Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 BX322639.1-202ENST00000423987 2213 ntBASIC3.15□□□□□ -1.9
CLIP3Q96DZ5 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.15□□□□□ -1.91
CLIP3Q96DZ5 RNU6-20P-201ENST00000384106 107 ntBASIC3.15□□□□□ -1.91
CLIP3Q96DZ5 MIR487A-201ENST00000385009 80 ntBASIC3.15□□□□□ -1.91
CLIP3Q96DZ5 UBA52P6-201ENST00000399822 382 ntBASIC3.15□□□□□ -1.91
CLIP3Q96DZ5 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.91
CLIP3Q96DZ5 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC3.15□□□□□ -1.91
CLIP3Q96DZ5 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC3.15□□□□□ -1.91
CLIP3Q96DZ5 AC090525.1-201ENST00000479116 478 ntBASIC3.15□□□□□ -1.91
CLIP3Q96DZ5 RNU6-1219P-201ENST00000516143 112 ntBASIC3.15□□□□□ -1.91
CLIP3Q96DZ5 RNU7-110P-201ENST00000516891 62 ntBASIC3.15□□□□□ -1.91
CLIP3Q96DZ5 RNU6-56P-201ENST00000516986 93 ntBASIC3.15□□□□□ -1.91
CLIP3Q96DZ5 RPL21P9-201ENST00000556149 474 ntBASIC3.15□□□□□ -1.91
CLIP3Q96DZ5 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC3.15□□□□□ -1.91
CLIP3Q96DZ5 AL034555.1-201ENST00000604816 211 ntBASIC3.15□□□□□ -1.91
CLIP3Q96DZ5 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC3.15□□□□□ -1.91
CLIP3Q96DZ5 AC104465.1-201ENST00000611365 139 ntBASIC3.15□□□□□ -1.91
CLIP3Q96DZ5 MIR8057-201ENST00000620957 69 ntBASIC3.15□□□□□ -1.91
CLIP3Q96DZ5 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.15□□□□□ -1.91
CLIP3Q96DZ5 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
CLIP3Q96DZ5 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.91
CLIP3Q96DZ5 AL356274.2-201ENST00000624379 3752 ntBASIC3.14□□□□□ -1.91
CLIP3Q96DZ5 MIR410-201ENST00000362222 80 ntBASIC3.14□□□□□ -1.91
CLIP3Q96DZ5 SNORA25.1-201ENST00000362326 128 ntBASIC3.14□□□□□ -1.91
CLIP3Q96DZ5 RNU6-626P-201ENST00000363354 107 ntBASIC3.14□□□□□ -1.91
CLIP3Q96DZ5 RNU6-923P-201ENST00000364753 107 ntBASIC3.14□□□□□ -1.91
CLIP3Q96DZ5 RNU6-1180P-201ENST00000364935 107 ntBASIC3.14□□□□□ -1.91
CLIP3Q96DZ5 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
CLIP3Q96DZ5 RNU6-1145P-201ENST00000384246 107 ntBASIC3.14□□□□□ -1.91
CLIP3Q96DZ5 RNU6-1289P-201ENST00000384431 106 ntBASIC3.14□□□□□ -1.91
CLIP3Q96DZ5 RNU6-21P-201ENST00000384710 107 ntBASIC3.14□□□□□ -1.91
CLIP3Q96DZ5 AL357075.1-201ENST00000404107 726 ntBASIC3.14□□□□□ -1.91
CLIP3Q96DZ5 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.14□□□□□ -1.91
CLIP3Q96DZ5 RNA5SP344-201ENST00000411081 104 ntBASIC3.14□□□□□ -1.91
CLIP3Q96DZ5 RNU6-1001P-201ENST00000411265 100 ntBASIC3.14□□□□□ -1.91
CLIP3Q96DZ5 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC3.14□□□□□ -1.91
CLIP3Q96DZ5 WARS2P1-201ENST00000429678 537 ntBASIC3.14□□□□□ -1.91
CLIP3Q96DZ5 AC092427.1-202ENST00000430569 476 ntBASIC3.14□□□□□ -1.91
CLIP3Q96DZ5 UBBP3-201ENST00000445497 241 ntBASIC3.14□□□□□ -1.91
CLIP3Q96DZ5 RN7SL504P-201ENST00000494496 287 ntBASIC3.14□□□□□ -1.91
CLIP3Q96DZ5 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC3.14□□□□□ -1.91
CLIP3Q96DZ5 AC074133.1-201ENST00000515696 183 ntBASIC3.14□□□□□ -1.91
CLIP3Q96DZ5 Y_RNA.679-201ENST00000516416 91 ntBASIC3.14□□□□□ -1.91
CLIP3Q96DZ5 SNORA31.16-201ENST00000516773 139 ntBASIC3.14□□□□□ -1.91
CLIP3Q96DZ5 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC3.14□□□□□ -1.91
CLIP3Q96DZ5 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC3.14□□□□□ -1.91
CLIP3Q96DZ5 UBL5P4-201ENST00000562584 236 ntBASIC3.14□□□□□ -1.91
CLIP3Q96DZ5 AC090616.3-201ENST00000582184 217 ntBASIC3.14□□□□□ -1.91
CLIP3Q96DZ5 AC008749.1-201ENST00000597650 306 ntBASIC3.14□□□□□ -1.91
CLIP3Q96DZ5 AL670379.2-201ENST00000604983 252 ntBASIC3.14□□□□□ -1.91
CLIP3Q96DZ5 AC005000.2-201ENST00000605468 310 ntBASIC3.14□□□□□ -1.91
CLIP3Q96DZ5 AC037487.3-201ENST00000606668 112 ntBASIC3.14□□□□□ -1.91
CLIP3Q96DZ5 Clostridiales-1.2-201ENST00000636724 160 ntBASIC3.14□□□□□ -1.91
CLIP3Q96DZ5 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
CLIP3Q96DZ5 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.14□□□□□ -1.91
CLIP3Q96DZ5 AL353743.1-202ENST00000431724 1695 ntBASIC3.14□□□□□ -1.91
CLIP3Q96DZ5 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC3.14□□□□□ -1.91
CLIP3Q96DZ5 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.14□□□□□ -1.91
CLIP3Q96DZ5 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.13□□□□□ -1.91
CLIP3Q96DZ5 Y_RNA.8-201ENST00000362353 102 ntBASIC3.13□□□□□ -1.91
CLIP3Q96DZ5 RNU1-72P-201ENST00000362976 153 ntBASIC3.13□□□□□ -1.91
CLIP3Q96DZ5 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
CLIP3Q96DZ5 Y_RNA.441-201ENST00000384123 112 ntBASIC3.13□□□□□ -1.91
CLIP3Q96DZ5 RNU6-1081P-201ENST00000384537 107 ntBASIC3.13□□□□□ -1.91
CLIP3Q96DZ5 RNU6-220P-201ENST00000390919 107 ntBASIC3.13□□□□□ -1.91
CLIP3Q96DZ5 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.13□□□□□ -1.91
CLIP3Q96DZ5 AL445687.1-201ENST00000439946 251 ntBASIC3.13□□□□□ -1.91
CLIP3Q96DZ5 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC3.13□□□□□ -1.91
CLIP3Q96DZ5 Z75741.1-201ENST00000446793 314 ntBASIC3.13□□□□□ -1.91
CLIP3Q96DZ5 UQCRBP2-201ENST00000447827 297 ntBASIC3.13□□□□□ -1.91
CLIP3Q96DZ5 MRPS10P1-201ENST00000448483 130 ntBASIC3.13□□□□□ -1.91
CLIP3Q96DZ5 EEF1B2P7-201ENST00000451177 676 ntBASIC3.13□□□□□ -1.91
CLIP3Q96DZ5 RPL23AP3-201ENST00000453844 468 ntBASIC3.13□□□□□ -1.91
CLIP3Q96DZ5 RPS3P1-201ENST00000456781 192 ntBASIC3.13□□□□□ -1.91
CLIP3Q96DZ5 AC117440.1-201ENST00000474107 571 ntBASIC3.13□□□□□ -1.91
CLIP3Q96DZ5 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC3.13□□□□□ -1.91
CLIP3Q96DZ5 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC3.13□□□□□ -1.91
CLIP3Q96DZ5 YPEL5P2-201ENST00000605553 359 ntBASIC3.13□□□□□ -1.91
CLIP3Q96DZ5 AC108706.1-201ENST00000611053 297 ntBASIC3.13□□□□□ -1.91
CLIP3Q96DZ5 AC005296.1-201ENST00000616145 209 ntBASIC3.13□□□□□ -1.91
CLIP3Q96DZ5 IGHVIII-44-202ENST00000636235 289 ntBASIC3.13□□□□□ -1.91
CLIP3Q96DZ5 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC3.13□□□□□ -1.91
CLIP3Q96DZ5 AC017071.1-201ENST00000564407 2204 ntBASIC3.13□□□□□ -1.91
CLIP3Q96DZ5 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.13□□□□□ -1.91
CLIP3Q96DZ5 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.13□□□□□ -1.91
CLIP3Q96DZ5 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
CLIP3Q96DZ5 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
CLIP3Q96DZ5 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC3.12□□□□□ -1.91
CLIP3Q96DZ5 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC3.12□□□□□ -1.91
CLIP3Q96DZ5 Y_RNA.217-201ENST00000364214 105 ntBASIC3.12□□□□□ -1.91
CLIP3Q96DZ5 RNU6-1175P-201ENST00000365200 107 ntBASIC3.12□□□□□ -1.91
CLIP3Q96DZ5 MIR128-1-201ENST00000384921 82 ntBASIC3.12□□□□□ -1.91
CLIP3Q96DZ5 SNORA48.2-201ENST00000390926 124 ntBASIC3.12□□□□□ -1.91
CLIP3Q96DZ5 RNU6-159P-201ENST00000391080 106 ntBASIC3.12□□□□□ -1.91
CLIP3Q96DZ5 MIR887-201ENST00000401258 79 ntBASIC3.12□□□□□ -1.91
CLIP3Q96DZ5 FO393413.1-201ENST00000402892 195 ntBASIC3.12□□□□□ -1.91
CLIP3Q96DZ5 RNU5E-9P-201ENST00000411164 104 ntBASIC3.12□□□□□ -1.91
CLIP3Q96DZ5 RNA5SP492-201ENST00000411330 114 ntBASIC3.12□□□□□ -1.91
CLIP3Q96DZ5 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC3.12□□□□□ -1.91
CLIP3Q96DZ5 AC244505.4-201ENST00000434905 287 ntBASIC3.12□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 169.1 ms