Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 PRELID3BP1-201ENST00000457142 540 ntBASIC2.35□□□□□ -2.03
USP44Q9H0E7 RPL30P10-201ENST00000488148 337 ntBASIC2.35□□□□□ -2.03
USP44Q9H0E7 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC2.35□□□□□ -2.03
USP44Q9H0E7 AC097473.1-201ENST00000508142 408 ntBASIC2.35□□□□□ -2.03
USP44Q9H0E7 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC2.35□□□□□ -2.03
USP44Q9H0E7 AC090517.1-201ENST00000569307 266 ntBASIC2.35□□□□□ -2.03
USP44Q9H0E7 AC104581.2-201ENST00000572227 430 ntBASIC2.35□□□□□ -2.03
USP44Q9H0E7 AC005014.2-201ENST00000607795 599 ntBASIC2.35□□□□□ -2.03
USP44Q9H0E7 MIR6845-201ENST00000613182 61 ntBASIC2.35□□□□□ -2.03
USP44Q9H0E7 TEX41-243ENST00000614173 190 ntTSL 5 BASIC2.35□□□□□ -2.03
USP44Q9H0E7 TCL6_2.1-201ENST00000615162 119 ntBASIC2.35□□□□□ -2.03
USP44Q9H0E7 AC084781.2-201ENST00000615568 161 ntBASIC2.35□□□□□ -2.03
USP44Q9H0E7 BX322639.1-202ENST00000423987 2213 ntBASIC2.35□□□□□ -2.03
USP44Q9H0E7 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.35□□□□□ -2.03
USP44Q9H0E7 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
USP44Q9H0E7 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.35□□□□□ -2.03
USP44Q9H0E7 RNU6-797P-201ENST00000363101 109 ntBASIC2.34□□□□□ -2.03
USP44Q9H0E7 MIR9-3-201ENST00000385084 90 ntBASIC2.34□□□□□ -2.03
USP44Q9H0E7 MIR300-201ENST00000401138 83 ntBASIC2.34□□□□□ -2.03
USP44Q9H0E7 CYCSP49-201ENST00000420810 319 ntBASIC2.34□□□□□ -2.03
USP44Q9H0E7 IFNA11P-201ENST00000446352 526 ntBASIC2.34□□□□□ -2.03
USP44Q9H0E7 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.34□□□□□ -2.03
USP44Q9H0E7 Y_RNA.653-201ENST00000459091 95 ntBASIC2.34□□□□□ -2.03
USP44Q9H0E7 RNU6-120P-201ENST00000516077 103 ntBASIC2.34□□□□□ -2.03
USP44Q9H0E7 IGLV3-17-201ENST00000519099 244 ntBASIC2.34□□□□□ -2.03
USP44Q9H0E7 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC2.34□□□□□ -2.03
USP44Q9H0E7 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC2.34□□□□□ -2.03
USP44Q9H0E7 AL590705.4-201ENST00000532209 134 ntBASIC2.34□□□□□ -2.03
USP44Q9H0E7 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.34□□□□□ -2.03
USP44Q9H0E7 MIR4529-201ENST00000578110 78 ntBASIC2.34□□□□□ -2.03
USP44Q9H0E7 MIR5694-201ENST00000581190 76 ntBASIC2.34□□□□□ -2.03
USP44Q9H0E7 AL031274.2-201ENST00000599419 203 ntBASIC2.34□□□□□ -2.03
USP44Q9H0E7 AC005562.2-201ENST00000618264 111 ntBASIC2.34□□□□□ -2.03
USP44Q9H0E7 MIR1248-201ENST00000629190 106 ntBASIC2.34□□□□□ -2.03
USP44Q9H0E7 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC2.34□□□□□ -2.03
USP44Q9H0E7 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.33□□□□□ -2.04
USP44Q9H0E7 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
USP44Q9H0E7 SNORD31B-201ENST00000364977 69 ntBASIC2.33□□□□□ -2.04
USP44Q9H0E7 SNORA12-201ENST00000391162 147 ntBASIC2.33□□□□□ -2.04
USP44Q9H0E7 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC2.33□□□□□ -2.04
USP44Q9H0E7 AF228730.4-201ENST00000421457 183 ntBASIC2.33□□□□□ -2.04
USP44Q9H0E7 MTND3P23-201ENST00000431980 347 ntBASIC2.33□□□□□ -2.04
USP44Q9H0E7 AC007677.1-201ENST00000445757 515 ntBASIC2.33□□□□□ -2.04
USP44Q9H0E7 ELOCP24-201ENST00000456370 334 ntBASIC2.33□□□□□ -2.04
USP44Q9H0E7 AC093259.1-201ENST00000509755 300 ntBASIC2.33□□□□□ -2.04
USP44Q9H0E7 RNU5F-4P-201ENST00000516581 114 ntBASIC2.33□□□□□ -2.04
USP44Q9H0E7 RNU6-965P-201ENST00000516721 96 ntBASIC2.33□□□□□ -2.04
USP44Q9H0E7 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC2.33□□□□□ -2.04
USP44Q9H0E7 AL359314.1-201ENST00000616913 261 ntBASIC2.33□□□□□ -2.04
USP44Q9H0E7 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.33□□□□□ -2.04
USP44Q9H0E7 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
USP44Q9H0E7 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.32□□□□□ -2.04
USP44Q9H0E7 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
USP44Q9H0E7 SNORA3A-201ENST00000364113 130 ntBASIC2.32□□□□□ -2.04
USP44Q9H0E7 RNU6-890P-201ENST00000384121 107 ntBASIC2.32□□□□□ -2.04
USP44Q9H0E7 SNORD14D-201ENST00000384390 87 ntBASIC2.32□□□□□ -2.04
USP44Q9H0E7 MIR764-201ENST00000390811 85 ntBASIC2.32□□□□□ -2.04
USP44Q9H0E7 SNORA75.6-201ENST00000391318 127 ntBASIC2.32□□□□□ -2.04
USP44Q9H0E7 MTCO2P27-201ENST00000420740 428 ntBASIC2.32□□□□□ -2.04
USP44Q9H0E7 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC2.32□□□□□ -2.04
USP44Q9H0E7 AL353997.1-201ENST00000432936 108 ntBASIC2.32□□□□□ -2.04
USP44Q9H0E7 RNU7-152P-201ENST00000458982 64 ntBASIC2.32□□□□□ -2.04
USP44Q9H0E7 AC079804.2-201ENST00000490376 200 ntBASIC2.32□□□□□ -2.04
USP44Q9H0E7 AC107393.1-201ENST00000512403 346 ntBASIC2.32□□□□□ -2.04
USP44Q9H0E7 RNA5SP490-201ENST00000517141 136 ntBASIC2.32□□□□□ -2.04
USP44Q9H0E7 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC2.32□□□□□ -2.04
USP44Q9H0E7 MIR5701-3-201ENST00000578890 82 ntBASIC2.32□□□□□ -2.04
USP44Q9H0E7 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC2.32□□□□□ -2.04
USP44Q9H0E7 MIR5701-1-201ENST00000585138 82 ntBASIC2.32□□□□□ -2.04
USP44Q9H0E7 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC2.32□□□□□ -2.04
USP44Q9H0E7 MIR5701-2-201ENST00000615634 82 ntBASIC2.32□□□□□ -2.04
USP44Q9H0E7 MIR7843-201ENST00000622274 79 ntBASIC2.32□□□□□ -2.04
USP44Q9H0E7 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.32□□□□□ -2.04
USP44Q9H0E7 RNY1P16-201ENST00000363063 111 ntBASIC2.31□□□□□ -2.04
USP44Q9H0E7 RNU6-280P-201ENST00000364145 104 ntBASIC2.31□□□□□ -2.04
USP44Q9H0E7 Y_RNA.332-201ENST00000365271 113 ntBASIC2.31□□□□□ -2.04
USP44Q9H0E7 RNU6-438P-201ENST00000365561 103 ntBASIC2.31□□□□□ -2.04
USP44Q9H0E7 RNU6-17P-201ENST00000384245 107 ntBASIC2.31□□□□□ -2.04
USP44Q9H0E7 U8.10-201ENST00000384260 133 ntBASIC2.31□□□□□ -2.04
USP44Q9H0E7 RNU6-18P-201ENST00000384527 107 ntBASIC2.31□□□□□ -2.04
USP44Q9H0E7 MIR487A-201ENST00000385009 80 ntBASIC2.31□□□□□ -2.04
USP44Q9H0E7 SNORA26.9-201ENST00000391322 122 ntBASIC2.31□□□□□ -2.04
USP44Q9H0E7 HMGN2P39-201ENST00000398005 273 ntBASIC2.31□□□□□ -2.04
USP44Q9H0E7 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC2.31□□□□□ -2.04
USP44Q9H0E7 AL445685.2-201ENST00000422551 342 ntBASIC2.31□□□□□ -2.04
USP44Q9H0E7 MTCO3P29-201ENST00000432119 779 ntBASIC2.31□□□□□ -2.04
USP44Q9H0E7 AC236972.2-201ENST00000434979 310 ntBASIC2.31□□□□□ -2.04
USP44Q9H0E7 HMGN2P18-201ENST00000450680 270 ntBASIC2.31□□□□□ -2.04
USP44Q9H0E7 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.31□□□□□ -2.04
USP44Q9H0E7 AC107032.1-201ENST00000485945 480 ntBASIC2.31□□□□□ -2.04
USP44Q9H0E7 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC2.31□□□□□ -2.04
USP44Q9H0E7 RNU6-295P-201ENST00000516901 104 ntBASIC2.31□□□□□ -2.04
USP44Q9H0E7 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC2.31□□□□□ -2.04
USP44Q9H0E7 AC087441.2-201ENST00000529141 262 ntBASIC2.31□□□□□ -2.04
USP44Q9H0E7 AC233702.2-202ENST00000562547 291 ntBASIC2.31□□□□□ -2.04
USP44Q9H0E7 AC100812.1-201ENST00000607622 580 ntBASIC2.31□□□□□ -2.04
USP44Q9H0E7 AC126177.8-201ENST00000618339 1015 ntBASIC2.31□□□□□ -2.04
USP44Q9H0E7 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC2.31□□□□□ -2.04
USP44Q9H0E7 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.31□□□□□ -2.04
USP44Q9H0E7 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms