Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 AP000870.1-201ENST00000472927 406 ntBASIC2.93□□□□□ -1.94
VPS53Q5VIR6 AIG1P1-201ENST00000503376 148 ntBASIC2.93□□□□□ -1.94
VPS53Q5VIR6 AC067942.3-201ENST00000512025 362 ntBASIC2.93□□□□□ -1.94
VPS53Q5VIR6 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC2.93□□□□□ -1.94
VPS53Q5VIR6 SNORA40.15-201ENST00000516884 107 ntBASIC2.93□□□□□ -1.94
VPS53Q5VIR6 Y_RNA.713-201ENST00000517013 96 ntBASIC2.93□□□□□ -1.94
VPS53Q5VIR6 RNU6-897P-201ENST00000517135 105 ntBASIC2.93□□□□□ -1.94
VPS53Q5VIR6 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.93□□□□□ -1.94
VPS53Q5VIR6 AL078605.1-201ENST00000603529 500 ntBASIC2.93□□□□□ -1.94
VPS53Q5VIR6 AL138963.2-201ENST00000605137 226 ntBASIC2.93□□□□□ -1.94
VPS53Q5VIR6 OR56A5-201ENST00000340110 738 ntBASIC2.92□□□□□ -1.94
VPS53Q5VIR6 RNA5SP289-201ENST00000362332 137 ntBASIC2.92□□□□□ -1.94
VPS53Q5VIR6 RNU6-770P-201ENST00000363929 105 ntBASIC2.92□□□□□ -1.94
VPS53Q5VIR6 Y_RNA.458-201ENST00000384240 102 ntBASIC2.92□□□□□ -1.94
VPS53Q5VIR6 AL359511.1-201ENST00000402970 211 ntBASIC2.92□□□□□ -1.94
VPS53Q5VIR6 AL133475.1-201ENST00000404414 305 ntBASIC2.92□□□□□ -1.94
VPS53Q5VIR6 RNU6-1140P-201ENST00000410517 106 ntBASIC2.92□□□□□ -1.94
VPS53Q5VIR6 AC138623.1-201ENST00000418060 216 ntBASIC2.92□□□□□ -1.94
VPS53Q5VIR6 AL590135.1-201ENST00000422215 156 ntBASIC2.92□□□□□ -1.94
VPS53Q5VIR6 AC019205.3-201ENST00000424573 156 ntBASIC2.92□□□□□ -1.94
VPS53Q5VIR6 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC2.92□□□□□ -1.94
VPS53Q5VIR6 AC016700.2-201ENST00000446011 156 ntBASIC2.92□□□□□ -1.94
VPS53Q5VIR6 AC010469.2-201ENST00000496412 480 ntBASIC2.92□□□□□ -1.94
VPS53Q5VIR6 Y_RNA.668-201ENST00000516233 93 ntBASIC2.92□□□□□ -1.94
VPS53Q5VIR6 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC2.92□□□□□ -1.94
VPS53Q5VIR6 AC130454.1-201ENST00000622948 401 ntBASIC2.92□□□□□ -1.94
VPS53Q5VIR6 IGHVIII-44-202ENST00000636235 289 ntBASIC2.92□□□□□ -1.94
VPS53Q5VIR6 U6.92-201ENST00000636464 89 ntBASIC2.92□□□□□ -1.94
VPS53Q5VIR6 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.91□□□□□ -1.94
VPS53Q5VIR6 RNU6-1301P-201ENST00000362724 104 ntBASIC2.91□□□□□ -1.94
VPS53Q5VIR6 RNU6-541P-201ENST00000384709 110 ntBASIC2.91□□□□□ -1.94
VPS53Q5VIR6 RNU6-159P-201ENST00000391080 106 ntBASIC2.91□□□□□ -1.94
VPS53Q5VIR6 RNA5SP181-201ENST00000410246 98 ntBASIC2.91□□□□□ -1.94
VPS53Q5VIR6 RNU6-130P-201ENST00000411112 103 ntBASIC2.91□□□□□ -1.94
VPS53Q5VIR6 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC2.91□□□□□ -1.94
VPS53Q5VIR6 AC096638.1-201ENST00000444678 216 ntBASIC2.91□□□□□ -1.94
VPS53Q5VIR6 RNU7-26P-201ENST00000458980 63 ntBASIC2.91□□□□□ -1.94
VPS53Q5VIR6 RNU6-1012P-201ENST00000516606 109 ntBASIC2.91□□□□□ -1.94
VPS53Q5VIR6 SNORA31.16-201ENST00000516773 139 ntBASIC2.91□□□□□ -1.94
VPS53Q5VIR6 RNA5SP54-201ENST00000516951 92 ntBASIC2.91□□□□□ -1.94
VPS53Q5VIR6 RNU6-58P-201ENST00000517143 103 ntBASIC2.91□□□□□ -1.94
VPS53Q5VIR6 AC022868.1-201ENST00000517767 391 ntBASIC2.91□□□□□ -1.94
VPS53Q5VIR6 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC2.91□□□□□ -1.94
VPS53Q5VIR6 AC046143.2-201ENST00000609789 160 ntBASIC2.91□□□□□ -1.94
VPS53Q5VIR6 AC005520.5-201ENST00000613926 164 ntBASIC2.91□□□□□ -1.94
VPS53Q5VIR6 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.91□□□□□ -1.94
VPS53Q5VIR6 FO624990.1-201ENST00000636373 85 ntBASIC2.91□□□□□ -1.94
VPS53Q5VIR6 SNORD98-201ENST00000636377 67 ntBASIC2.91□□□□□ -1.94
VPS53Q5VIR6 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.91□□□□□ -1.94
VPS53Q5VIR6 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
