Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 RNU6-1264P-201ENST00000383891 107 ntBASIC3.09□□□□□ -1.91
CBX4O00257 Y_RNA.447-201ENST00000384184 113 ntBASIC3.09□□□□□ -1.91
CBX4O00257 SNORA53-201ENST00000391141 249 ntBASIC3.09□□□□□ -1.91
CBX4O00257 RNU4-30P-201ENST00000410245 143 ntBASIC3.09□□□□□ -1.91
CBX4O00257 RPL23AP36-201ENST00000413895 458 ntBASIC3.09□□□□□ -1.91
CBX4O00257 Z82209.1-201ENST00000422141 2135 ntBASIC3.09□□□□□ -1.91
CBX4O00257 ARL5AP4-201ENST00000430731 512 ntBASIC3.09□□□□□ -1.91
CBX4O00257 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.09□□□□□ -1.91
CBX4O00257 AL161788.1-201ENST00000441805 169 ntBASIC3.09□□□□□ -1.91
CBX4O00257 RN7SL429P-201ENST00000479090 223 ntBASIC3.09□□□□□ -1.91
CBX4O00257 RN7SL489P-201ENST00000486185 223 ntBASIC3.09□□□□□ -1.91
CBX4O00257 RN7SL327P-201ENST00000488659 223 ntBASIC3.09□□□□□ -1.91
CBX4O00257 RN7SL20P-201ENST00000488827 297 ntBASIC3.09□□□□□ -1.91
CBX4O00257 AC107222.1-201ENST00000510899 637 ntBASIC3.09□□□□□ -1.91
CBX4O00257 RNU6-1098P-201ENST00000516772 96 ntBASIC3.09□□□□□ -1.91
CBX4O00257 DEFB108E-201ENST00000524692 240 ntBASIC3.09□□□□□ -1.91
CBX4O00257 AC018630.3-201ENST00000542637 96 ntBASIC3.09□□□□□ -1.91
CBX4O00257 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.09□□□□□ -1.91
CBX4O00257 AC023043.3-201ENST00000593113 385 ntBASIC3.09□□□□□ -1.91
CBX4O00257 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC3.09□□□□□ -1.91
CBX4O00257 AC037487.3-201ENST00000606668 112 ntBASIC3.09□□□□□ -1.91
CBX4O00257 AP001282.2-201ENST00000616149 309 ntBASIC3.09□□□□□ -1.91
CBX4O00257 RN7SL853P-201ENST00000617250 223 ntBASIC3.09□□□□□ -1.91
CBX4O00257 AC006001.4-201ENST00000622243 395 ntBASIC3.09□□□□□ -1.91
CBX4O00257 MIR3674-201ENST00000636576 68 ntBASIC3.09□□□□□ -1.91
CBX4O00257 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.09□□□□□ -1.91
CBX4O00257 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.09□□□□□ -1.92
CBX4O00257 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.09□□□□□ -1.92
CBX4O00257 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC3.09□□□□□ -1.92
CBX4O00257 MIR449A-201ENST00000362113 91 ntBASIC3.08□□□□□ -1.92
CBX4O00257 MIR335-201ENST00000362173 94 ntBASIC3.08□□□□□ -1.92
CBX4O00257 RNU6-461P-201ENST00000364195 107 ntBASIC3.08□□□□□ -1.92
CBX4O00257 Y_RNA.237-201ENST00000364439 102 ntBASIC3.08□□□□□ -1.92
CBX4O00257 SNORD87-201ENST00000364849 89 ntBASIC3.08□□□□□ -1.92
CBX4O00257 RNU6-1026P-201ENST00000384465 108 ntBASIC3.08□□□□□ -1.92
CBX4O00257 RNU6-102P-201ENST00000384485 104 ntBASIC3.08□□□□□ -1.92
CBX4O00257 Y_RNA.541-201ENST00000384640 113 ntBASIC3.08□□□□□ -1.92
CBX4O00257 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
CBX4O00257 MIR548H3-201ENST00000408771 118 ntBASIC3.08□□□□□ -1.92
CBX4O00257 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC3.08□□□□□ -1.92
CBX4O00257 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.08□□□□□ -1.92
CBX4O00257 AC009969.1-201ENST00000438726 172 ntBASIC3.08□□□□□ -1.92
CBX4O00257 MIR449C-201ENST00000516047 92 ntBASIC3.08□□□□□ -1.92
CBX4O00257 RNU6-1338P-201ENST00000516328 91 ntBASIC3.08□□□□□ -1.92
CBX4O00257 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC3.08□□□□□ -1.92
CBX4O00257 RPL12P50-201ENST00000603116 116 ntBASIC3.08□□□□□ -1.92
CBX4O00257 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC3.08□□□□□ -1.92
CBX4O00257 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
CBX4O00257 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.08□□□□□ -1.92
CBX4O00257 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.08□□□□□ -1.92
