Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 AC018868.1-201ENST00000491307 315 ntBASIC3.27□□□□□ -1.89
CCDC144BQ3MJ40 RNA5SP490-201ENST00000517141 136 ntBASIC3.27□□□□□ -1.89
CCDC144BQ3MJ40 MIR4753-201ENST00000585119 83 ntBASIC3.27□□□□□ -1.89
CCDC144BQ3MJ40 MZT1P2-201ENST00000604387 248 ntBASIC3.27□□□□□ -1.89
CCDC144BQ3MJ40 AC013412.1-201ENST00000610687 192 ntBASIC3.27□□□□□ -1.89
CCDC144BQ3MJ40 AC108206.1-201ENST00000570186 4159 ntBASIC3.26□□□□□ -1.89
CCDC144BQ3MJ40 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
CCDC144BQ3MJ40 ANKRD36BP1-201ENST00000358576 1779 ntBASIC3.26□□□□□ -1.89
CCDC144BQ3MJ40 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
CCDC144BQ3MJ40 RNU4-82P-201ENST00000362443 140 ntBASIC3.26□□□□□ -1.89
CCDC144BQ3MJ40 RNU1-35P-201ENST00000362782 153 ntBASIC3.26□□□□□ -1.89
CCDC144BQ3MJ40 Y_RNA.162-201ENST00000363683 102 ntBASIC3.26□□□□□ -1.89
CCDC144BQ3MJ40 RNU6-985P-201ENST00000410182 104 ntBASIC3.26□□□□□ -1.89
CCDC144BQ3MJ40 RNU2-48P-201ENST00000410694 191 ntBASIC3.26□□□□□ -1.89
CCDC144BQ3MJ40 RN7SKP284-201ENST00000411002 343 ntBASIC3.26□□□□□ -1.89
CCDC144BQ3MJ40 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC3.26□□□□□ -1.89
CCDC144BQ3MJ40 HMGN2P18-201ENST00000450680 270 ntBASIC3.26□□□□□ -1.89
CCDC144BQ3MJ40 SRP72-202ENST00000504757 745 ntTSL 2 BASIC3.26□□□□□ -1.89
CCDC144BQ3MJ40 SCARNA15.1-201ENST00000516384 125 ntBASIC3.26□□□□□ -1.89
CCDC144BQ3MJ40 RNU6-1012P-201ENST00000516606 109 ntBASIC3.26□□□□□ -1.89
CCDC144BQ3MJ40 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC3.26□□□□□ -1.89
CCDC144BQ3MJ40 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC3.26□□□□□ -1.89
CCDC144BQ3MJ40 AC010205.1-201ENST00000616668 449 ntBASIC3.26□□□□□ -1.89
CCDC144BQ3MJ40 AC008873.1-201ENST00000625051 138 ntBASIC3.26□□□□□ -1.89
CCDC144BQ3MJ40 IGHVIII-44-202ENST00000636235 289 ntBASIC3.26□□□□□ -1.89
CCDC144BQ3MJ40 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
CCDC144BQ3MJ40 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
CCDC144BQ3MJ40 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
CCDC144BQ3MJ40 Y_RNA.145-201ENST00000363527 102 ntBASIC3.25□□□□□ -1.89
CCDC144BQ3MJ40 RNU1-109P-201ENST00000383960 147 ntBASIC3.25□□□□□ -1.89
CCDC144BQ3MJ40 MRPL35P1-201ENST00000404272 572 ntBASIC3.25□□□□□ -1.89
CCDC144BQ3MJ40 MIR1283-1-201ENST00000408494 87 ntBASIC3.25□□□□□ -1.89
CCDC144BQ3MJ40 SNORD88.1-201ENST00000408684 91 ntBASIC3.25□□□□□ -1.89
CCDC144BQ3MJ40 MIR1252-201ENST00000408861 65 ntBASIC3.25□□□□□ -1.89
CCDC144BQ3MJ40 AC004866.1-201ENST00000411748 78 ntBASIC3.25□□□□□ -1.89
CCDC144BQ3MJ40 SRIP3-201ENST00000413200 219 ntBASIC3.25□□□□□ -1.89
CCDC144BQ3MJ40 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC3.25□□□□□ -1.89
CCDC144BQ3MJ40 UQCRBP2-201ENST00000447827 297 ntBASIC3.25□□□□□ -1.89
CCDC144BQ3MJ40 NDUFB4P10-201ENST00000452541 359 ntBASIC3.25□□□□□ -1.89
CCDC144BQ3MJ40 AL137159.1-201ENST00000452808 512 ntBASIC3.25□□□□□ -1.89
CCDC144BQ3MJ40 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC3.25□□□□□ -1.89
CCDC144BQ3MJ40 U8.20-201ENST00000459445 131 ntBASIC3.25□□□□□ -1.89
CCDC144BQ3MJ40 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC3.25□□□□□ -1.89
CCDC144BQ3MJ40 RNU6-764P-201ENST00000516396 105 ntBASIC3.25□□□□□ -1.89
CCDC144BQ3MJ40 AC026271.5-201ENST00000577873 130 ntBASIC3.25□□□□□ -1.89
CCDC144BQ3MJ40 Y_RNA.772-201ENST00000606692 102 ntBASIC3.25□□□□□ -1.89
CCDC144BQ3MJ40 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
CCDC144BQ3MJ40 MAPK10-266ENST00000641066 6555 ntBASIC3.25□□□□□ -1.89
CCDC144BQ3MJ40 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC3.25□□□□□ -1.89
CCDC144BQ3MJ40 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC3.24□□□□□ -1.89
CCDC144BQ3MJ40 RNU6-727P-201ENST00000363592 107 ntBASIC3.24□□□□□ -1.89
CCDC144BQ3MJ40 RNU6-743P-201ENST00000364151 106 ntBASIC3.24□□□□□ -1.89
CCDC144BQ3MJ40 RNU2-52P-201ENST00000410680 190 ntBASIC3.24□□□□□ -1.89
CCDC144BQ3MJ40 AC245102.2-201ENST00000448956 180 ntBASIC3.24□□□□□ -1.89
CCDC144BQ3MJ40 SNORD109B-201ENST00000458961 67 ntBASIC3.24□□□□□ -1.89
CCDC144BQ3MJ40 SNORD109A-201ENST00000459128 67 ntBASIC3.24□□□□□ -1.89
CCDC144BQ3MJ40 RN7SL297P-201ENST00000483161 293 ntBASIC3.24□□□□□ -1.89
CCDC144BQ3MJ40 Y_RNA.715-201ENST00000517082 110 ntBASIC3.24□□□□□ -1.89
CCDC144BQ3MJ40 CYCSP26-201ENST00000534107 320 ntBASIC3.24□□□□□ -1.89
CCDC144BQ3MJ40 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC3.24□□□□□ -1.89
CCDC144BQ3MJ40 AC233702.2-202ENST00000562547 291 ntBASIC3.24□□□□□ -1.89
CCDC144BQ3MJ40 MIR3945-201ENST00000581853 98 ntBASIC3.24□□□□□ -1.89
CCDC144BQ3MJ40 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.24□□□□□ -1.89
CCDC144BQ3MJ40 AL078596.1-201ENST00000624856 447 ntBASIC3.24□□□□□ -1.89
CCDC144BQ3MJ40 U6.92-201ENST00000636464 89 ntBASIC3.24□□□□□ -1.89
CCDC144BQ3MJ40 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
CCDC144BQ3MJ40 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.23□□□□□ -1.89
CCDC144BQ3MJ40 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
CCDC144BQ3MJ40 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC3.23□□□□□ -1.89
CCDC144BQ3MJ40 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
CCDC144BQ3MJ40 U3.8-201ENST00000363675 217 ntBASIC3.23□□□□□ -1.89
CCDC144BQ3MJ40 AL356057.3-201ENST00000402607 340 ntBASIC3.23□□□□□ -1.89
CCDC144BQ3MJ40 EDDM3CP-201ENST00000415977 425 ntBASIC3.23□□□□□ -1.89
CCDC144BQ3MJ40 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC3.23□□□□□ -1.89
CCDC144BQ3MJ40 AC016925.1-201ENST00000458303 298 ntBASIC3.23□□□□□ -1.89
CCDC144BQ3MJ40 SNORA40.9-201ENST00000515895 93 ntBASIC3.23□□□□□ -1.89
CCDC144BQ3MJ40 RNU1-117P-201ENST00000517041 158 ntBASIC3.23□□□□□ -1.89
CCDC144BQ3MJ40 MIR4659A-201ENST00000580269 81 ntBASIC3.23□□□□□ -1.89
CCDC144BQ3MJ40 AL355297.3-201ENST00000604082 446 ntBASIC3.23□□□□□ -1.89
CCDC144BQ3MJ40 AC240442.1-201ENST00000616055 283 ntBASIC3.23□□□□□ -1.89
CCDC144BQ3MJ40 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
CCDC144BQ3MJ40 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC3.23□□□□□ -1.89
CCDC144BQ3MJ40 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC3.23□□□□□ -1.89
CCDC144BQ3MJ40 AC009487.4-201ENST00000624969 3585 ntBASIC3.23□□□□□ -1.89
CCDC144BQ3MJ40 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
CCDC144BQ3MJ40 FTX-214ENST00000638437 12267 ntTSL 5 BASIC3.22□□□□□ -1.89
CCDC144BQ3MJ40 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
CCDC144BQ3MJ40 RNU6-545P-201ENST00000362681 104 ntBASIC3.22□□□□□ -1.89
CCDC144BQ3MJ40 RNU6-1305P-201ENST00000364353 104 ntBASIC3.22□□□□□ -1.89
CCDC144BQ3MJ40 RNU6-708P-201ENST00000384217 107 ntBASIC3.22□□□□□ -1.89
CCDC144BQ3MJ40 SNORA67.2-201ENST00000384300 149 ntBASIC3.22□□□□□ -1.89
CCDC144BQ3MJ40 Y_RNA.471-201ENST00000384312 102 ntBASIC3.22□□□□□ -1.89
CCDC144BQ3MJ40 Y_RNA.498-201ENST00000384460 102 ntBASIC3.22□□□□□ -1.89
CCDC144BQ3MJ40 RNU6-738P-201ENST00000384531 106 ntBASIC3.22□□□□□ -1.89
CCDC144BQ3MJ40 Y_RNA.527-201ENST00000384573 102 ntBASIC3.22□□□□□ -1.89
CCDC144BQ3MJ40 MIR592-201ENST00000384959 97 ntBASIC3.22□□□□□ -1.89
CCDC144BQ3MJ40 RNU4ATAC16P-201ENST00000408512 126 ntBASIC3.22□□□□□ -1.89
CCDC144BQ3MJ40 AC010469.2-201ENST00000496412 480 ntBASIC3.22□□□□□ -1.89
CCDC144BQ3MJ40 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC3.22□□□□□ -1.89
CCDC144BQ3MJ40 AC093259.1-201ENST00000509755 300 ntBASIC3.22□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 109.8 ms