Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.25□□□□□ -1.89
SMC1BQ8NDV3 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC3.24□□□□□ -1.89
SMC1BQ8NDV3 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.24□□□□□ -1.89
SMC1BQ8NDV3 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC3.24□□□□□ -1.89
SMC1BQ8NDV3 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.24□□□□□ -1.89
SMC1BQ8NDV3 SNORD21-201ENST00000383953 95 ntBASIC3.24□□□□□ -1.89
SMC1BQ8NDV3 RNU6-245P-201ENST00000384020 107 ntBASIC3.24□□□□□ -1.89
SMC1BQ8NDV3 RNU6-281P-201ENST00000384212 103 ntBASIC3.24□□□□□ -1.89
SMC1BQ8NDV3 Y_RNA.466-201ENST00000384294 113 ntBASIC3.24□□□□□ -1.89
SMC1BQ8NDV3 Y_RNA.508-201ENST00000384502 114 ntBASIC3.24□□□□□ -1.89
SMC1BQ8NDV3 SNORA46-201ENST00000384762 135 ntBASIC3.24□□□□□ -1.89
SMC1BQ8NDV3 MIR29B2-201ENST00000385055 81 ntBASIC3.24□□□□□ -1.89
SMC1BQ8NDV3 RNA5SP213-201ENST00000391031 106 ntBASIC3.24□□□□□ -1.89
SMC1BQ8NDV3 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC3.24□□□□□ -1.89
SMC1BQ8NDV3 RNA5SP274-201ENST00000410484 108 ntBASIC3.24□□□□□ -1.89
SMC1BQ8NDV3 RPEP5-201ENST00000441137 268 ntBASIC3.24□□□□□ -1.89
SMC1BQ8NDV3 HMGN2P23-201ENST00000456759 269 ntBASIC3.24□□□□□ -1.89
SMC1BQ8NDV3 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC3.24□□□□□ -1.89
SMC1BQ8NDV3 AC140059.1-201ENST00000489238 361 ntBASIC3.24□□□□□ -1.89
SMC1BQ8NDV3 AC010469.2-201ENST00000496412 480 ntBASIC3.24□□□□□ -1.89
SMC1BQ8NDV3 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC3.24□□□□□ -1.89
SMC1BQ8NDV3 RNU6-397P-201ENST00000516226 104 ntBASIC3.24□□□□□ -1.89
SMC1BQ8NDV3 SNORA25.14-201ENST00000516481 132 ntBASIC3.24□□□□□ -1.89
SMC1BQ8NDV3 COX6CP5-201ENST00000527162 228 ntBASIC3.24□□□□□ -1.89
SMC1BQ8NDV3 AC026470.2-201ENST00000561492 181 ntBASIC3.24□□□□□ -1.89
SMC1BQ8NDV3 AC046143.2-201ENST00000609789 160 ntBASIC3.24□□□□□ -1.89
SMC1BQ8NDV3 AC090517.3-201ENST00000625170 141 ntBASIC3.24□□□□□ -1.89
SMC1BQ8NDV3 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
SMC1BQ8NDV3 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.23□□□□□ -1.89
SMC1BQ8NDV3 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
SMC1BQ8NDV3 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
SMC1BQ8NDV3 RNU6-873P-201ENST00000363833 107 ntBASIC3.23□□□□□ -1.89
SMC1BQ8NDV3 SNORA68.1-201ENST00000364537 132 ntBASIC3.23□□□□□ -1.89
SMC1BQ8NDV3 SET-203ENST00000372688 801 ntTSL 2 BASIC3.23□□□□□ -1.89
SMC1BQ8NDV3 Y_RNA.439-201ENST00000384119 94 ntBASIC3.23□□□□□ -1.89
SMC1BQ8NDV3 Y_RNA.458-201ENST00000384240 102 ntBASIC3.23□□□□□ -1.89
SMC1BQ8NDV3 RNU6-611P-201ENST00000384276 104 ntBASIC3.23□□□□□ -1.89
SMC1BQ8NDV3 MIR27B-201ENST00000385129 97 ntBASIC3.23□□□□□ -1.89
SMC1BQ8NDV3 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC3.23□□□□□ -1.89
SMC1BQ8NDV3 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.23□□□□□ -1.89
SMC1BQ8NDV3 AC104332.2-201ENST00000429959 156 ntBASIC3.23□□□□□ -1.89
SMC1BQ8NDV3 AL445305.1-201ENST00000432577 575 ntBASIC3.23□□□□□ -1.89
SMC1BQ8NDV3 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC3.23□□□□□ -1.89
SMC1BQ8NDV3 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC3.23□□□□□ -1.89
SMC1BQ8NDV3 RN7SL499P-201ENST00000481141 276 ntBASIC3.23□□□□□ -1.89
SMC1BQ8NDV3 AC067942.3-201ENST00000512025 362 ntBASIC3.23□□□□□ -1.89
SMC1BQ8NDV3 RNA5SP445-201ENST00000515889 115 ntBASIC3.23□□□□□ -1.89
SMC1BQ8NDV3 RNY3P15-201ENST00000516297 97 ntBASIC3.23□□□□□ -1.89
SMC1BQ8NDV3 RN7SKP49-201ENST00000516675 260 ntBASIC3.23□□□□□ -1.89
SMC1BQ8NDV3 SCARNA3-201ENST00000517097 143 ntBASIC3.23□□□□□ -1.89
SMC1BQ8NDV3 RNU6-897P-201ENST00000517135 105 ntBASIC3.23□□□□□ -1.89
SMC1BQ8NDV3 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC3.23□□□□□ -1.89
SMC1BQ8NDV3 AL161670.1-201ENST00000554348 137 ntBASIC3.23□□□□□ -1.89
SMC1BQ8NDV3 AC125232.2-201ENST00000592457 143 ntBASIC3.23□□□□□ -1.89
SMC1BQ8NDV3 AC010205.1-201ENST00000616668 449 ntBASIC3.23□□□□□ -1.89
SMC1BQ8NDV3 AC092435.3-201ENST00000565538 3654 ntBASIC3.23□□□□□ -1.89
SMC1BQ8NDV3 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
SMC1BQ8NDV3 Y_RNA.183-201ENST00000363882 113 ntBASIC3.22□□□□□ -1.89
SMC1BQ8NDV3 RNU6-318P-201ENST00000384283 103 ntBASIC3.22□□□□□ -1.89
SMC1BQ8NDV3 SNORA46.1-201ENST00000391069 153 ntBASIC3.22□□□□□ -1.89
SMC1BQ8NDV3 RPL21P1-201ENST00000399532 476 ntBASIC3.22□□□□□ -1.89
SMC1BQ8NDV3 SNORD12B-201ENST00000410433 91 ntBASIC3.22□□□□□ -1.89
SMC1BQ8NDV3 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC3.22□□□□□ -1.89
SMC1BQ8NDV3 AL731563.1-201ENST00000442202 214 ntBASIC3.22□□□□□ -1.89
SMC1BQ8NDV3 AC103975.1-201ENST00000482506 483 ntBASIC3.22□□□□□ -1.89
SMC1BQ8NDV3 RNU6-1012P-201ENST00000516606 109 ntBASIC3.22□□□□□ -1.89
SMC1BQ8NDV3 MIR4659A-201ENST00000580269 81 ntBASIC3.22□□□□□ -1.89
SMC1BQ8NDV3 MIR3199-1-201ENST00000582434 88 ntBASIC3.22□□□□□ -1.89
SMC1BQ8NDV3 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC3.22□□□□□ -1.89
SMC1BQ8NDV3 AC010620.2-201ENST00000600135 313 ntBASIC3.22□□□□□ -1.89
SMC1BQ8NDV3 AC010999.1-201ENST00000611856 324 ntBASIC3.22□□□□□ -1.89
SMC1BQ8NDV3 AC240442.1-201ENST00000616055 283 ntBASIC3.22□□□□□ -1.89
SMC1BQ8NDV3 U4.1-201ENST00000620349 87 ntBASIC3.22□□□□□ -1.89
SMC1BQ8NDV3 AC130454.1-201ENST00000622948 401 ntBASIC3.22□□□□□ -1.89
SMC1BQ8NDV3 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC3.21□□□□□ -1.89
SMC1BQ8NDV3 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
SMC1BQ8NDV3 RNA5SP361-201ENST00000362686 118 ntBASIC3.21□□□□□ -1.9
SMC1BQ8NDV3 SNORD114-30-201ENST00000364448 72 ntBASIC3.21□□□□□ -1.9
SMC1BQ8NDV3 Y_RNA.556-201ENST00000384677 113 ntBASIC3.21□□□□□ -1.9
SMC1BQ8NDV3 MIR218-1-201ENST00000384999 110 ntBASIC3.21□□□□□ -1.9
SMC1BQ8NDV3 MIR568-201ENST00000385036 95 ntBASIC3.21□□□□□ -1.9
SMC1BQ8NDV3 U6atac.2-201ENST00000408644 118 ntBASIC3.21□□□□□ -1.9
SMC1BQ8NDV3 RNU6-1001P-201ENST00000411265 100 ntBASIC3.21□□□□□ -1.9
SMC1BQ8NDV3 RPL23AP36-201ENST00000413895 458 ntBASIC3.21□□□□□ -1.9
SMC1BQ8NDV3 IPO7P1-201ENST00000442031 636 ntBASIC3.21□□□□□ -1.9
SMC1BQ8NDV3 DYNLT3P2-201ENST00000442517 295 ntBASIC3.21□□□□□ -1.9
SMC1BQ8NDV3 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC3.21□□□□□ -1.9
SMC1BQ8NDV3 HSPE1P18-201ENST00000517602 280 ntBASIC3.21□□□□□ -1.9
SMC1BQ8NDV3 CYCSP23-201ENST00000519781 313 ntBASIC3.21□□□□□ -1.9
SMC1BQ8NDV3 MIR4503-201ENST00000582187 83 ntBASIC3.21□□□□□ -1.9
SMC1BQ8NDV3 MIR3149-201ENST00000584629 83 ntBASIC3.21□□□□□ -1.9
SMC1BQ8NDV3 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC3.21□□□□□ -1.9
SMC1BQ8NDV3 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
SMC1BQ8NDV3 Y_RNA.179-201ENST00000363844 90 ntBASIC3.2□□□□□ -1.9
SMC1BQ8NDV3 RNU6-770P-201ENST00000363929 105 ntBASIC3.2□□□□□ -1.9
SMC1BQ8NDV3 Y_RNA.214-201ENST00000364201 112 ntBASIC3.2□□□□□ -1.9
SMC1BQ8NDV3 Y_RNA.452-201ENST00000384202 108 ntBASIC3.2□□□□□ -1.9
SMC1BQ8NDV3 Y_RNA.595-201ENST00000410403 105 ntBASIC3.2□□□□□ -1.9
SMC1BQ8NDV3 ELOCP20-201ENST00000422460 345 ntBASIC3.2□□□□□ -1.9
SMC1BQ8NDV3 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC3.2□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 110.6 ms