Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC2.85□□□□□ -1.95
PROM1O43490 Y_RNA.40-201ENST00000362645 93 ntBASIC2.84□□□□□ -1.95
PROM1O43490 Y_RNA.179-201ENST00000363844 90 ntBASIC2.84□□□□□ -1.95
PROM1O43490 RNU6-961P-201ENST00000363893 105 ntBASIC2.84□□□□□ -1.95
PROM1O43490 SNORA71.1-201ENST00000364523 117 ntBASIC2.84□□□□□ -1.95
PROM1O43490 Y_RNA.286-201ENST00000364813 102 ntBASIC2.84□□□□□ -1.95
PROM1O43490 Y_RNA.539-201ENST00000384635 107 ntBASIC2.84□□□□□ -1.95
PROM1O43490 SNORA53-201ENST00000391141 249 ntBASIC2.84□□□□□ -1.95
PROM1O43490 CBX3P9-201ENST00000402326 552 ntBASIC2.84□□□□□ -1.95
PROM1O43490 MIR320B2-201ENST00000408479 138 ntBASIC2.84□□□□□ -1.95
PROM1O43490 CYCSP48-201ENST00000417124 323 ntBASIC2.84□□□□□ -1.95
PROM1O43490 AC107083.1-201ENST00000439643 279 ntBASIC2.84□□□□□ -1.95
PROM1O43490 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC2.84□□□□□ -1.95
PROM1O43490 HSPE1P25-201ENST00000455484 251 ntBASIC2.84□□□□□ -1.95
PROM1O43490 AC117440.1-201ENST00000474107 571 ntBASIC2.84□□□□□ -1.95
PROM1O43490 RPL26P26-201ENST00000480251 434 ntBASIC2.84□□□□□ -1.95
PROM1O43490 RPL23AP70-201ENST00000483361 460 ntBASIC2.84□□□□□ -1.95
PROM1O43490 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC2.84□□□□□ -1.95
PROM1O43490 RNU6ATAC13P-201ENST00000516152 131 ntBASIC2.84□□□□□ -1.95
PROM1O43490 Y_RNA.683-201ENST00000516508 93 ntBASIC2.84□□□□□ -1.95
PROM1O43490 RRN3P3-201ENST00000549207 578 ntBASIC2.84□□□□□ -1.95
PROM1O43490 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC2.84□□□□□ -1.95
PROM1O43490 AL391813.1-201ENST00000603098 260 ntBASIC2.84□□□□□ -1.95
PROM1O43490 AC037487.3-201ENST00000606668 112 ntBASIC2.84□□□□□ -1.95
PROM1O43490 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC2.84□□□□□ -1.96
PROM1O43490 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC2.84□□□□□ -1.96
PROM1O43490 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC2.83□□□□□ -1.96
PROM1O43490 MTND5P35-201ENST00000557537 1720 ntBASIC2.83□□□□□ -1.96
PROM1O43490 RNU6-1010P-201ENST00000362757 107 ntBASIC2.83□□□□□ -1.96
PROM1O43490 RNU1-109P-201ENST00000383960 147 ntBASIC2.83□□□□□ -1.96
PROM1O43490 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC2.83□□□□□ -1.96
PROM1O43490 UQCRBP2-201ENST00000447827 297 ntBASIC2.83□□□□□ -1.96
PROM1O43490 RN7SL499P-201ENST00000481141 276 ntBASIC2.83□□□□□ -1.96
PROM1O43490 RN7SL633P-201ENST00000488974 297 ntBASIC2.83□□□□□ -1.96
PROM1O43490 RPS23P5-201ENST00000495419 428 ntBASIC2.83□□□□□ -1.96
PROM1O43490 SERF1AP1-201ENST00000514575 187 ntBASIC2.83□□□□□ -1.96
PROM1O43490 RNU6-138P-201ENST00000515952 107 ntBASIC2.83□□□□□ -1.96
PROM1O43490 RPPH1-2P-201ENST00000516688 293 ntBASIC2.83□□□□□ -1.96
PROM1O43490 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC2.83□□□□□ -1.96
PROM1O43490 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC2.83□□□□□ -1.96
PROM1O43490 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC2.83□□□□□ -1.96
PROM1O43490 MZT1P2-201ENST00000604387 248 ntBASIC2.83□□□□□ -1.96
PROM1O43490 AL357075.2-201ENST00000614906 189 ntBASIC2.83□□□□□ -1.96
PROM1O43490 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC2.83□□□□□ -1.96
PROM1O43490 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.83□□□□□ -1.96
PROM1O43490 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
PROM1O43490 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.82□□□□□ -1.96
PROM1O43490 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.82□□□□□ -1.96
PROM1O43490 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
PROM1O43490 AL161431.1-201ENST00000618966 4205 ntBASIC2.82□□□□□ -1.96