CBX4O00257 AC009487.2-201ENST00000420969 6821 ntBASIC3.07□□□□□ -1.92
CBX4O00257 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
CBX4O00257 AC073325.2-201ENST00000339545 159 ntBASIC3.07□□□□□ -1.92
CBX4O00257 RNA5SP126-201ENST00000365092 109 ntBASIC3.07□□□□□ -1.92
CBX4O00257 RNU6-234P-201ENST00000365229 104 ntBASIC3.07□□□□□ -1.92
CBX4O00257 Y_RNA.331-201ENST00000365267 102 ntBASIC3.07□□□□□ -1.92
CBX4O00257 RNU6-301P-201ENST00000384277 107 ntBASIC3.07□□□□□ -1.92
CBX4O00257 AC005042.3-201ENST00000453230 174 ntBASIC3.07□□□□□ -1.92
CBX4O00257 HSPE1P25-201ENST00000455484 251 ntBASIC3.07□□□□□ -1.92
CBX4O00257 RNU7-14P-201ENST00000459331 62 ntBASIC3.07□□□□□ -1.92
CBX4O00257 RPS29P26-201ENST00000477483 171 ntBASIC3.07□□□□□ -1.92
CBX4O00257 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC3.07□□□□□ -1.92
CBX4O00257 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC3.07□□□□□ -1.92
CBX4O00257 AC007318.2-201ENST00000620999 243 ntBASIC3.07□□□□□ -1.92
CBX4O00257 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
CBX4O00257 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
CBX4O00257 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.07□□□□□ -1.92
CBX4O00257 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
CBX4O00257 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
CBX4O00257 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
CBX4O00257 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
CBX4O00257 RNU6-1305P-201ENST00000364353 104 ntBASIC3.06□□□□□ -1.92
CBX4O00257 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC3.06□□□□□ -1.92
CBX4O00257 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
CBX4O00257 RNU6-546P-201ENST00000383991 107 ntBASIC3.06□□□□□ -1.92
CBX4O00257 Y_RNA.478-201ENST00000384358 107 ntBASIC3.06□□□□□ -1.92
CBX4O00257 Y_RNA.562-201ENST00000384695 113 ntBASIC3.06□□□□□ -1.92
CBX4O00257 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.06□□□□□ -1.92
CBX4O00257 MIR300-201ENST00000401138 83 ntBASIC3.06□□□□□ -1.92
CBX4O00257 RNA5SP274-201ENST00000410484 108 ntBASIC3.06□□□□□ -1.92
CBX4O00257 RNU6-847P-201ENST00000411115 108 ntBASIC3.06□□□□□ -1.92
CBX4O00257 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC3.06□□□□□ -1.92
CBX4O00257 AC139712.2-201ENST00000424302 339 ntBASIC3.06□□□□□ -1.92
CBX4O00257 TRIAP1P1-201ENST00000427062 225 ntBASIC3.06□□□□□ -1.92
CBX4O00257 AC074290.1-201ENST00000448883 135 ntBASIC3.06□□□□□ -1.92
CBX4O00257 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC3.06□□□□□ -1.92
CBX4O00257 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC3.06□□□□□ -1.92
CBX4O00257 AL356280.1-201ENST00000603614 379 ntBASIC3.06□□□□□ -1.92
CBX4O00257 AC022441.3-201ENST00000605737 136 ntBASIC3.06□□□□□ -1.92
CBX4O00257 AC090425.1-201ENST00000610007 140 ntBASIC3.06□□□□□ -1.92
CBX4O00257 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC3.06□□□□□ -1.92
CBX4O00257 AC004467.1-201ENST00000615678 330 ntBASIC3.06□□□□□ -1.92
CBX4O00257 AC008873.1-201ENST00000625051 138 ntBASIC3.06□□□□□ -1.92
CBX4O00257 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC3.05□□□□□ -1.92
CBX4O00257 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.05□□□□□ -1.92
CBX4O00257 MIR410-201ENST00000362222 80 ntBASIC3.05□□□□□ -1.92
CBX4O00257 U3.8-201ENST00000363675 217 ntBASIC3.05□□□□□ -1.92
CBX4O00257 MIR586-201ENST00000385035 97 ntBASIC3.05□□□□□ -1.92
CBX4O00257 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
CBX4O00257 RNU6-220P-201ENST00000390919 107 ntBASIC3.05□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms