Protein–RNA interactions for Protein: Q96PN7

TRERF1, Transcriptional-regulating factor 1, humanhuman

Predictions only

Length 1,200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRERF1Q96PN7 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC4.2□□□□□ -1.74
TRERF1Q96PN7 MIR378D2-201ENST00000580636 98 ntBASIC4.2□□□□□ -1.74
TRERF1Q96PN7 AC090897.2-201ENST00000581715 130 ntBASIC4.2□□□□□ -1.74
TRERF1Q96PN7 AL451007.1-201ENST00000595491 289 ntBASIC4.2□□□□□ -1.74
TRERF1Q96PN7 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC4.2□□□□□ -1.74
TRERF1Q96PN7 AL162713.1-201ENST00000604480 262 ntBASIC4.2□□□□□ -1.74
TRERF1Q96PN7 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC4.2□□□□□ -1.74
TRERF1Q96PN7 MIR7975-201ENST00000619350 68 ntBASIC4.2□□□□□ -1.74
TRERF1Q96PN7 AC244205.2-202ENST00000635781 342 ntBASIC4.2□□□□□ -1.74
TRERF1Q96PN7 U6.115-201ENST00000636045 103 ntBASIC4.2□□□□□ -1.74
TRERF1Q96PN7 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
TRERF1Q96PN7 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.19□□□□□ -1.74
TRERF1Q96PN7 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
TRERF1Q96PN7 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
TRERF1Q96PN7 RNU6-50P-201ENST00000362356 103 ntBASIC4.19□□□□□ -1.74
TRERF1Q96PN7 RNA5SP189-201ENST00000364920 115 ntBASIC4.19□□□□□ -1.74
TRERF1Q96PN7 RNU6-1280P-201ENST00000365211 107 ntBASIC4.19□□□□□ -1.74
TRERF1Q96PN7 RNU6-622P-201ENST00000384272 103 ntBASIC4.19□□□□□ -1.74
TRERF1Q96PN7 RNU6-880P-201ENST00000384526 107 ntBASIC4.19□□□□□ -1.74
TRERF1Q96PN7 MIR23A-201ENST00000385245 73 ntBASIC4.19□□□□□ -1.74
TRERF1Q96PN7 CYCSP4-201ENST00000429682 331 ntBASIC4.19□□□□□ -1.74
TRERF1Q96PN7 RPL37P4-201ENST00000448908 268 ntBASIC4.19□□□□□ -1.74
TRERF1Q96PN7 RNU1-117P-201ENST00000517041 158 ntBASIC4.19□□□□□ -1.74
TRERF1Q96PN7 RNU6-762P-201ENST00000517107 102 ntBASIC4.19□□□□□ -1.74
TRERF1Q96PN7 AC093331.1-201ENST00000521474 169 ntBASIC4.19□□□□□ -1.74
TRERF1Q96PN7 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC4.19□□□□□ -1.74
TRERF1Q96PN7 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC4.19□□□□□ -1.74
TRERF1Q96PN7 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC4.19□□□□□ -1.74
TRERF1Q96PN7 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC4.19□□□□□ -1.74
TRERF1Q96PN7 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
TRERF1Q96PN7 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.74
TRERF1Q96PN7 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC4.18□□□□□ -1.74
TRERF1Q96PN7 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.74
TRERF1Q96PN7 RNA5SP72-201ENST00000364442 117 ntBASIC4.18□□□□□ -1.74
TRERF1Q96PN7 Y_RNA.361-201ENST00000365515 120 ntBASIC4.18□□□□□ -1.74
TRERF1Q96PN7 RNU6-144P-201ENST00000383951 107 ntBASIC4.18□□□□□ -1.74
TRERF1Q96PN7 RNU6-19P-201ENST00000384718 107 ntBASIC4.18□□□□□ -1.74
TRERF1Q96PN7 SNORA12.1-201ENST00000390873 148 ntBASIC4.18□□□□□ -1.74
TRERF1Q96PN7 SNORA26.2-201ENST00000390922 122 ntBASIC4.18□□□□□ -1.74
TRERF1Q96PN7 CBX3P9-201ENST00000402326 552 ntBASIC4.18□□□□□ -1.74
TRERF1Q96PN7 MIR320B2-201ENST00000408479 138 ntBASIC4.18□□□□□ -1.74
TRERF1Q96PN7 MIR1278-201ENST00000408753 81 ntBASIC4.18□□□□□ -1.74
TRERF1Q96PN7 Y_RNA.617-201ENST00000410920 90 ntBASIC4.18□□□□□ -1.74
TRERF1Q96PN7 AC245047.4-201ENST00000433189 144 ntBASIC4.18□□□□□ -1.74
TRERF1Q96PN7 AC117454.1-201ENST00000491120 168 ntBASIC4.18□□□□□ -1.74
TRERF1Q96PN7 SNORA70.14-201ENST00000516205 110 ntBASIC4.18□□□□□ -1.74
TRERF1Q96PN7 AC096577.2-201ENST00000611455 153 ntBASIC4.18□□□□□ -1.74
TRERF1Q96PN7 AC106754.2-201ENST00000623006 233 ntBASIC4.18□□□□□ -1.74
TRERF1Q96PN7 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC4.18□□□□□ -1.74
TRERF1Q96PN7 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
TRERF1Q96PN7 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
TRERF1Q96PN7 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC4.17□□□□□ -1.74
TRERF1Q96PN7 Y_RNA.120-201ENST00000363304 110 ntBASIC4.17□□□□□ -1.74
TRERF1Q96PN7 RNU6-640P-201ENST00000363693 105 ntBASIC4.17□□□□□ -1.74
TRERF1Q96PN7 RNU6-294P-201ENST00000364999 102 ntBASIC4.17□□□□□ -1.74
TRERF1Q96PN7 RNU6-106P-201ENST00000384405 107 ntBASIC4.17□□□□□ -1.74
TRERF1Q96PN7 MIR490-201ENST00000384865 128 ntBASIC4.17□□□□□ -1.74
TRERF1Q96PN7 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC4.17□□□□□ -1.74
TRERF1Q96PN7 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC4.17□□□□□ -1.74
TRERF1Q96PN7 RN7SL330P-201ENST00000469709 307 ntBASIC4.17□□□□□ -1.74
TRERF1Q96PN7 RPS26P45-201ENST00000471748 340 ntBASIC4.17□□□□□ -1.74
TRERF1Q96PN7 SNORA70.18-201ENST00000516696 98 ntBASIC4.17□□□□□ -1.74
TRERF1Q96PN7 NDUFB9P3-201ENST00000521269 501 ntBASIC4.17□□□□□ -1.74
TRERF1Q96PN7 RPL30P11-203ENST00000598995 310 ntBASIC4.17□□□□□ -1.74
TRERF1Q96PN7 AL161756.2-201ENST00000604597 246 ntBASIC4.17□□□□□ -1.74
TRERF1Q96PN7 AC025754.2-201ENST00000606491 432 ntBASIC4.17□□□□□ -1.74
TRERF1Q96PN7 Xist_exon1.1-201ENST00000618930 85 ntBASIC4.17□□□□□ -1.74
TRERF1Q96PN7 AC018692.3-201ENST00000623929 123 ntBASIC4.17□□□□□ -1.74
TRERF1Q96PN7 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
TRERF1Q96PN7 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC4.17□□□□□ -1.74
TRERF1Q96PN7 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
TRERF1Q96PN7 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC4.16□□□□□ -1.74
TRERF1Q96PN7 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
TRERF1Q96PN7 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
TRERF1Q96PN7 RNU6-978P-201ENST00000364371 103 ntBASIC4.16□□□□□ -1.74
TRERF1Q96PN7 RNVU1-14-201ENST00000384770 164 ntBASIC4.16□□□□□ -1.74
TRERF1Q96PN7 EI24P2-201ENST00000397776 1076 ntBASIC4.16□□□□□ -1.74
TRERF1Q96PN7 RNU6-554P-201ENST00000410466 106 ntBASIC4.16□□□□□ -1.74
TRERF1Q96PN7 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC4.16□□□□□ -1.74
TRERF1Q96PN7 Y_RNA.649-201ENST00000459077 103 ntBASIC4.16□□□□□ -1.74
TRERF1Q96PN7 RPS27AP10-201ENST00000496103 208 ntBASIC4.16□□□□□ -1.74
TRERF1Q96PN7 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC4.16□□□□□ -1.74
TRERF1Q96PN7 RNU2-58P-201ENST00000516403 183 ntBASIC4.16□□□□□ -1.74
TRERF1Q96PN7 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC4.16□□□□□ -1.74
TRERF1Q96PN7 SNORD11B-201ENST00000607707 90 ntBASIC4.16□□□□□ -1.74
TRERF1Q96PN7 AC068205.3-201ENST00000636385 468 ntBASIC4.16□□□□□ -1.74
TRERF1Q96PN7 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC4.16□□□□□ -1.74
TRERF1Q96PN7 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC4.16□□□□□ -1.74
TRERF1Q96PN7 AL596211.1-201ENST00000569873 2277 ntBASIC4.16□□□□□ -1.74
TRERF1Q96PN7 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
TRERF1Q96PN7 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC4.16□□□□□ -1.74
TRERF1Q96PN7 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
TRERF1Q96PN7 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
TRERF1Q96PN7 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC4.15□□□□□ -1.74
TRERF1Q96PN7 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC4.15□□□□□ -1.75
TRERF1Q96PN7 SNORA31-201ENST00000362607 130 ntBASIC4.15□□□□□ -1.75
TRERF1Q96PN7 SNORD114-19-201ENST00000363072 75 ntBASIC4.15□□□□□ -1.75
TRERF1Q96PN7 Y_RNA.348-201ENST00000365403 103 ntBASIC4.15□□□□□ -1.75
TRERF1Q96PN7 RNY3P5-201ENST00000384127 102 ntBASIC4.15□□□□□ -1.75
TRERF1Q96PN7 PTMAP5-201ENST00000393073 333 ntBASIC4.15□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 114.3 ms