Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 Y_RNA.653-201ENST00000459091 95 ntBASIC2.02□□□□□ -2.09
CHMP1AQ9HD42 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC2.02□□□□□ -2.09
CHMP1AQ9HD42 RNA5SP320-201ENST00000516263 124 ntBASIC2.02□□□□□ -2.09
CHMP1AQ9HD42 MIR514B-201ENST00000516774 80 ntBASIC2.02□□□□□ -2.09
CHMP1AQ9HD42 RNU4ATAC17P-201ENST00000517272 120 ntBASIC2.02□□□□□ -2.09
CHMP1AQ9HD42 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
CHMP1AQ9HD42 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.01□□□□□ -2.09
CHMP1AQ9HD42 MTND4P1-201ENST00000457501 1466 ntBASIC2.01□□□□□ -2.09
CHMP1AQ9HD42 MTND5P16-201ENST00000460269 1703 ntBASIC2.01□□□□□ -2.09
CHMP1AQ9HD42 Y_RNA.58-201ENST00000362807 102 ntBASIC2.01□□□□□ -2.09
CHMP1AQ9HD42 Y_RNA.154-201ENST00000363624 102 ntBASIC2.01□□□□□ -2.09
CHMP1AQ9HD42 Y_RNA.259-201ENST00000364619 101 ntBASIC2.01□□□□□ -2.09
CHMP1AQ9HD42 RNU6-99P-201ENST00000364721 107 ntBASIC2.01□□□□□ -2.09
CHMP1AQ9HD42 RNY3P1-201ENST00000365085 102 ntBASIC2.01□□□□□ -2.09
CHMP1AQ9HD42 RNY3-201ENST00000365484 102 ntBASIC2.01□□□□□ -2.09
CHMP1AQ9HD42 RNU11-3P-201ENST00000391111 133 ntBASIC2.01□□□□□ -2.09
CHMP1AQ9HD42 RNU1-139P-201ENST00000391307 165 ntBASIC2.01□□□□□ -2.09
CHMP1AQ9HD42 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC2.01□□□□□ -2.09
CHMP1AQ9HD42 MIR300-201ENST00000401138 83 ntBASIC2.01□□□□□ -2.09
CHMP1AQ9HD42 AC096920.1-201ENST00000423991 241 ntBASIC2.01□□□□□ -2.09
CHMP1AQ9HD42 AC063976.3-201ENST00000426849 329 ntBASIC2.01□□□□□ -2.09
CHMP1AQ9HD42 AC107083.1-201ENST00000439643 279 ntBASIC2.01□□□□□ -2.09
CHMP1AQ9HD42 AC025750.2-201ENST00000442609 450 ntBASIC2.01□□□□□ -2.09
CHMP1AQ9HD42 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC2.01□□□□□ -2.09
CHMP1AQ9HD42 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC2.01□□□□□ -2.09
CHMP1AQ9HD42 HMGN2P9-201ENST00000476875 229 ntBASIC2.01□□□□□ -2.09
CHMP1AQ9HD42 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC2.01□□□□□ -2.09
CHMP1AQ9HD42 AC022493.2-201ENST00000506122 481 ntBASIC2.01□□□□□ -2.09
CHMP1AQ9HD42 MTND3P22-201ENST00000510932 243 ntBASIC2.01□□□□□ -2.09
CHMP1AQ9HD42 RN7SKP132-201ENST00000516001 208 ntBASIC2.01□□□□□ -2.09
CHMP1AQ9HD42 RNU6-344P-201ENST00000516635 111 ntBASIC2.01□□□□□ -2.09
CHMP1AQ9HD42 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC2.01□□□□□ -2.09
CHMP1AQ9HD42 AP005660.1-201ENST00000522972 293 ntBASIC2.01□□□□□ -2.09
CHMP1AQ9HD42 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC2.01□□□□□ -2.09
CHMP1AQ9HD42 RAB11AP2-201ENST00000545905 639 ntBASIC2.01□□□□□ -2.09
CHMP1AQ9HD42 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC2.01□□□□□ -2.09
CHMP1AQ9HD42 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC2.01□□□□□ -2.09
CHMP1AQ9HD42 AC004584.2-201ENST00000570407 410 ntBASIC2.01□□□□□ -2.09
CHMP1AQ9HD42 MIR3200-201ENST00000580767 85 ntBASIC2.01□□□□□ -2.09
CHMP1AQ9HD42 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC2.01□□□□□ -2.09
CHMP1AQ9HD42 AL162373.1-201ENST00000620433 407 ntBASIC2.01□□□□□ -2.09
CHMP1AQ9HD42 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
CHMP1AQ9HD42 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
CHMP1AQ9HD42 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC2□□□□□ -2.09
CHMP1AQ9HD42 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2□□□□□ -2.09
CHMP1AQ9HD42 RNU4-73P-201ENST00000363164 141 ntBASIC2□□□□□ -2.09
CHMP1AQ9HD42 Y_RNA.364-201ENST00000365532 101 ntBASIC2□□□□□ -2.09
CHMP1AQ9HD42 RNU6-418P-201ENST00000384035 107 ntBASIC2□□□□□ -2.09
CHMP1AQ9HD42 RNU6-281P-201ENST00000384212 103 ntBASIC2□□□□□ -2.09