PROM1O43490 AC135776.4-201ENST00000624300 1904 ntBASIC2.82□□□□□ -1.96
PROM1O43490 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.82□□□□□ -1.96
PROM1O43490 RNU6-727P-201ENST00000363592 107 ntBASIC2.82□□□□□ -1.96
PROM1O43490 RNU6-461P-201ENST00000364195 107 ntBASIC2.82□□□□□ -1.96
PROM1O43490 SNORA72.2-201ENST00000365028 127 ntBASIC2.82□□□□□ -1.96
PROM1O43490 RNU6-1175P-201ENST00000365200 107 ntBASIC2.82□□□□□ -1.96
PROM1O43490 RNU6-378P-201ENST00000384324 107 ntBASIC2.82□□□□□ -1.96
PROM1O43490 SNORA26.7-201ENST00000391288 122 ntBASIC2.82□□□□□ -1.96
PROM1O43490 SNORD88.1-201ENST00000408684 91 ntBASIC2.82□□□□□ -1.96
PROM1O43490 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC2.82□□□□□ -1.96
PROM1O43490 AC103975.1-201ENST00000482506 483 ntBASIC2.82□□□□□ -1.96
PROM1O43490 RPL36AP48-201ENST00000485521 314 ntBASIC2.82□□□□□ -1.96
PROM1O43490 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.82□□□□□ -1.96
PROM1O43490 AC005176.2-201ENST00000596933 147 ntBASIC2.82□□□□□ -1.96
PROM1O43490 BX284668.6-201ENST00000606899 438 ntBASIC2.82□□□□□ -1.96
PROM1O43490 U2.14-201ENST00000615943 113 ntBASIC2.82□□□□□ -1.96
PROM1O43490 AC006001.4-201ENST00000622243 395 ntBASIC2.82□□□□□ -1.96
PROM1O43490 AL355596.1-201ENST00000565399 3996 ntBASIC2.82□□□□□ -1.96
PROM1O43490 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.82□□□□□ -1.96
PROM1O43490 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC2.81□□□□□ -1.96
PROM1O43490 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
PROM1O43490 AC010329.5-201ENST00000623497 2174 ntBASIC2.81□□□□□ -1.96
PROM1O43490 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.81□□□□□ -1.96
PROM1O43490 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
PROM1O43490 MIR449A-201ENST00000362113 91 ntBASIC2.81□□□□□ -1.96
PROM1O43490 RNU6-200P-201ENST00000364743 107 ntBASIC2.81□□□□□ -1.96
PROM1O43490 RNU6-793P-201ENST00000384233 104 ntBASIC2.81□□□□□ -1.96
PROM1O43490 Y_RNA.569-201ENST00000384749 103 ntBASIC2.81□□□□□ -1.96
PROM1O43490 MIR186-201ENST00000384988 86 ntBASIC2.81□□□□□ -1.96
PROM1O43490 RPL19P1-201ENST00000411635 428 ntBASIC2.81□□□□□ -1.96
PROM1O43490 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.81□□□□□ -1.96
PROM1O43490 RNU6-625P-201ENST00000459412 107 ntBASIC2.81□□□□□ -1.96
PROM1O43490 AP004217.1-201ENST00000480579 346 ntBASIC2.81□□□□□ -1.96
PROM1O43490 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC2.81□□□□□ -1.96
PROM1O43490 RNA5SP76-201ENST00000516277 87 ntBASIC2.81□□□□□ -1.96
PROM1O43490 AK6P2-201ENST00000549020 471 ntBASIC2.81□□□□□ -1.96
PROM1O43490 AL109918.3-201ENST00000603072 338 ntBASIC2.81□□□□□ -1.96
PROM1O43490 SNRPGP20-201ENST00000604477 205 ntBASIC2.81□□□□□ -1.96
PROM1O43490 IGHVIII-44-202ENST00000636235 289 ntBASIC2.81□□□□□ -1.96
PROM1O43490 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
PROM1O43490 BX322639.1-202ENST00000423987 2213 ntBASIC2.81□□□□□ -1.96
PROM1O43490 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.81□□□□□ -1.96
PROM1O43490 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
PROM1O43490 SNORA25.1-201ENST00000362326 128 ntBASIC2.8□□□□□ -1.96
PROM1O43490 RNU6-655P-201ENST00000362858 107 ntBASIC2.8□□□□□ -1.96
PROM1O43490 Y_RNA.269-201ENST00000364685 89 ntBASIC2.8□□□□□ -1.96
PROM1O43490 RNU6-514P-201ENST00000384208 107 ntBASIC2.8□□□□□ -1.96
PROM1O43490 Y_RNA.498-201ENST00000384460 102 ntBASIC2.8□□□□□ -1.96
PROM1O43490 RNU6-851P-201ENST00000384565 107 ntBASIC2.8□□□□□ -1.96
PROM1O43490 Y_RNA.570-201ENST00000384750 101 ntBASIC2.8□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms