Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 HMGN2P9-201ENST00000476875 229 ntBASIC2.11□□□□□ -2.07
SKA1Q96BD8 RNU4-49P-201ENST00000516080 140 ntBASIC2.11□□□□□ -2.07
SKA1Q96BD8 RNU1-40P-201ENST00000516816 164 ntBASIC2.11□□□□□ -2.07
SKA1Q96BD8 RNU1-97P-201ENST00000516872 164 ntBASIC2.11□□□□□ -2.07
SKA1Q96BD8 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC2.11□□□□□ -2.07
SKA1Q96BD8 ZNF355P-201ENST00000427301 3216 ntBASIC2.1□□□□□ -2.07
SKA1Q96BD8 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
SKA1Q96BD8 RNU6-661P-201ENST00000362409 107 ntBASIC2.1□□□□□ -2.07
SKA1Q96BD8 SNORA67.3-201ENST00000384366 140 ntBASIC2.1□□□□□ -2.07
SKA1Q96BD8 AC004866.1-201ENST00000411748 78 ntBASIC2.1□□□□□ -2.07
SKA1Q96BD8 AL445646.1-201ENST00000431784 216 ntBASIC2.1□□□□□ -2.07
SKA1Q96BD8 Z82188.1-201ENST00000436709 154 ntBASIC2.1□□□□□ -2.07
SKA1Q96BD8 MTND1P17-201ENST00000448961 204 ntBASIC2.1□□□□□ -2.07
SKA1Q96BD8 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC2.1□□□□□ -2.07
SKA1Q96BD8 AC010409.1-201ENST00000487382 476 ntBASIC2.1□□□□□ -2.07
SKA1Q96BD8 HMGB3P17-201ENST00000504195 649 ntBASIC2.1□□□□□ -2.07
SKA1Q96BD8 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC2.1□□□□□ -2.07
SKA1Q96BD8 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC2.1□□□□□ -2.07
SKA1Q96BD8 RNU6-1041P-201ENST00000516254 102 ntBASIC2.1□□□□□ -2.07
SKA1Q96BD8 SNORA31.17-201ENST00000516953 127 ntBASIC2.1□□□□□ -2.07
SKA1Q96BD8 AF235103.2-201ENST00000525753 346 ntBASIC2.1□□□□□ -2.07
SKA1Q96BD8 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC2.1□□□□□ -2.07
SKA1Q96BD8 MIR4790-201ENST00000577799 79 ntBASIC2.1□□□□□ -2.07
SKA1Q96BD8 MIR3198-2-201ENST00000577868 80 ntBASIC2.1□□□□□ -2.07
SKA1Q96BD8 SNORA59B-202ENST00000578183 701 ntBASIC2.1□□□□□ -2.07
SKA1Q96BD8 MIR5696-201ENST00000578474 85 ntBASIC2.1□□□□□ -2.07
SKA1Q96BD8 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC2.1□□□□□ -2.07
SKA1Q96BD8 AL078596.1-201ENST00000624856 447 ntBASIC2.1□□□□□ -2.07
SKA1Q96BD8 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC2.1□□□□□ -2.07
SKA1Q96BD8 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC2.1□□□□□ -2.07
SKA1Q96BD8 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.1□□□□□ -2.07
SKA1Q96BD8 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
SKA1Q96BD8 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.09□□□□□ -2.07
SKA1Q96BD8 AL356292.1-201ENST00000283110 373 ntBASIC2.09□□□□□ -2.07
SKA1Q96BD8 RNU6-862P-201ENST00000362804 105 ntBASIC2.09□□□□□ -2.07
SKA1Q96BD8 Y_RNA.86-201ENST00000363020 111 ntBASIC2.09□□□□□ -2.07
SKA1Q96BD8 RNU6-112P-201ENST00000363599 104 ntBASIC2.09□□□□□ -2.07
SKA1Q96BD8 RNU1-96P-201ENST00000364163 162 ntBASIC2.09□□□□□ -2.07
SKA1Q96BD8 MIR487A-201ENST00000385009 80 ntBASIC2.09□□□□□ -2.07
SKA1Q96BD8 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.09□□□□□ -2.07
SKA1Q96BD8 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC2.09□□□□□ -2.07
SKA1Q96BD8 RN7SKP210-201ENST00000459176 261 ntBASIC2.09□□□□□ -2.07
SKA1Q96BD8 FO393415.2-201ENST00000480085 343 ntBASIC2.09□□□□□ -2.07
SKA1Q96BD8 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC2.09□□□□□ -2.07
SKA1Q96BD8 AC008834.1-201ENST00000511612 175 ntBASIC2.09□□□□□ -2.07
SKA1Q96BD8 AC011406.1-201ENST00000512440 370 ntBASIC2.09□□□□□ -2.07
SKA1Q96BD8 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC2.09□□□□□ -2.07
SKA1Q96BD8 RNU6-295P-201ENST00000516901 104 ntBASIC2.09□□□□□ -2.07
SKA1Q96BD8 RNU6-58P-201ENST00000517143 103 ntBASIC2.09□□□□□ -2.07
SKA1Q96BD8 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC2.09□□□□□ -2.07
SKA1Q96BD8 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC2.09□□□□□ -2.07
SKA1Q96BD8 SNORD11B-201ENST00000607707 90 ntBASIC2.09□□□□□ -2.07
SKA1Q96BD8 AL353149.1-201ENST00000610667 244 ntBASIC2.09□□□□□ -2.07
SKA1Q96BD8 MIR6128-201ENST00000615528 109 ntBASIC2.09□□□□□ -2.07
SKA1Q96BD8 AC009248.2-201ENST00000619826 254 ntBASIC2.09□□□□□ -2.07
SKA1Q96BD8 Y_RNA.301-201ENST00000364990 103 ntBASIC2.08□□□□□ -2.08
SKA1Q96BD8 MIR583-201ENST00000384846 75 ntBASIC2.08□□□□□ -2.08
SKA1Q96BD8 MIR520A-201ENST00000384862 85 ntBASIC2.08□□□□□ -2.08
SKA1Q96BD8 MIR30A-201ENST00000385092 71 ntBASIC2.08□□□□□ -2.08
SKA1Q96BD8 SNORA26.9-201ENST00000391322 122 ntBASIC2.08□□□□□ -2.08
SKA1Q96BD8 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC2.08□□□□□ -2.08
SKA1Q96BD8 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC2.08□□□□□ -2.08
SKA1Q96BD8 HMGN1P13-201ENST00000505795 138 ntBASIC2.08□□□□□ -2.08
SKA1Q96BD8 TRAPPC2P7-201ENST00000509650 231 ntBASIC2.08□□□□□ -2.08
SKA1Q96BD8 RNU7-175P-201ENST00000515915 61 ntBASIC2.08□□□□□ -2.08
SKA1Q96BD8 RNU6-1146P-201ENST00000516282 102 ntBASIC2.08□□□□□ -2.08
SKA1Q96BD8 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC2.08□□□□□ -2.08
SKA1Q96BD8 MIR3935-201ENST00000583472 104 ntBASIC2.08□□□□□ -2.08
SKA1Q96BD8 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC2.08□□□□□ -2.08
SKA1Q96BD8 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.08□□□□□ -2.08
SKA1Q96BD8 AC008873.1-201ENST00000625051 138 ntBASIC2.08□□□□□ -2.08
SKA1Q96BD8 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.08□□□□□ -2.08
SKA1Q96BD8 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
SKA1Q96BD8 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC2.07□□□□□ -2.08
SKA1Q96BD8 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.07□□□□□ -2.08
SKA1Q96BD8 RNU6-1019P-201ENST00000364424 107 ntBASIC2.07□□□□□ -2.08
SKA1Q96BD8 Y_RNA.490-201ENST00000384413 102 ntBASIC2.07□□□□□ -2.08
SKA1Q96BD8 MIR764-201ENST00000390811 85 ntBASIC2.07□□□□□ -2.08
SKA1Q96BD8 5S_rRNA.2-201ENST00000391293 112 ntBASIC2.07□□□□□ -2.08
SKA1Q96BD8 RNU6-174P-201ENST00000410406 106 ntBASIC2.07□□□□□ -2.08
SKA1Q96BD8 RNU2-7P-201ENST00000410794 178 ntBASIC2.07□□□□□ -2.08
SKA1Q96BD8 AC243428.1-201ENST00000421099 264 ntBASIC2.07□□□□□ -2.08
SKA1Q96BD8 AC060773.1-201ENST00000421698 310 ntBASIC2.07□□□□□ -2.08
SKA1Q96BD8 CST2P1-201ENST00000425770 87 ntBASIC2.07□□□□□ -2.08
SKA1Q96BD8 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC2.07□□□□□ -2.08
SKA1Q96BD8 MTND1P4-201ENST00000435196 415 ntBASIC2.07□□□□□ -2.08
SKA1Q96BD8 AC069257.2-201ENST00000441819 155 ntBASIC2.07□□□□□ -2.08
SKA1Q96BD8 AC016717.1-201ENST00000448918 286 ntBASIC2.07□□□□□ -2.08
SKA1Q96BD8 RNU7-57P-201ENST00000459540 60 ntBASIC2.07□□□□□ -2.08
SKA1Q96BD8 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC2.07□□□□□ -2.08
SKA1Q96BD8 RNA5SP182-201ENST00000516064 82 ntBASIC2.07□□□□□ -2.08
SKA1Q96BD8 SNORA25.14-201ENST00000516481 132 ntBASIC2.07□□□□□ -2.08
SKA1Q96BD8 RNU1-117P-201ENST00000517041 158 ntBASIC2.07□□□□□ -2.08
SKA1Q96BD8 AL590705.4-201ENST00000532209 134 ntBASIC2.07□□□□□ -2.08
SKA1Q96BD8 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC2.07□□□□□ -2.08
SKA1Q96BD8 AC080078.2-201ENST00000603766 501 ntBASIC2.07□□□□□ -2.08
SKA1Q96BD8 AC012493.3-201ENST00000604494 112 ntBASIC2.07□□□□□ -2.08
SKA1Q96BD8 ZNF299P-201ENST00000406845 1804 ntBASIC2.07□□□□□ -2.08
SKA1Q96BD8 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
SKA1Q96BD8 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 123.1 ms