CHMP1AQ9HD42 SNORA48.2-201ENST00000390926 124 ntBASIC2□□□□□ -2.09
CHMP1AQ9HD42 COTL1P1-201ENST00000422309 375 ntBASIC2□□□□□ -2.09
CHMP1AQ9HD42 USP9YP16-201ENST00000430287 407 ntBASIC2□□□□□ -2.09
CHMP1AQ9HD42 AC007395.1-201ENST00000451333 677 ntBASIC2□□□□□ -2.09
CHMP1AQ9HD42 USP9YP23-201ENST00000455085 407 ntBASIC2□□□□□ -2.09
CHMP1AQ9HD42 RNU1-131P-201ENST00000458943 161 ntBASIC2□□□□□ -2.09
CHMP1AQ9HD42 U8.22-201ENST00000459141 133 ntBASIC2□□□□□ -2.09
CHMP1AQ9HD42 SNORD19B-201ENST00000459623 84 ntBASIC2□□□□□ -2.09
CHMP1AQ9HD42 AC091179.3-201ENST00000474761 144 ntBASIC2□□□□□ -2.09
CHMP1AQ9HD42 RNU6-1114P-201ENST00000516022 107 ntBASIC2□□□□□ -2.09
CHMP1AQ9HD42 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2□□□□□ -2.09
CHMP1AQ9HD42 RNA5SP24-201ENST00000516478 95 ntBASIC2□□□□□ -2.09
CHMP1AQ9HD42 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC2□□□□□ -2.09
CHMP1AQ9HD42 MIR5695-201ENST00000579717 85 ntBASIC2□□□□□ -2.09
CHMP1AQ9HD42 MIR4448-201ENST00000584360 86 ntBASIC2□□□□□ -2.09
CHMP1AQ9HD42 AC007229.1-201ENST00000590455 412 ntBASIC2□□□□□ -2.09
CHMP1AQ9HD42 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC2□□□□□ -2.09
CHMP1AQ9HD42 AL117336.2-201ENST00000602435 335 ntBASIC2□□□□□ -2.09
CHMP1AQ9HD42 MIR7106-201ENST00000612419 65 ntBASIC2□□□□□ -2.09
CHMP1AQ9HD42 MIR1244-1-201ENST00000612829 85 ntBASIC2□□□□□ -2.09
CHMP1AQ9HD42 AC130454.1-201ENST00000622948 401 ntBASIC2□□□□□ -2.09
CHMP1AQ9HD42 MIR1244-3-201ENST00000635744 85 ntBASIC2□□□□□ -2.09
CHMP1AQ9HD42 MIR1244-2-201ENST00000636449 85 ntBASIC2□□□□□ -2.09
CHMP1AQ9HD42 MIR1244-4-202ENST00000636813 85 ntBASIC2□□□□□ -2.09
CHMP1AQ9HD42 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
CHMP1AQ9HD42 AC009487.4-201ENST00000624969 3585 ntBASIC1.99□□□□□ -2.09
CHMP1AQ9HD42 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
CHMP1AQ9HD42 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC1.99□□□□□ -2.09
CHMP1AQ9HD42 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
CHMP1AQ9HD42 RNU1-62P-201ENST00000362599 164 ntBASIC1.99□□□□□ -2.09
CHMP1AQ9HD42 RNU6-23P-201ENST00000363283 107 ntBASIC1.99□□□□□ -2.09
CHMP1AQ9HD42 Y_RNA.132-201ENST00000363421 102 ntBASIC1.99□□□□□ -2.09
CHMP1AQ9HD42 RNU6-1305P-201ENST00000364353 104 ntBASIC1.99□□□□□ -2.09
CHMP1AQ9HD42 Y_RNA.557-201ENST00000384680 107 ntBASIC1.99□□□□□ -2.09
CHMP1AQ9HD42 MIR491-201ENST00000384877 84 ntBASIC1.99□□□□□ -2.09
CHMP1AQ9HD42 MIR586-201ENST00000385035 97 ntBASIC1.99□□□□□ -2.09
CHMP1AQ9HD42 RNA5SP465-201ENST00000391195 109 ntBASIC1.99□□□□□ -2.09
CHMP1AQ9HD42 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC1.99□□□□□ -2.09
CHMP1AQ9HD42 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC1.99□□□□□ -2.09
CHMP1AQ9HD42 EIF1P2-201ENST00000428233 350 ntBASIC1.99□□□□□ -2.09
CHMP1AQ9HD42 AC092423.1-201ENST00000430165 186 ntBASIC1.99□□□□□ -2.09
CHMP1AQ9HD42 AC096638.1-201ENST00000444678 216 ntBASIC1.99□□□□□ -2.09
CHMP1AQ9HD42 AL109933.2-201ENST00000452651 260 ntBASIC1.99□□□□□ -2.09
CHMP1AQ9HD42 AC026436.1-201ENST00000510537 270 ntBASIC1.99□□□□□ -2.09
CHMP1AQ9HD42 RNU6-470P-201ENST00000515954 104 ntBASIC1.99□□□□□ -2.09
CHMP1AQ9HD42 RNU1-117P-201ENST00000517041 158 ntBASIC1.99□□□□□ -2.09
CHMP1AQ9HD42 AC021269.2-201ENST00000532318 330 ntBASIC1.99□□□□□ -2.09
CHMP1AQ9HD42 SUB1P3-201ENST00000564581 315 ntBASIC1.99□□□□□ -2.09
CHMP1AQ9HD42 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.99□□□□□ -2.09
CHMP1AQ9HD42 MIR4795-201ENST00000584182 89 ntBASIC1.99□□□□□ -2.09
CHMP1AQ9HD42 MIR4753-201ENST00000585119 83 ntBASIC1.99□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms