Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.93□□□□□ -1.94
LIMCH1Q9UPQ0 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.93□□□□□ -1.94
LIMCH1Q9UPQ0 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
LIMCH1Q9UPQ0 RNU6-461P-201ENST00000364195 107 ntBASIC2.93□□□□□ -1.94
LIMCH1Q9UPQ0 MIR1294-201ENST00000408503 142 ntBASIC2.93□□□□□ -1.94
LIMCH1Q9UPQ0 RNU2-52P-201ENST00000410680 190 ntBASIC2.93□□□□□ -1.94
LIMCH1Q9UPQ0 RNU6-1001P-201ENST00000411265 100 ntBASIC2.93□□□□□ -1.94
LIMCH1Q9UPQ0 AC027124.2-201ENST00000428249 105 ntBASIC2.93□□□□□ -1.94
LIMCH1Q9UPQ0 SNORA59A-201ENST00000459326 152 ntBASIC2.93□□□□□ -1.94
LIMCH1Q9UPQ0 CKS1BP2-201ENST00000497342 240 ntBASIC2.93□□□□□ -1.94
LIMCH1Q9UPQ0 AC074133.1-201ENST00000515696 183 ntBASIC2.93□□□□□ -1.94
LIMCH1Q9UPQ0 RNU6-344P-201ENST00000516635 111 ntBASIC2.93□□□□□ -1.94
LIMCH1Q9UPQ0 AC018630.3-201ENST00000542637 96 ntBASIC2.93□□□□□ -1.94
LIMCH1Q9UPQ0 GTF3AP2-201ENST00000557014 266 ntBASIC2.93□□□□□ -1.94
LIMCH1Q9UPQ0 RAC1P9-201ENST00000604990 392 ntBASIC2.93□□□□□ -1.94
LIMCH1Q9UPQ0 AL033523.1-201ENST00000605153 153 ntBASIC2.93□□□□□ -1.94
LIMCH1Q9UPQ0 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.93□□□□□ -1.94
LIMCH1Q9UPQ0 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.93□□□□□ -1.94
LIMCH1Q9UPQ0 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.93□□□□□ -1.94
LIMCH1Q9UPQ0 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
LIMCH1Q9UPQ0 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.93□□□□□ -1.94
LIMCH1Q9UPQ0 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.93□□□□□ -1.94
LIMCH1Q9UPQ0 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.92□□□□□ -1.94
LIMCH1Q9UPQ0 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC2.92□□□□□ -1.94
LIMCH1Q9UPQ0 RNA5SP361-201ENST00000362686 118 ntBASIC2.92□□□□□ -1.94
LIMCH1Q9UPQ0 Y_RNA.47-201ENST00000362697 108 ntBASIC2.92□□□□□ -1.94
LIMCH1Q9UPQ0 Y_RNA.111-201ENST00000363248 100 ntBASIC2.92□□□□□ -1.94
LIMCH1Q9UPQ0 RNU6-26P-201ENST00000383985 107 ntBASIC2.92□□□□□ -1.94
LIMCH1Q9UPQ0 RNU6-196P-201ENST00000384315 107 ntBASIC2.92□□□□□ -1.94
LIMCH1Q9UPQ0 RNU6-1274P-201ENST00000384557 107 ntBASIC2.92□□□□□ -1.94
LIMCH1Q9UPQ0 MIR27B-201ENST00000385129 97 ntBASIC2.92□□□□□ -1.94
LIMCH1Q9UPQ0 NDUFB4P4-201ENST00000404822 243 ntBASIC2.92□□□□□ -1.94
LIMCH1Q9UPQ0 RNU2-63P-201ENST00000410792 194 ntBASIC2.92□□□□□ -1.94
LIMCH1Q9UPQ0 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC2.92□□□□□ -1.94
LIMCH1Q9UPQ0 COTL1P1-201ENST00000422309 375 ntBASIC2.92□□□□□ -1.94
LIMCH1Q9UPQ0 AL161788.1-201ENST00000441805 169 ntBASIC2.92□□□□□ -1.94
LIMCH1Q9UPQ0 AC004386.2-201ENST00000441858 148 ntBASIC2.92□□□□□ -1.94
LIMCH1Q9UPQ0 AL731563.1-201ENST00000442202 214 ntBASIC2.92□□□□□ -1.94
LIMCH1Q9UPQ0 AC009237.7-201ENST00000447357 229 ntBASIC2.92□□□□□ -1.94
LIMCH1Q9UPQ0 PCNPP5-201ENST00000452246 481 ntBASIC2.92□□□□□ -1.94
LIMCH1Q9UPQ0 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.92□□□□□ -1.94
LIMCH1Q9UPQ0 APOA2-205ENST00000468465 421 ntTSL 2 BASIC2.92□□□□□ -1.94
LIMCH1Q9UPQ0 RNU2-44P-201ENST00000516795 194 ntBASIC2.92□□□□□ -1.94
LIMCH1Q9UPQ0 RNU6-897P-201ENST00000517135 105 ntBASIC2.92□□□□□ -1.94
LIMCH1Q9UPQ0 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC2.92□□□□□ -1.94
LIMCH1Q9UPQ0 AC007336.1-201ENST00000576365 3828 ntBASIC2.92□□□□□ -1.94
LIMCH1Q9UPQ0 AL356280.1-201ENST00000603614 379 ntBASIC2.92□□□□□ -1.94
LIMCH1Q9UPQ0 CENPF-206ENST00000614578 528 ntTSL 5 BASIC2.92□□□□□ -1.94
LIMCH1Q9UPQ0 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.92□□□□□ -1.94
LIMCH1Q9UPQ0 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.92□□□□□ -1.94
LIMCH1Q9UPQ0 7SK.10-201ENST00000621414 298 ntBASIC2.92□□□□□ -1.94
LIMCH1Q9UPQ0 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
LIMCH1Q9UPQ0 MTND5P35-201ENST00000557537 1720 ntBASIC2.92□□□□□ -1.94
LIMCH1Q9UPQ0 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
LIMCH1Q9UPQ0 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
LIMCH1Q9UPQ0 AC080100.1-201ENST00000624239 5356 ntBASIC2.92□□□□□ -1.94
LIMCH1Q9UPQ0 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.91□□□□□ -1.94
LIMCH1Q9UPQ0 RNU6-770P-201ENST00000363929 105 ntBASIC2.91□□□□□ -1.94
LIMCH1Q9UPQ0 Y_RNA.214-201ENST00000364201 112 ntBASIC2.91□□□□□ -1.94
LIMCH1Q9UPQ0 Y_RNA.556-201ENST00000384677 113 ntBASIC2.91□□□□□ -1.94
LIMCH1Q9UPQ0 MIR627-201ENST00000384979 97 ntBASIC2.91□□□□□ -1.94
LIMCH1Q9UPQ0 MIR95-201ENST00000385072 81 ntBASIC2.91□□□□□ -1.94
LIMCH1Q9UPQ0 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
LIMCH1Q9UPQ0 RPL21P1-201ENST00000399532 476 ntBASIC2.91□□□□□ -1.94
LIMCH1Q9UPQ0 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC2.91□□□□□ -1.94
LIMCH1Q9UPQ0 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC2.91□□□□□ -1.94
LIMCH1Q9UPQ0 AL445305.1-201ENST00000432577 575 ntBASIC2.91□□□□□ -1.94
LIMCH1Q9UPQ0 AC025750.2-201ENST00000442609 450 ntBASIC2.91□□□□□ -1.94
LIMCH1Q9UPQ0 AC010095.1-201ENST00000443543 144 ntBASIC2.91□□□□□ -1.94
LIMCH1Q9UPQ0 KRTAP13-6P-201ENST00000508999 371 ntBASIC2.91□□□□□ -1.94
LIMCH1Q9UPQ0 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.91□□□□□ -1.94
LIMCH1Q9UPQ0 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC2.91□□□□□ -1.94
LIMCH1Q9UPQ0 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC2.91□□□□□ -1.94
LIMCH1Q9UPQ0 MIR5006-201ENST00000583027 110 ntBASIC2.91□□□□□ -1.94
LIMCH1Q9UPQ0 SNORA18.2-201ENST00000383865 132 ntBASIC2.9□□□□□ -1.95
LIMCH1Q9UPQ0 SNORA12-201ENST00000391162 147 ntBASIC2.9□□□□□ -1.95
LIMCH1Q9UPQ0 ARL5AP4-201ENST00000430731 512 ntBASIC2.9□□□□□ -1.95
LIMCH1Q9UPQ0 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.9□□□□□ -1.95
LIMCH1Q9UPQ0 IPO7P1-201ENST00000442031 636 ntBASIC2.9□□□□□ -1.95
LIMCH1Q9UPQ0 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.9□□□□□ -1.95
LIMCH1Q9UPQ0 RPS23P5-201ENST00000495419 428 ntBASIC2.9□□□□□ -1.95
LIMCH1Q9UPQ0 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC2.9□□□□□ -1.95
LIMCH1Q9UPQ0 AC233702.2-202ENST00000562547 291 ntBASIC2.9□□□□□ -1.95
LIMCH1Q9UPQ0 MIR3671-201ENST00000580455 88 ntBASIC2.9□□□□□ -1.95
LIMCH1Q9UPQ0 MIR3117-201ENST00000584034 78 ntBASIC2.9□□□□□ -1.95
LIMCH1Q9UPQ0 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC2.9□□□□□ -1.95
LIMCH1Q9UPQ0 AC130454.1-201ENST00000622948 401 ntBASIC2.9□□□□□ -1.95
LIMCH1Q9UPQ0 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC2.9□□□□□ -1.95
LIMCH1Q9UPQ0 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
LIMCH1Q9UPQ0 RNU6-713P-201ENST00000384761 107 ntBASIC2.89□□□□□ -1.95
LIMCH1Q9UPQ0 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
LIMCH1Q9UPQ0 ELOCP20-201ENST00000422460 345 ntBASIC2.89□□□□□ -1.95
LIMCH1Q9UPQ0 AC063976.3-201ENST00000426849 329 ntBASIC2.89□□□□□ -1.95
LIMCH1Q9UPQ0 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC2.89□□□□□ -1.95
LIMCH1Q9UPQ0 AC090515.1-201ENST00000465295 476 ntBASIC2.89□□□□□ -1.95
LIMCH1Q9UPQ0 AC091179.3-201ENST00000474761 144 ntBASIC2.89□□□□□ -1.95
LIMCH1Q9UPQ0 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.89□□□□□ -1.95
LIMCH1Q9UPQ0 SNORA40.9-201ENST00000515895 93 ntBASIC2.89□□□□□ -1.95
LIMCH1Q9UPQ0 RNU6-397P-201ENST00000516226 104 ntBASIC2.89□□□□□ -1.95
LIMCH1Q9UPQ0 RNA5SP320-201ENST00000516263 124 ntBASIC2.89□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 111.6 ms