
MSX1P28360 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
MSX1P28360 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC3.77□□□□□ -1.81
MSX1P28360 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC3.77□□□□□ -1.81
MSX1P28360 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC3.77□□□□□ -1.81
MSX1P28360 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
MSX1P28360 SPATA31D2P-201ENST00000429999 4388 ntBASIC3.77□□□□□ -1.81
MSX1P28360 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.76□□□□□ -1.81
MSX1P28360 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC3.76□□□□□ -1.81
MSX1P28360 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC3.76□□□□□ -1.81
MSX1P28360 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC3.76□□□□□ -1.81
MSX1P28360 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
MSX1P28360 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC3.76□□□□□ -1.81
MSX1P28360 RNU6-1209P-201ENST00000363655 107 ntBASIC3.76□□□□□ -1.81
MSX1P28360 Y_RNA.796-201ENST00000364268 102 ntBASIC3.76□□□□□ -1.81
MSX1P28360 U8.6-201ENST00000364939 135 ntBASIC3.76□□□□□ -1.81
MSX1P28360 Y_RNA.799-201ENST00000364992 102 ntBASIC3.76□□□□□ -1.81
MSX1P28360 Y_RNA.348-201ENST00000365403 103 ntBASIC3.76□□□□□ -1.81
MSX1P28360 MIR562-201ENST00000384894 95 ntBASIC3.76□□□□□ -1.81
MSX1P28360 SNORA11.1-201ENST00000408133 129 ntBASIC3.76□□□□□ -1.81
MSX1P28360 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC3.76□□□□□ -1.81
MSX1P28360 AC006011.1-201ENST00000442758 349 ntBASIC3.76□□□□□ -1.81
MSX1P28360 OR9P1P-201ENST00000496431 281 ntBASIC3.76□□□□□ -1.81
MSX1P28360 RNU6-948P-201ENST00000516374 107 ntBASIC3.76□□□□□ -1.81
MSX1P28360 MIR2114-201ENST00000516645 80 ntBASIC3.76□□□□□ -1.81
MSX1P28360 RNU7-149P-201ENST00000516739 59 ntBASIC3.76□□□□□ -1.81
MSX1P28360 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC3.76□□□□□ -1.81
MSX1P28360 RN7SL703P-201ENST00000578485 302 ntBASIC3.76□□□□□ -1.81
MSX1P28360 AC096577.2-201ENST00000611455 153 ntBASIC3.76□□□□□ -1.81
MSX1P28360 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC3.76□□□□□ -1.81
MSX1P28360 MIR6075-201ENST00000620782 95 ntBASIC3.76□□□□□ -1.81
MSX1P28360 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
MSX1P28360 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.76□□□□□ -1.81
MSX1P28360 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.76□□□□□ -1.81
MSX1P28360 AC068647.1-201ENST00000489539 2265 ntBASIC3.75□□□□□ -1.81
MSX1P28360 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.75□□□□□ -1.81
MSX1P28360 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
MSX1P28360 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.75□□□□□ -1.81
MSX1P28360 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC3.75□□□□□ -1.81
MSX1P28360 AC058791.1-201ENST00000608412 3198 ntBASIC3.75□□□□□ -1.81
MSX1P28360 RNU6-766P-201ENST00000362478 107 ntBASIC3.75□□□□□ -1.81
MSX1P28360 RNA5SP125-201ENST00000364843 120 ntBASIC3.75□□□□□ -1.81
MSX1P28360 SNORA70.4-201ENST00000365509 134 ntBASIC3.75□□□□□ -1.81
MSX1P28360 Y_RNA.528-201ENST00000384575 108 ntBASIC3.75□□□□□ -1.81
MSX1P28360 SNORA12.1-201ENST00000390873 148 ntBASIC3.75□□□□□ -1.81
MSX1P28360 SNORD72-201ENST00000390994 80 ntBASIC3.75□□□□□ -1.81
MSX1P28360 RNA5SP354-201ENST00000391247 136 ntBASIC3.75□□□□□ -1.81
MSX1P28360 PTMAP2-201ENST00000397627 327 ntBASIC3.75□□□□□ -1.81
MSX1P28360 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.75□□□□□ -1.81
MSX1P28360 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC3.75□□□□□ -1.81
MSX1P28360 AC017083.1-201ENST00000428093 483 ntBASIC3.75□□□□□ -1.81
MSX1P28360 RPL30P4-201ENST00000429309 333 ntBASIC3.75□□□□□ -1.81
MSX1P28360 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC3.75□□□□□ -1.81
MSX1P28360 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC3.75□□□□□ -1.81
MSX1P28360 RPS27P22-201ENST00000478056 241 ntBASIC3.75□□□□□ -1.81
MSX1P28360 AC109329.2-201ENST00000519658 482 ntBASIC3.75□□□□□ -1.81
MSX1P28360 AC007751.1-201ENST00000529260 376 ntBASIC3.75□□□□□ -1.81
MSX1P28360 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3.75□□□□□ -1.81
MSX1P28360 AC007012.1-201ENST00000567192 175 ntBASIC3.75□□□□□ -1.81
MSX1P28360 AC020914.4-201ENST00000597690 277 ntBASIC3.75□□□□□ -1.81
MSX1P28360 AC090517.3-201ENST00000625170 141 ntBASIC3.75□□□□□ -1.81
MSX1P28360 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC3.75□□□□□ -1.81
MSX1P28360 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC3.75□□□□□ -1.81
MSX1P28360 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
MSX1P28360 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
MSX1P28360 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
MSX1P28360 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC3.75□□□□□ -1.81
MSX1P28360 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC3.75□□□□□ -1.81
MSX1P28360 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
MSX1P28360 AC009487.4-201ENST00000624969 3585 ntBASIC3.74□□□□□ -1.81
MSX1P28360 Y_RNA.66-201ENST00000362862 102 ntBASIC3.74□□□□□ -1.81
MSX1P28360 Y_RNA.85-201ENST00000363014 111 ntBASIC3.74□□□□□ -1.81
MSX1P28360 RNA5SP387-201ENST00000364226 106 ntBASIC3.74□□□□□ -1.81
MSX1P28360 SNORD31B-201ENST00000364977 69 ntBASIC3.74□□□□□ -1.81
MSX1P28360 RNU6-234P-201ENST00000365229 104 ntBASIC3.74□□□□□ -1.81
MSX1P28360 SNORD6-201ENST00000365444 73 ntBASIC3.74□□□□□ -1.81
MSX1P28360 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC3.74□□□□□ -1.81
MSX1P28360 Y_RNA.486-201ENST00000384398 107 ntBASIC3.74□□□□□ -1.81
MSX1P28360 RNU6ATAC-201ENST00000408749 126 ntBASIC3.74□□□□□ -1.81
MSX1P28360 AC008134.1-201ENST00000420943 193 ntBASIC3.74□□□□□ -1.81
MSX1P28360 RPS4XP11-201ENST00000446897 772 ntBASIC3.74□□□□□ -1.81
MSX1P28360 AC006445.1-201ENST00000491925 405 ntBASIC3.74□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 164 ms