VPS53Q5VIR6 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC2.91□□□□□ -1.94
VPS53Q5VIR6 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
VPS53Q5VIR6 Z82195.2-201ENST00000612348 18351 ntBASIC2.9□□□□□ -1.94
VPS53Q5VIR6 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC2.9□□□□□ -1.95
VPS53Q5VIR6 RNU6-212P-201ENST00000362642 104 ntBASIC2.9□□□□□ -1.95
VPS53Q5VIR6 RNU6-529P-201ENST00000363383 104 ntBASIC2.9□□□□□ -1.95
VPS53Q5VIR6 SNORA38-201ENST00000363946 132 ntBASIC2.9□□□□□ -1.95
VPS53Q5VIR6 RNU4-56P-201ENST00000364700 142 ntBASIC2.9□□□□□ -1.95
VPS53Q5VIR6 RNU6-505P-201ENST00000384427 107 ntBASIC2.9□□□□□ -1.95
VPS53Q5VIR6 Y_RNA.512-201ENST00000384518 102 ntBASIC2.9□□□□□ -1.95
VPS53Q5VIR6 MIR10B-201ENST00000385011 110 ntBASIC2.9□□□□□ -1.95
VPS53Q5VIR6 SNORD78.2-201ENST00000391076 69 ntBASIC2.9□□□□□ -1.95
VPS53Q5VIR6 AL513328.1-201ENST00000446460 224 ntBASIC2.9□□□□□ -1.95
VPS53Q5VIR6 HMGB1P35-201ENST00000503360 598 ntBASIC2.9□□□□□ -1.95
VPS53Q5VIR6 AC025465.3-201ENST00000510570 311 ntBASIC2.9□□□□□ -1.95
VPS53Q5VIR6 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.9□□□□□ -1.95
VPS53Q5VIR6 RNU5F-2P-201ENST00000516066 82 ntBASIC2.9□□□□□ -1.95
VPS53Q5VIR6 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC2.9□□□□□ -1.95
VPS53Q5VIR6 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC2.9□□□□□ -1.95
VPS53Q5VIR6 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC2.9□□□□□ -1.95
VPS53Q5VIR6 CYP4A27P-201ENST00000567218 190 ntBASIC2.9□□□□□ -1.95
VPS53Q5VIR6 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC2.9□□□□□ -1.95
VPS53Q5VIR6 NAA50-211ENST00000630058 177 ntTSL 5 BASIC2.9□□□□□ -1.95
VPS53Q5VIR6 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
VPS53Q5VIR6 MIR21-201ENST00000362134 72 ntBASIC2.89□□□□□ -1.95
VPS53Q5VIR6 RNU4-82P-201ENST00000362443 140 ntBASIC2.89□□□□□ -1.95
VPS53Q5VIR6 Y_RNA.19-201ENST00000362462 99 ntBASIC2.89□□□□□ -1.95
VPS53Q5VIR6 Y_RNA.40-201ENST00000362645 93 ntBASIC2.89□□□□□ -1.95
VPS53Q5VIR6 RNU6-1072P-201ENST00000384703 107 ntBASIC2.89□□□□□ -1.95
VPS53Q5VIR6 RNU6-443P-201ENST00000384780 107 ntBASIC2.89□□□□□ -1.95
VPS53Q5VIR6 AIMP1P2-201ENST00000425294 312 ntBASIC2.89□□□□□ -1.95
VPS53Q5VIR6 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC2.89□□□□□ -1.95
VPS53Q5VIR6 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC2.89□□□□□ -1.95
VPS53Q5VIR6 snoU13.6-201ENST00000458785 104 ntBASIC2.89□□□□□ -1.95
VPS53Q5VIR6 RNU6-397P-201ENST00000516226 104 ntBASIC2.89□□□□□ -1.95
VPS53Q5VIR6 RNY3P15-201ENST00000516297 97 ntBASIC2.89□□□□□ -1.95
VPS53Q5VIR6 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC2.89□□□□□ -1.95
VPS53Q5VIR6 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.89□□□□□ -1.95
VPS53Q5VIR6 AC125232.2-201ENST00000592457 143 ntBASIC2.89□□□□□ -1.95
VPS53Q5VIR6 AL034555.1-201ENST00000604816 211 ntBASIC2.89□□□□□ -1.95
VPS53Q5VIR6 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC2.88□□□□□ -1.95
VPS53Q5VIR6 AC016717.2-201ENST00000609089 5141 ntBASIC2.88□□□□□ -1.95
VPS53Q5VIR6 RNU5F-3P-201ENST00000363767 117 ntBASIC2.88□□□□□ -1.95
VPS53Q5VIR6 Y_RNA.439-201ENST00000384119 94 ntBASIC2.88□□□□□ -1.95
VPS53Q5VIR6 RNU6-281P-201ENST00000384212 103 ntBASIC2.88□□□□□ -1.95
VPS53Q5VIR6 RNU6-318P-201ENST00000384283 103 ntBASIC2.88□□□□□ -1.95
VPS53Q5VIR6 RNU6-472P-201ENST00000384299 107 ntBASIC2.88□□□□□ -1.95
VPS53Q5VIR6 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.88□□□□□ -1.95
VPS53Q5VIR6 TRAPPC2P8-201ENST00000440676 396 ntBASIC2.88□□□□□ -1.95
VPS53Q5VIR6 PCNPP5-201ENST00000452246 481 ntBASIC2.88□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 109.1 ms