Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC0.2□□□□□ -2.38
NUP98P52948 AL390123.1-201ENST00000603216 237 ntBASIC0.2□□□□□ -2.38
NUP98P52948 AL138726.1-201ENST00000614873 333 ntBASIC0.2□□□□□ -2.38
NUP98P52948 RNA5SP504-201ENST00000410676 117 ntBASIC0.19□□□□□ -2.38
NUP98P52948 USP9YP28-201ENST00000435142 589 ntBASIC0.19□□□□□ -2.38
NUP98P52948 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC0.19□□□□□ -2.38
NUP98P52948 RNA5SP134-201ENST00000516492 96 ntBASIC0.19□□□□□ -2.38
NUP98P52948 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC0.19□□□□□ -2.38
NUP98P52948 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC0.19□□□□□ -2.38
NUP98P52948 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC0.19□□□□□ -2.38
NUP98P52948 MIR5190-201ENST00000581537 80 ntBASIC0.19□□□□□ -2.38
NUP98P52948 MIR5006-201ENST00000583027 110 ntBASIC0.19□□□□□ -2.38
NUP98P52948 AC087588.2-201ENST00000617667 426 ntBASIC0.19□□□□□ -2.38
NUP98P52948 7SK.10-201ENST00000621414 298 ntBASIC0.19□□□□□ -2.38
NUP98P52948 AL603839.4-201ENST00000624658 1005 ntBASIC0.19□□□□□ -2.38
NUP98P52948 AL359697.1-201ENST00000624879 587 ntBASIC0.19□□□□□ -2.38
NUP98P52948 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.18□□□□□ -2.38
NUP98P52948 AC244098.3-201ENST00000424803 96 ntBASIC0.18□□□□□ -2.38
NUP98P52948 HMGN2P34-201ENST00000437647 269 ntBASIC0.18□□□□□ -2.38
NUP98P52948 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC0.18□□□□□ -2.38
NUP98P52948 AL391840.1-201ENST00000571144 367 ntBASIC0.18□□□□□ -2.38
NUP98P52948 MIR4305-201ENST00000583252 102 ntBASIC0.18□□□□□ -2.38
NUP98P52948 AL450472.1-202ENST00000637286 180 ntBASIC0.18□□□□□ -2.38
NUP98P52948 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC0.18□□□□□ -2.38
NUP98P52948 RNU6-1327P-201ENST00000365302 105 ntBASIC0.17□□□□□ -2.38
NUP98P52948 RNU6-116P-201ENST00000384042 109 ntBASIC0.17□□□□□ -2.38
NUP98P52948 SNORA24.1-201ENST00000384401 135 ntBASIC0.17□□□□□ -2.38
NUP98P52948 RNA5SP25-201ENST00000410815 110 ntBASIC0.17□□□□□ -2.38
NUP98P52948 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC0.17□□□□□ -2.38
NUP98P52948 RPS24P1-201ENST00000438550 371 ntBASIC0.17□□□□□ -2.38
NUP98P52948 ZNF736P1Y-201ENST00000440402 1276 ntBASIC0.17□□□□□ -2.38
NUP98P52948 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC0.17□□□□□ -2.38
NUP98P52948 MTCO2P7-201ENST00000446518 666 ntBASIC0.17□□□□□ -2.38
NUP98P52948 RBBP4P6-201ENST00000508098 202 ntBASIC0.17□□□□□ -2.38
NUP98P52948 AC116347.2-201ENST00000514912 523 ntBASIC0.17□□□□□ -2.38
NUP98P52948 RNU6-276P-201ENST00000516114 96 ntBASIC0.17□□□□□ -2.38
NUP98P52948 AL021368.1-201ENST00000607490 540 ntBASIC0.17□□□□□ -2.38
NUP98P52948 ANKRD30BP1-201ENST00000451052 2186 ntBASIC0.17□□□□□ -2.38
NUP98P52948 RNU6-552P-201ENST00000362869 119 ntBASIC0.17□□□□□ -2.38
NUP98P52948 Y_RNA.110-201ENST00000363220 99 ntBASIC0.17□□□□□ -2.38
NUP98P52948 RNU4-1-201ENST00000363925 141 ntBASIC0.17□□□□□ -2.38
NUP98P52948 RNU4-76P-201ENST00000364509 141 ntBASIC0.17□□□□□ -2.38
NUP98P52948 RNU6-641P-201ENST00000384006 107 ntBASIC0.17□□□□□ -2.38
NUP98P52948 RNU6-163P-201ENST00000384396 106 ntBASIC0.17□□□□□ -2.38
NUP98P52948 MRPL42P2-201ENST00000403169 426 ntBASIC0.17□□□□□ -2.38
NUP98P52948 RNU2-72P-201ENST00000411175 163 ntBASIC0.17□□□□□ -2.38
NUP98P52948 MTCO2P21-201ENST00000419780 677 ntBASIC0.17□□□□□ -2.38
NUP98P52948 AC007283.2-201ENST00000424739 197 ntBASIC0.17□□□□□ -2.38
NUP98P52948 SCARNA1-201ENST00000517138 166 ntBASIC0.17□□□□□ -2.38
NUP98P52948 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC0.17□□□□□ -2.38
NUP98P52948 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.17□□□□□ -2.38
NUP98P52948 SEPT14P17-201ENST00000617978 177 ntBASIC0.17□□□□□ -2.38
NUP98P52948 AL157786.1-207ENST00000627771 695 ntBASIC0.17□□□□□ -2.38
NUP98P52948 RNU1-76P-201ENST00000362903 159 ntBASIC0.16□□□□□ -2.38
NUP98P52948 RNU6-433P-201ENST00000363216 104 ntBASIC0.16□□□□□ -2.38
NUP98P52948 AL022718.1-201ENST00000412004 84 ntBASIC0.16□□□□□ -2.38
NUP98P52948 MTATP6P20-201ENST00000414147 562 ntBASIC0.16□□□□□ -2.38
NUP98P52948 AC245047.3-201ENST00000429428 127 ntBASIC0.16□□□□□ -2.38
NUP98P52948 EEF1A1P39-201ENST00000440791 250 ntBASIC0.16□□□□□ -2.38
NUP98P52948 AC093019.1-201ENST00000443135 252 ntBASIC0.16□□□□□ -2.38
NUP98P52948 AC016717.1-201ENST00000448918 286 ntBASIC0.16□□□□□ -2.38
NUP98P52948 MTCO2P29-201ENST00000465212 189 ntBASIC0.16□□□□□ -2.38
NUP98P52948 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC0.16□□□□□ -2.38
NUP98P52948 AC022493.2-201ENST00000506122 481 ntBASIC0.16□□□□□ -2.38
NUP98P52948 AC079140.5-201ENST00000507882 310 ntBASIC0.16□□□□□ -2.38
NUP98P52948 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC0.16□□□□□ -2.38
NUP98P52948 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC0.16□□□□□ -2.38
NUP98P52948 RNU4-77P-201ENST00000516692 156 ntBASIC0.16□□□□□ -2.38
NUP98P52948 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC0.16□□□□□ -2.38
NUP98P52948 AC022217.4-201ENST00000604389 163 ntBASIC0.16□□□□□ -2.38
NUP98P52948 AC064872.1-201ENST00000604823 1072 ntBASIC0.16□□□□□ -2.38
NUP98P52948 PART1_2.1-201ENST00000612397 250 ntBASIC0.16□□□□□ -2.38
NUP98P52948 AP000484.1-201ENST00000620067 1252 ntBASIC0.16□□□□□ -2.38
NUP98P52948 Y_RNA.167-201ENST00000363735 109 ntBASIC0.15□□□□□ -2.38
NUP98P52948 RNU6-1240P-201ENST00000365155 104 ntBASIC0.15□□□□□ -2.38
NUP98P52948 RNU6-945P-201ENST00000383947 107 ntBASIC0.15□□□□□ -2.38
NUP98P52948 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC0.15□□□□□ -2.38
NUP98P52948 MTND3P1-201ENST00000441336 220 ntBASIC0.15□□□□□ -2.38
NUP98P52948 EXOSC3P1-201ENST00000448649 500 ntBASIC0.15□□□□□ -2.38
NUP98P52948 AC025465.4-201ENST00000513422 638 ntBASIC0.15□□□□□ -2.38
NUP98P52948 EIF1P4-201ENST00000572664 335 ntBASIC0.15□□□□□ -2.38
NUP98P52948 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC0.15□□□□□ -2.38
NUP98P52948 AC080078.2-201ENST00000603766 501 ntBASIC0.15□□□□□ -2.38
NUP98P52948 uc_338.22-201ENST00000622722 187 ntBASIC0.15□□□□□ -2.38
NUP98P52948 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.15□□□□□ -2.39
NUP98P52948 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC0.15□□□□□ -2.39
NUP98P52948 Y_RNA.330-201ENST00000365230 109 ntBASIC0.15□□□□□ -2.39
NUP98P52948 RNU6-45P-201ENST00000384471 107 ntBASIC0.15□□□□□ -2.39
NUP98P52948 MIR660-201ENST00000385235 97 ntBASIC0.15□□□□□ -2.39
NUP98P52948 RNU6-1106P-201ENST00000390845 107 ntBASIC0.15□□□□□ -2.39
NUP98P52948 RNA5SP109-201ENST00000391010 116 ntBASIC0.15□□□□□ -2.39
NUP98P52948 ELOCP4-201ENST00000420090 333 ntBASIC0.15□□□□□ -2.39
NUP98P52948 AC012306.1-201ENST00000423267 114 ntBASIC0.15□□□□□ -2.39
NUP98P52948 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC0.15□□□□□ -2.39
NUP98P52948 SNORA19.3-201ENST00000516165 130 ntBASIC0.15□□□□□ -2.39
NUP98P52948 MTND1P15-201ENST00000579262 949 ntBASIC0.15□□□□□ -2.39
NUP98P52948 AC097065.2-201ENST00000608159 533 ntBASIC0.15□□□□□ -2.39
NUP98P52948 AL359075.3-201ENST00000613288 217 ntBASIC0.15□□□□□ -2.39
NUP98P52948 AL627230.5-201ENST00000619807 58 ntBASIC0.15□□□□□ -2.39
NUP98P52948 MPP6-209ENST00000625307 126 ntTSL 5 BASIC0.15□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms