Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 RNU6-1098P-201ENST00000516772 96 ntBASIC2.13□□□□□ -2.07
HOXA1P49639 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.13□□□□□ -2.07
HOXA1P49639 AC131281.1-201ENST00000522984 164 ntBASIC2.13□□□□□ -2.07
HOXA1P49639 AC022080.3-201ENST00000544433 482 ntBASIC2.13□□□□□ -2.07
HOXA1P49639 RRN3P3-201ENST00000549207 578 ntBASIC2.13□□□□□ -2.07
HOXA1P49639 MIR5006-201ENST00000583027 110 ntBASIC2.13□□□□□ -2.07
HOXA1P49639 MIR4658-201ENST00000584344 65 ntBASIC2.13□□□□□ -2.07
HOXA1P49639 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.13□□□□□ -2.07
HOXA1P49639 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
HOXA1P49639 BX322639.1-202ENST00000423987 2213 ntBASIC2.13□□□□□ -2.07
HOXA1P49639 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.12□□□□□ -2.07
HOXA1P49639 RNU6-238P-201ENST00000363313 106 ntBASIC2.12□□□□□ -2.07
HOXA1P49639 SNORD87-201ENST00000364849 89 ntBASIC2.12□□□□□ -2.07
HOXA1P49639 RNU6-806P-201ENST00000365147 105 ntBASIC2.12□□□□□ -2.07
HOXA1P49639 Y_RNA.471-201ENST00000384312 102 ntBASIC2.12□□□□□ -2.07
HOXA1P49639 RNU6-1072P-201ENST00000384703 107 ntBASIC2.12□□□□□ -2.07
HOXA1P49639 RNU6-1105P-201ENST00000384774 107 ntBASIC2.12□□□□□ -2.07
HOXA1P49639 RNU6-443P-201ENST00000384780 107 ntBASIC2.12□□□□□ -2.07
HOXA1P49639 MIR329-1-201ENST00000385028 80 ntBASIC2.12□□□□□ -2.07
HOXA1P49639 MIR29B2-201ENST00000385055 81 ntBASIC2.12□□□□□ -2.07
HOXA1P49639 AL355497.1-201ENST00000406262 551 ntBASIC2.12□□□□□ -2.07
HOXA1P49639 SNORD12B-201ENST00000410433 91 ntBASIC2.12□□□□□ -2.07
HOXA1P49639 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC2.12□□□□□ -2.07
HOXA1P49639 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC2.12□□□□□ -2.07
HOXA1P49639 RPEP5-201ENST00000441137 268 ntBASIC2.12□□□□□ -2.07
HOXA1P49639 IFNA11P-201ENST00000446352 526 ntBASIC2.12□□□□□ -2.07
HOXA1P49639 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC2.12□□□□□ -2.07
HOXA1P49639 RPS29P26-201ENST00000477483 171 ntBASIC2.12□□□□□ -2.07
HOXA1P49639 CKS1BP2-201ENST00000497342 240 ntBASIC2.12□□□□□ -2.07
HOXA1P49639 MIR514B-201ENST00000516774 80 ntBASIC2.12□□□□□ -2.07
HOXA1P49639 RNU2-44P-201ENST00000516795 194 ntBASIC2.12□□□□□ -2.07
HOXA1P49639 RNU1-117P-201ENST00000517041 158 ntBASIC2.12□□□□□ -2.07
HOXA1P49639 AC109329.2-201ENST00000519658 482 ntBASIC2.12□□□□□ -2.07
HOXA1P49639 MIR3616-201ENST00000584070 92 ntBASIC2.12□□□□□ -2.07
HOXA1P49639 RPS29P30-201ENST00000600975 111 ntBASIC2.12□□□□□ -2.07
HOXA1P49639 AL390123.1-201ENST00000603216 237 ntBASIC2.12□□□□□ -2.07
HOXA1P49639 DLEU2_2.2-201ENST00000615474 90 ntBASIC2.12□□□□□ -2.07
HOXA1P49639 AC005562.2-201ENST00000618264 111 ntBASIC2.12□□□□□ -2.07
HOXA1P49639 MIR1248-201ENST00000629190 106 ntBASIC2.12□□□□□ -2.07
HOXA1P49639 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.12□□□□□ -2.07
HOXA1P49639 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.12□□□□□ -2.07
HOXA1P49639 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC2.11□□□□□ -2.07
HOXA1P49639 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC2.11□□□□□ -2.07
HOXA1P49639 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
HOXA1P49639 Y_RNA.27-201ENST00000362540 103 ntBASIC2.11□□□□□ -2.07
HOXA1P49639 Y_RNA.105-201ENST00000363182 111 ntBASIC2.11□□□□□ -2.07
HOXA1P49639 Y_RNA.415-201ENST00000384012 112 ntBASIC2.11□□□□□ -2.07
HOXA1P49639 Y_RNA.458-201ENST00000384240 102 ntBASIC2.11□□□□□ -2.07
HOXA1P49639 RNU6-574P-201ENST00000384265 107 ntBASIC2.11□□□□□ -2.07
HOXA1P49639 RNY3P4-201ENST00000384428 101 ntBASIC2.11□□□□□ -2.07
HOXA1P49639 AL033519.2-201ENST00000403958 392 ntBASIC2.11□□□□□ -2.07
HOXA1P49639 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.11□□□□□ -2.07
HOXA1P49639 AC087499.2-201ENST00000432861 149 ntBASIC2.11□□□□□ -2.07
HOXA1P49639 AC104389.3-201ENST00000445629 235 ntBASIC2.11□□□□□ -2.07
HOXA1P49639 AC080013.2-201ENST00000460866 323 ntBASIC2.11□□□□□ -2.07
HOXA1P49639 MRPS35P2-201ENST00000508242 191 ntBASIC2.11□□□□□ -2.07
HOXA1P49639 ATP5EP1-201ENST00000510257 156 ntBASIC2.11□□□□□ -2.07
HOXA1P49639 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC2.11□□□□□ -2.07
HOXA1P49639 RNU6-911P-201ENST00000516523 104 ntBASIC2.11□□□□□ -2.07
HOXA1P49639 RNA5SP54-201ENST00000516951 92 ntBASIC2.11□□□□□ -2.07
HOXA1P49639 AC022616.4-201ENST00000522985 181 ntBASIC2.11□□□□□ -2.07
HOXA1P49639 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC2.11□□□□□ -2.07
HOXA1P49639 AC008269.2-201ENST00000561915 1105 ntBASIC2.11□□□□□ -2.07
HOXA1P49639 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.11□□□□□ -2.07
HOXA1P49639 MIR4659A-201ENST00000580269 81 ntBASIC2.11□□□□□ -2.07
HOXA1P49639 MIR5092-201ENST00000583139 88 ntBASIC2.11□□□□□ -2.07
HOXA1P49639 AC002984.1-201ENST00000591692 448 ntBASIC2.11□□□□□ -2.07
HOXA1P49639 AL162730.1-201ENST00000605734 292 ntBASIC2.11□□□□□ -2.07
HOXA1P49639 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC2.11□□□□□ -2.07
HOXA1P49639 AC010999.1-201ENST00000611856 324 ntBASIC2.11□□□□□ -2.07
HOXA1P49639 AL138825.1-201ENST00000618587 192 ntBASIC2.11□□□□□ -2.07
HOXA1P49639 MIR5739-201ENST00000619803 80 ntBASIC2.11□□□□□ -2.07
HOXA1P49639 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.11□□□□□ -2.07
HOXA1P49639 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.1□□□□□ -2.07
HOXA1P49639 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC2.1□□□□□ -2.07
HOXA1P49639 RNU6-961P-201ENST00000363893 105 ntBASIC2.1□□□□□ -2.07
HOXA1P49639 SNORA18.3-201ENST00000384122 132 ntBASIC2.1□□□□□ -2.07
HOXA1P49639 MIR491-201ENST00000384877 84 ntBASIC2.1□□□□□ -2.07
HOXA1P49639 AL079342.1-201ENST00000401460 267 ntBASIC2.1□□□□□ -2.07
HOXA1P49639 MIR548F4-201ENST00000408515 105 ntBASIC2.1□□□□□ -2.07
HOXA1P49639 MIR1252-201ENST00000408861 65 ntBASIC2.1□□□□□ -2.07
HOXA1P49639 RNA5SP504-201ENST00000410676 117 ntBASIC2.1□□□□□ -2.07
HOXA1P49639 RNA5SP21-201ENST00000410917 96 ntBASIC2.1□□□□□ -2.07
HOXA1P49639 RNU2-32P-201ENST00000411193 191 ntBASIC2.1□□□□□ -2.07
HOXA1P49639 MTCO3P19-201ENST00000415864 321 ntBASIC2.1□□□□□ -2.07
HOXA1P49639 ELOCP20-201ENST00000422460 345 ntBASIC2.1□□□□□ -2.07
HOXA1P49639 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC2.1□□□□□ -2.07
HOXA1P49639 AL358176.2-201ENST00000425769 204 ntBASIC2.1□□□□□ -2.07
HOXA1P49639 AL161788.1-201ENST00000441805 169 ntBASIC2.1□□□□□ -2.07
HOXA1P49639 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC2.1□□□□□ -2.07
HOXA1P49639 RPS27P21-201ENST00000486977 252 ntBASIC2.1□□□□□ -2.07
HOXA1P49639 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC2.1□□□□□ -2.07
HOXA1P49639 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC2.1□□□□□ -2.07
HOXA1P49639 RNU6-1012P-201ENST00000516606 109 ntBASIC2.1□□□□□ -2.07
HOXA1P49639 RNU6-635P-201ENST00000516651 102 ntBASIC2.1□□□□□ -2.07
HOXA1P49639 Y_RNA.721-201ENST00000517207 102 ntBASIC2.1□□□□□ -2.07
HOXA1P49639 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.1□□□□□ -2.07
HOXA1P49639 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.1□□□□□ -2.07
HOXA1P49639 AC074050.1-201ENST00000563247 211 ntBASIC2.1□□□□□ -2.07
HOXA1P49639 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC2.1□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 126.3 ms