Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 Y_RNA.471-201ENST00000384312 102 ntBASIC2.93□□□□□ -1.94
SMARCA1P28370 MIR329-1-201ENST00000385028 80 ntBASIC2.93□□□□□ -1.94
SMARCA1P28370 SNORA12-201ENST00000391162 147 ntBASIC2.93□□□□□ -1.94
SMARCA1P28370 ELOCP20-201ENST00000422460 345 ntBASIC2.93□□□□□ -1.94
SMARCA1P28370 RPEP5-201ENST00000441137 268 ntBASIC2.93□□□□□ -1.94
SMARCA1P28370 AC090515.1-201ENST00000465295 476 ntBASIC2.93□□□□□ -1.94
SMARCA1P28370 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.93□□□□□ -1.94
SMARCA1P28370 RNU6-1012P-201ENST00000516606 109 ntBASIC2.93□□□□□ -1.94
SMARCA1P28370 RNU6-635P-201ENST00000516651 102 ntBASIC2.93□□□□□ -1.94
SMARCA1P28370 AC109329.2-201ENST00000519658 482 ntBASIC2.93□□□□□ -1.94
SMARCA1P28370 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC2.93□□□□□ -1.94
SMARCA1P28370 AC093023.1-201ENST00000547375 507 ntBASIC2.93□□□□□ -1.94
SMARCA1P28370 AL713866.2-201ENST00000603579 219 ntBASIC2.93□□□□□ -1.94
SMARCA1P28370 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC2.93□□□□□ -1.94
SMARCA1P28370 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.93□□□□□ -1.94
SMARCA1P28370 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC2.93□□□□□ -1.94
SMARCA1P28370 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.93□□□□□ -1.94
SMARCA1P28370 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.93□□□□□ -1.94
SMARCA1P28370 AC016717.2-201ENST00000609089 5141 ntBASIC2.92□□□□□ -1.94
SMARCA1P28370 Y_RNA.144-201ENST00000363521 113 ntBASIC2.92□□□□□ -1.94
SMARCA1P28370 U3.9-201ENST00000363823 204 ntBASIC2.92□□□□□ -1.94
SMARCA1P28370 RNU6-1109P-201ENST00000391187 107 ntBASIC2.92□□□□□ -1.94
SMARCA1P28370 RPL21P1-201ENST00000399532 476 ntBASIC2.92□□□□□ -1.94
SMARCA1P28370 RN7SKP284-201ENST00000411002 343 ntBASIC2.92□□□□□ -1.94
SMARCA1P28370 RNU6-1001P-201ENST00000411265 100 ntBASIC2.92□□□□□ -1.94
SMARCA1P28370 AC073910.1-201ENST00000445047 438 ntBASIC2.92□□□□□ -1.94
SMARCA1P28370 FCF1P4-201ENST00000448326 183 ntBASIC2.92□□□□□ -1.94
SMARCA1P28370 MTCO2P24-201ENST00000515611 426 ntBASIC2.92□□□□□ -1.94
SMARCA1P28370 RNU6-397P-201ENST00000516226 104 ntBASIC2.92□□□□□ -1.94
SMARCA1P28370 RNA5SP320-201ENST00000516263 124 ntBASIC2.92□□□□□ -1.94
SMARCA1P28370 RNA5SP148-201ENST00000516527 94 ntBASIC2.92□□□□□ -1.94
SMARCA1P28370 DEFB131C-201ENST00000528817 165 ntBASIC2.92□□□□□ -1.94
SMARCA1P28370 AC004486.1-201ENST00000546846 233 ntBASIC2.92□□□□□ -1.94
SMARCA1P28370 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC2.92□□□□□ -1.94
SMARCA1P28370 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.92□□□□□ -1.94
SMARCA1P28370 AL121655.1-201ENST00000605811 308 ntBASIC2.92□□□□□ -1.94
SMARCA1P28370 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC2.92□□□□□ -1.94
SMARCA1P28370 TEX41-243ENST00000614173 190 ntTSL 5 BASIC2.92□□□□□ -1.94
SMARCA1P28370 AC011476.5-201ENST00000615594 130 ntBASIC2.92□□□□□ -1.94
SMARCA1P28370 AC240442.1-201ENST00000616055 283 ntBASIC2.92□□□□□ -1.94
SMARCA1P28370 TTK-211ENST00000627129 240 ntTSL 5 BASIC2.92□□□□□ -1.94
SMARCA1P28370 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.91□□□□□ -1.94
SMARCA1P28370 Y_RNA.47-201ENST00000362697 108 ntBASIC2.91□□□□□ -1.94
SMARCA1P28370 RNU6-238P-201ENST00000363313 106 ntBASIC2.91□□□□□ -1.94
SMARCA1P28370 RNU1-138P-201ENST00000384093 164 ntBASIC2.91□□□□□ -1.94
SMARCA1P28370 RNU6-1145P-201ENST00000384246 107 ntBASIC2.91□□□□□ -1.94
SMARCA1P28370 RNU6-574P-201ENST00000384265 107 ntBASIC2.91□□□□□ -1.94
SMARCA1P28370 Y_RNA.512-201ENST00000384518 102 ntBASIC2.91□□□□□ -1.94
SMARCA1P28370 SNORA67.4-201ENST00000384688 142 ntBASIC2.91□□□□□ -1.94
SMARCA1P28370 Y_RNA.574-201ENST00000384766 95 ntBASIC2.91□□□□□ -1.94
SMARCA1P28370 MIR518C-201ENST00000384822 101 ntBASIC2.91□□□□□ -1.94
SMARCA1P28370 SDAD1P3-201ENST00000427380 333 ntBASIC2.91□□□□□ -1.94
SMARCA1P28370 MTCYBP9-201ENST00000431021 303 ntBASIC2.91□□□□□ -1.94
SMARCA1P28370 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.91□□□□□ -1.94
SMARCA1P28370 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC2.91□□□□□ -1.94
SMARCA1P28370 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC2.91□□□□□ -1.94
SMARCA1P28370 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC2.91□□□□□ -1.94
SMARCA1P28370 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.91□□□□□ -1.94
SMARCA1P28370 SNORA25.14-201ENST00000516481 132 ntBASIC2.91□□□□□ -1.94
SMARCA1P28370 RNU6-897P-201ENST00000517135 105 ntBASIC2.91□□□□□ -1.94
SMARCA1P28370 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC2.91□□□□□ -1.94
SMARCA1P28370 PRR13P7-201ENST00000605538 430 ntBASIC2.91□□□□□ -1.94
SMARCA1P28370 MIR5739-201ENST00000619803 80 ntBASIC2.91□□□□□ -1.94
SMARCA1P28370 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.91□□□□□ -1.94
SMARCA1P28370 AC090517.3-201ENST00000625170 141 ntBASIC2.91□□□□□ -1.94
SMARCA1P28370 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.91□□□□□ -1.94
SMARCA1P28370 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.91□□□□□ -1.94
SMARCA1P28370 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.9□□□□□ -1.94
SMARCA1P28370 RNU6-280P-201ENST00000364145 104 ntBASIC2.9□□□□□ -1.95
SMARCA1P28370 SNORD32B-201ENST00000364460 84 ntBASIC2.9□□□□□ -1.95
SMARCA1P28370 RNU6-926P-201ENST00000384075 107 ntBASIC2.9□□□□□ -1.95
SMARCA1P28370 RNU6-1274P-201ENST00000384557 107 ntBASIC2.9□□□□□ -1.95
SMARCA1P28370 RNA5SP210-201ENST00000391034 120 ntBASIC2.9□□□□□ -1.95
SMARCA1P28370 AC004866.1-201ENST00000411748 78 ntBASIC2.9□□□□□ -1.95
SMARCA1P28370 AC003685.2-201ENST00000422795 395 ntBASIC2.9□□□□□ -1.95
SMARCA1P28370 AC027124.2-201ENST00000428249 105 ntBASIC2.9□□□□□ -1.95
SMARCA1P28370 AC010095.1-201ENST00000443543 144 ntBASIC2.9□□□□□ -1.95
SMARCA1P28370 SRIP1-201ENST00000489235 288 ntBASIC2.9□□□□□ -1.95
SMARCA1P28370 AC067942.3-201ENST00000512025 362 ntBASIC2.9□□□□□ -1.95
SMARCA1P28370 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.9□□□□□ -1.95
SMARCA1P28370 RN7SKP49-201ENST00000516675 260 ntBASIC2.9□□□□□ -1.95
SMARCA1P28370 HSPE1P18-201ENST00000517602 280 ntBASIC2.9□□□□□ -1.95
SMARCA1P28370 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.9□□□□□ -1.95
SMARCA1P28370 MIR4659A-201ENST00000580269 81 ntBASIC2.9□□□□□ -1.95
SMARCA1P28370 MIR3670-2-201ENST00000582974 65 ntBASIC2.9□□□□□ -1.95
SMARCA1P28370 MIR3670-1-201ENST00000584160 65 ntBASIC2.9□□□□□ -1.95
SMARCA1P28370 MIR3670-3-201ENST00000584855 65 ntBASIC2.9□□□□□ -1.95
SMARCA1P28370 AC104984.5-201ENST00000586878 94 ntBASIC2.9□□□□□ -1.95
SMARCA1P28370 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.9□□□□□ -1.95
SMARCA1P28370 MIR3670-4-201ENST00000612260 65 ntBASIC2.9□□□□□ -1.95
SMARCA1P28370 AC010205.1-201ENST00000616668 449 ntBASIC2.9□□□□□ -1.95
SMARCA1P28370 AC010297.1-201ENST00000623948 149 ntBASIC2.9□□□□□ -1.95
SMARCA1P28370 CTSLP2-204ENST00000629029 392 ntBASIC2.9□□□□□ -1.95
SMARCA1P28370 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC2.9□□□□□ -1.95
SMARCA1P28370 Y_RNA.26-201ENST00000362539 101 ntBASIC2.89□□□□□ -1.95
SMARCA1P28370 Y_RNA.149-201ENST00000363558 117 ntBASIC2.89□□□□□ -1.95
SMARCA1P28370 Y_RNA.152-201ENST00000363578 100 ntBASIC2.89□□□□□ -1.95
SMARCA1P28370 Y_RNA.176-201ENST00000363815 109 ntBASIC2.89□□□□□ -1.95
SMARCA1P28370 RNU6-806P-201ENST00000365147 105 ntBASIC2.89□□□□□ -1.95
SMARCA1P28370 SNORA18.2-201ENST00000383865 132 ntBASIC2.89□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 141 ms