Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 MIR208B-201ENST00000401172 77 ntBASIC3.32□□□□□ -1.88
NKX3-2P78367 RNU6-1199P-201ENST00000411249 104 ntBASIC3.32□□□□□ -1.88
NKX3-2P78367 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC3.32□□□□□ -1.88
NKX3-2P78367 RAB28P5-201ENST00000427490 651 ntBASIC3.32□□□□□ -1.88
NKX3-2P78367 AC010401.1-201ENST00000463867 348 ntBASIC3.32□□□□□ -1.88
NKX3-2P78367 RPL30P14-201ENST00000482744 348 ntBASIC3.32□□□□□ -1.88
NKX3-2P78367 AC092185.1-201ENST00000491371 97 ntBASIC3.32□□□□□ -1.88
NKX3-2P78367 AC074133.1-201ENST00000515696 183 ntBASIC3.32□□□□□ -1.88
NKX3-2P78367 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.32□□□□□ -1.88
NKX3-2P78367 SNORD59.2-201ENST00000516873 68 ntBASIC3.32□□□□□ -1.88
NKX3-2P78367 AC115990.1-201ENST00000526957 301 ntBASIC3.32□□□□□ -1.88
NKX3-2P78367 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC3.32□□□□□ -1.88
NKX3-2P78367 TEX41-243ENST00000614173 190 ntTSL 5 BASIC3.32□□□□□ -1.88
NKX3-2P78367 AC091932.3-201ENST00000624223 323 ntBASIC3.32□□□□□ -1.88
NKX3-2P78367 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC3.32□□□□□ -1.88
NKX3-2P78367 AC099654.7-201ENST00000635788 2127 ntBASIC3.32□□□□□ -1.88
NKX3-2P78367 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.32□□□□□ -1.88
NKX3-2P78367 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
NKX3-2P78367 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC3.31□□□□□ -1.88
NKX3-2P78367 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC3.31□□□□□ -1.88
NKX3-2P78367 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.31□□□□□ -1.88
NKX3-2P78367 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
NKX3-2P78367 RNU4-80P-201ENST00000363200 141 ntBASIC3.31□□□□□ -1.88
NKX3-2P78367 Y_RNA.217-201ENST00000364214 105 ntBASIC3.31□□□□□ -1.88
NKX3-2P78367 Y_RNA.308-201ENST00000365043 101 ntBASIC3.31□□□□□ -1.88
NKX3-2P78367 RNU6-19P-201ENST00000384718 107 ntBASIC3.31□□□□□ -1.88
NKX3-2P78367 CBX3P9-201ENST00000402326 552 ntBASIC3.31□□□□□ -1.88
NKX3-2P78367 PTGES3P4-201ENST00000426243 356 ntBASIC3.31□□□□□ -1.88
NKX3-2P78367 AC063976.3-201ENST00000426849 329 ntBASIC3.31□□□□□ -1.88
NKX3-2P78367 Y_RNA.641-201ENST00000459414 105 ntBASIC3.31□□□□□ -1.88
NKX3-2P78367 AC107626.1-201ENST00000471084 183 ntBASIC3.31□□□□□ -1.88
NKX3-2P78367 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.31□□□□□ -1.88
NKX3-2P78367 RN7SL442P-201ENST00000473804 320 ntBASIC3.31□□□□□ -1.88
NKX3-2P78367 AC103975.1-201ENST00000482506 483 ntBASIC3.31□□□□□ -1.88
NKX3-2P78367 RNU6-1278P-201ENST00000516130 107 ntBASIC3.31□□□□□ -1.88
NKX3-2P78367 AP000867.2-201ENST00000532468 320 ntBASIC3.31□□□□□ -1.88
NKX3-2P78367 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC3.31□□□□□ -1.88
NKX3-2P78367 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC3.31□□□□□ -1.88
NKX3-2P78367 AC002076.2-201ENST00000617362 122 ntBASIC3.31□□□□□ -1.88
NKX3-2P78367 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.31□□□□□ -1.88
NKX3-2P78367 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.31□□□□□ -1.88
NKX3-2P78367 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.31□□□□□ -1.88
NKX3-2P78367 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC3.31□□□□□ -1.88
NKX3-2P78367 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
NKX3-2P78367 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
NKX3-2P78367 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
NKX3-2P78367 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.3□□□□□ -1.88
NKX3-2P78367 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC3.3□□□□□ -1.88
NKX3-2P78367 Y_RNA.170-201ENST00000363746 110 ntBASIC3.3□□□□□ -1.88
NKX3-2P78367 Y_RNA.233-201ENST00000364407 101 ntBASIC3.3□□□□□ -1.88
NKX3-2P78367 AP002088.1-201ENST00000382740 395 ntBASIC3.3□□□□□ -1.88
NKX3-2P78367 SNORA18.3-201ENST00000384122 132 ntBASIC3.3□□□□□ -1.88
NKX3-2P78367 Y_RNA.597-201ENST00000410463 100 ntBASIC3.3□□□□□ -1.88
NKX3-2P78367 RNA5SP293-201ENST00000410527 113 ntBASIC3.3□□□□□ -1.88
NKX3-2P78367 AC022018.1-201ENST00000430685 241 ntBASIC3.3□□□□□ -1.88
NKX3-2P78367 IFNA11P-201ENST00000446352 526 ntBASIC3.3□□□□□ -1.88
NKX3-2P78367 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC3.3□□□□□ -1.88
NKX3-2P78367 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC3.3□□□□□ -1.88
NKX3-2P78367 RPS27P29-201ENST00000463110 252 ntBASIC3.3□□□□□ -1.88
NKX3-2P78367 AL121594.1-201ENST00000475906 575 ntBASIC3.3□□□□□ -1.88
NKX3-2P78367 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC3.3□□□□□ -1.88
NKX3-2P78367 Y_RNA.662-201ENST00000516028 97 ntBASIC3.3□□□□□ -1.88
NKX3-2P78367 RNU6-191P-201ENST00000516295 94 ntBASIC3.3□□□□□ -1.88
NKX3-2P78367 CYCSP23-201ENST00000519781 313 ntBASIC3.3□□□□□ -1.88
NKX3-2P78367 MIR4308-201ENST00000580634 81 ntBASIC3.3□□□□□ -1.88
NKX3-2P78367 MIR3136-201ENST00000583498 78 ntBASIC3.3□□□□□ -1.88
NKX3-2P78367 AC005520.5-201ENST00000613926 164 ntBASIC3.3□□□□□ -1.88
NKX3-2P78367 AC068831.7-201ENST00000616954 363 ntBASIC3.3□□□□□ -1.88
NKX3-2P78367 AC073349.3-201ENST00000617616 186 ntBASIC3.3□□□□□ -1.88
NKX3-2P78367 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC3.3□□□□□ -1.88
NKX3-2P78367 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
NKX3-2P78367 PWAR6-201ENST00000552334 4618 ntBASIC3.3□□□□□ -1.88
NKX3-2P78367 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.3□□□□□ -1.88
NKX3-2P78367 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.29□□□□□ -1.88
NKX3-2P78367 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
NKX3-2P78367 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.29□□□□□ -1.88
NKX3-2P78367 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
NKX3-2P78367 AC092593.1-201ENST00000515413 1815 ntBASIC3.29□□□□□ -1.88
NKX3-2P78367 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.29□□□□□ -1.88
NKX3-2P78367 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
NKX3-2P78367 RNU5F-3P-201ENST00000363767 117 ntBASIC3.29□□□□□ -1.88
NKX3-2P78367 RNU6-805P-201ENST00000365643 106 ntBASIC3.29□□□□□ -1.88
NKX3-2P78367 RNU6-245P-201ENST00000384020 107 ntBASIC3.29□□□□□ -1.88
NKX3-2P78367 RNU6-198P-201ENST00000384258 104 ntBASIC3.29□□□□□ -1.88
NKX3-2P78367 CYCSP48-201ENST00000417124 323 ntBASIC3.29□□□□□ -1.88
NKX3-2P78367 AC024067.1-201ENST00000426199 223 ntBASIC3.29□□□□□ -1.88
NKX3-2P78367 AP001324.2-201ENST00000461163 319 ntBASIC3.29□□□□□ -1.88
NKX3-2P78367 RN7SL20P-201ENST00000488827 297 ntBASIC3.29□□□□□ -1.88
NKX3-2P78367 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC3.29□□□□□ -1.88
NKX3-2P78367 SCGB1D5P-201ENST00000515134 247 ntBASIC3.29□□□□□ -1.88
NKX3-2P78367 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
NKX3-2P78367 AC105137.2-201ENST00000569073 466 ntBASIC3.29□□□□□ -1.88
NKX3-2P78367 RPS15AP11-201ENST00000594193 385 ntBASIC3.29□□□□□ -1.88
NKX3-2P78367 AL034555.1-201ENST00000604816 211 ntBASIC3.29□□□□□ -1.88
NKX3-2P78367 AC007318.2-201ENST00000620999 243 ntBASIC3.29□□□□□ -1.88
NKX3-2P78367 snoU18.1-201ENST00000629629 71 ntBASIC3.29□□□□□ -1.88
NKX3-2P78367 U6.106-201ENST00000636360 105 ntBASIC3.29□□□□□ -1.88
NKX3-2P78367 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
NKX3-2P78367 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
NKX3-2P78367 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 117.5 ms