Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC2.28□□□□□ -2.04
COL28A1Q2UY09 SNRPGP17-201ENST00000603780 214 ntBASIC2.28□□□□□ -2.04
COL28A1Q2UY09 SNRPGP20-201ENST00000604477 205 ntBASIC2.28□□□□□ -2.04
COL28A1Q2UY09 AL133255.1-201ENST00000606374 441 ntBASIC2.28□□□□□ -2.04
COL28A1Q2UY09 AC084781.2-201ENST00000615568 161 ntBASIC2.28□□□□□ -2.04
COL28A1Q2UY09 MPP6-209ENST00000625307 126 ntTSL 5 BASIC2.28□□□□□ -2.04
COL28A1Q2UY09 MIR1248-201ENST00000629190 106 ntBASIC2.28□□□□□ -2.04
COL28A1Q2UY09 AC073544.1-201ENST00000600110 1595 ntBASIC2.27□□□□□ -2.05
COL28A1Q2UY09 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
COL28A1Q2UY09 RNU6-490P-201ENST00000362985 107 ntBASIC2.27□□□□□ -2.05
COL28A1Q2UY09 RNU1-52P-201ENST00000384190 164 ntBASIC2.27□□□□□ -2.05
COL28A1Q2UY09 RNU6-159P-201ENST00000391080 106 ntBASIC2.27□□□□□ -2.05
COL28A1Q2UY09 RNU1-139P-201ENST00000391307 165 ntBASIC2.27□□□□□ -2.05
COL28A1Q2UY09 AL357139.1-201ENST00000407792 426 ntBASIC2.27□□□□□ -2.05
COL28A1Q2UY09 RNU6-1304P-201ENST00000411374 106 ntBASIC2.27□□□□□ -2.05
COL28A1Q2UY09 AC007098.1-201ENST00000420122 367 ntBASIC2.27□□□□□ -2.05
COL28A1Q2UY09 MTND4P28-201ENST00000426217 387 ntBASIC2.27□□□□□ -2.05
COL28A1Q2UY09 AC022493.2-201ENST00000506122 481 ntBASIC2.27□□□□□ -2.05
COL28A1Q2UY09 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.27□□□□□ -2.05
COL28A1Q2UY09 RNU6-965P-201ENST00000516721 96 ntBASIC2.27□□□□□ -2.05
COL28A1Q2UY09 RNA5SP137-201ENST00000516833 135 ntBASIC2.27□□□□□ -2.05
COL28A1Q2UY09 DEFB131C-201ENST00000528817 165 ntBASIC2.27□□□□□ -2.05
COL28A1Q2UY09 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC2.27□□□□□ -2.05
COL28A1Q2UY09 AC004584.2-201ENST00000570407 410 ntBASIC2.27□□□□□ -2.05
COL28A1Q2UY09 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC2.27□□□□□ -2.05
COL28A1Q2UY09 AL355802.3-201ENST00000607571 545 ntBASIC2.27□□□□□ -2.05
COL28A1Q2UY09 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC2.27□□□□□ -2.05
COL28A1Q2UY09 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
COL28A1Q2UY09 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.26□□□□□ -2.05
COL28A1Q2UY09 Y_RNA.146-201ENST00000363549 102 ntBASIC2.26□□□□□ -2.05
COL28A1Q2UY09 RNA5SP456-201ENST00000364002 114 ntBASIC2.26□□□□□ -2.05
COL28A1Q2UY09 MIR559-201ENST00000385188 96 ntBASIC2.26□□□□□ -2.05
COL28A1Q2UY09 AC108667.1-201ENST00000428618 249 ntBASIC2.26□□□□□ -2.05
COL28A1Q2UY09 AC107032.1-201ENST00000485945 480 ntBASIC2.26□□□□□ -2.05
COL28A1Q2UY09 RPS23P5-201ENST00000495419 428 ntBASIC2.26□□□□□ -2.05
COL28A1Q2UY09 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC2.26□□□□□ -2.05
COL28A1Q2UY09 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC2.26□□□□□ -2.05
COL28A1Q2UY09 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.26□□□□□ -2.05
COL28A1Q2UY09 RNU6-1114P-201ENST00000516022 107 ntBASIC2.26□□□□□ -2.05
COL28A1Q2UY09 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC2.26□□□□□ -2.05
COL28A1Q2UY09 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC2.26□□□□□ -2.05
COL28A1Q2UY09 AC103810.6-201ENST00000606708 136 ntBASIC2.26□□□□□ -2.05
COL28A1Q2UY09 MIR8070-201ENST00000616510 88 ntBASIC2.26□□□□□ -2.05
COL28A1Q2UY09 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC2.26□□□□□ -2.05
COL28A1Q2UY09 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.26□□□□□ -2.05
COL28A1Q2UY09 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
COL28A1Q2UY09 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.25□□□□□ -2.05
COL28A1Q2UY09 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
COL28A1Q2UY09 Y_RNA.116-201ENST00000363292 103 ntBASIC2.25□□□□□ -2.05
COL28A1Q2UY09 RNU6-280P-201ENST00000364145 104 ntBASIC2.25□□□□□ -2.05
COL28A1Q2UY09 Y_RNA.364-201ENST00000365532 101 ntBASIC2.25□□□□□ -2.05
COL28A1Q2UY09 SNORA18.2-201ENST00000383865 132 ntBASIC2.25□□□□□ -2.05
COL28A1Q2UY09 RNU6-541P-201ENST00000384709 110 ntBASIC2.25□□□□□ -2.05
COL28A1Q2UY09 MIR487A-201ENST00000385009 80 ntBASIC2.25□□□□□ -2.05
COL28A1Q2UY09 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC2.25□□□□□ -2.05
COL28A1Q2UY09 EDDM3CP-201ENST00000415977 425 ntBASIC2.25□□□□□ -2.05
COL28A1Q2UY09 AC027124.2-201ENST00000428249 105 ntBASIC2.25□□□□□ -2.05
COL28A1Q2UY09 MTND3P23-201ENST00000431980 347 ntBASIC2.25□□□□□ -2.05
COL28A1Q2UY09 AC009237.7-201ENST00000447357 229 ntBASIC2.25□□□□□ -2.05
COL28A1Q2UY09 PRELID3BP1-201ENST00000457142 540 ntBASIC2.25□□□□□ -2.05
COL28A1Q2UY09 TOMM22P6-201ENST00000465035 409 ntBASIC2.25□□□□□ -2.05
COL28A1Q2UY09 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC2.25□□□□□ -2.05
COL28A1Q2UY09 RNU6-1098P-201ENST00000516772 96 ntBASIC2.25□□□□□ -2.05
COL28A1Q2UY09 RNU1-104P-201ENST00000517280 175 ntBASIC2.25□□□□□ -2.05
COL28A1Q2UY09 AC026271.5-201ENST00000577873 130 ntBASIC2.25□□□□□ -2.05
COL28A1Q2UY09 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC2.25□□□□□ -2.05
COL28A1Q2UY09 AC080078.3-201ENST00000605407 463 ntBASIC2.25□□□□□ -2.05
COL28A1Q2UY09 snoU13.31-201ENST00000607291 104 ntBASIC2.25□□□□□ -2.05
COL28A1Q2UY09 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
COL28A1Q2UY09 AC005336.3-201ENST00000623833 2679 ntBASIC2.24□□□□□ -2.05
COL28A1Q2UY09 RNU6-99P-201ENST00000364721 107 ntBASIC2.24□□□□□ -2.05
COL28A1Q2UY09 Y_RNA.535-201ENST00000384612 99 ntBASIC2.24□□□□□ -2.05
COL28A1Q2UY09 SNORA26.9-201ENST00000391322 122 ntBASIC2.24□□□□□ -2.05
COL28A1Q2UY09 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC2.24□□□□□ -2.05
COL28A1Q2UY09 AC099799.1-201ENST00000439809 192 ntBASIC2.24□□□□□ -2.05
COL28A1Q2UY09 AC004386.2-201ENST00000441858 148 ntBASIC2.24□□□□□ -2.05
COL28A1Q2UY09 AC007677.1-201ENST00000445757 515 ntBASIC2.24□□□□□ -2.05
COL28A1Q2UY09 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC2.24□□□□□ -2.05
COL28A1Q2UY09 HMGN2P18-201ENST00000450680 270 ntBASIC2.24□□□□□ -2.05
COL28A1Q2UY09 snoU13.18-201ENST00000459483 104 ntBASIC2.24□□□□□ -2.05
COL28A1Q2UY09 AP000870.1-201ENST00000472927 406 ntBASIC2.24□□□□□ -2.05
COL28A1Q2UY09 AC093259.1-201ENST00000509755 300 ntBASIC2.24□□□□□ -2.05
COL28A1Q2UY09 SNORA4.4-201ENST00000515921 135 ntBASIC2.24□□□□□ -2.05
COL28A1Q2UY09 MIR449C-201ENST00000516047 92 ntBASIC2.24□□□□□ -2.05
COL28A1Q2UY09 RNU5F-4P-201ENST00000516581 114 ntBASIC2.24□□□□□ -2.05
COL28A1Q2UY09 RNU6-344P-201ENST00000516635 111 ntBASIC2.24□□□□□ -2.05
COL28A1Q2UY09 RNU2-44P-201ENST00000516795 194 ntBASIC2.24□□□□□ -2.05
COL28A1Q2UY09 AC233702.2-202ENST00000562547 291 ntBASIC2.24□□□□□ -2.05
COL28A1Q2UY09 AC090617.3-201ENST00000573670 475 ntBASIC2.24□□□□□ -2.05
COL28A1Q2UY09 MIR3126-201ENST00000577443 74 ntBASIC2.24□□□□□ -2.05
COL28A1Q2UY09 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC2.24□□□□□ -2.05
COL28A1Q2UY09 AL050343.2-201ENST00000607338 280 ntBASIC2.24□□□□□ -2.05
COL28A1Q2UY09 MIR6895-201ENST00000613497 78 ntBASIC2.24□□□□□ -2.05
COL28A1Q2UY09 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
COL28A1Q2UY09 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
COL28A1Q2UY09 ZNF204P-201ENST00000416749 2397 ntBASIC2.24□□□□□ -2.05
COL28A1Q2UY09 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
COL28A1Q2UY09 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.24□□□□□ -2.05
COL28A1Q2UY09 RNU6-874P-201ENST00000362390 105 ntBASIC2.23□□□□□ -2.05
COL28A1Q2UY09 RNU6-1115P-201ENST00000362490 106 ntBASIC2.23□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms