Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 RNU6-312P-201ENST00000364629 107 ntBASIC3.16□□□□□ -1.9
CHFRQ96EP1 RNU6-1175P-201ENST00000365200 107 ntBASIC3.16□□□□□ -1.9
CHFRQ96EP1 RNU6-211P-201ENST00000384047 107 ntBASIC3.16□□□□□ -1.9
CHFRQ96EP1 EEF1A1P41-201ENST00000414667 207 ntBASIC3.16□□□□□ -1.9
CHFRQ96EP1 MTND4LP9-201ENST00000427694 174 ntBASIC3.16□□□□□ -1.9
CHFRQ96EP1 AL356867.1-201ENST00000429623 299 ntBASIC3.16□□□□□ -1.9
CHFRQ96EP1 AC022018.1-201ENST00000430685 241 ntBASIC3.16□□□□□ -1.9
CHFRQ96EP1 AL627311.1-201ENST00000431514 115 ntBASIC3.16□□□□□ -1.9
CHFRQ96EP1 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC3.16□□□□□ -1.9
CHFRQ96EP1 AL135938.1-201ENST00000443141 297 ntBASIC3.16□□□□□ -1.9
CHFRQ96EP1 AC091826.1-201ENST00000514065 313 ntBASIC3.16□□□□□ -1.9
CHFRQ96EP1 SNORA40.9-201ENST00000515895 93 ntBASIC3.16□□□□□ -1.9
CHFRQ96EP1 RNU6-377P-201ENST00000515965 102 ntBASIC3.16□□□□□ -1.9
CHFRQ96EP1 RN7SKP132-201ENST00000516001 208 ntBASIC3.16□□□□□ -1.9
CHFRQ96EP1 RNU6-966P-201ENST00000516479 104 ntBASIC3.16□□□□□ -1.9
CHFRQ96EP1 SNORA64.4-201ENST00000516632 81 ntBASIC3.16□□□□□ -1.9
CHFRQ96EP1 SCARNA20.6-201ENST00000517251 106 ntBASIC3.16□□□□□ -1.9
CHFRQ96EP1 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC3.16□□□□□ -1.9
CHFRQ96EP1 CARD18-203ENST00000532895 422 ntTSL 2 BASIC3.16□□□□□ -1.9
CHFRQ96EP1 snoU18.1-201ENST00000629629 71 ntBASIC3.16□□□□□ -1.9
CHFRQ96EP1 MIR4679-1-201ENST00000637619 75 ntBASIC3.16□□□□□ -1.9
CHFRQ96EP1 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.16□□□□□ -1.9
CHFRQ96EP1 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.16□□□□□ -1.9
CHFRQ96EP1 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
CHFRQ96EP1 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
CHFRQ96EP1 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
CHFRQ96EP1 AC000403.1-201ENST00000613696 3585 ntBASIC3.15□□□□□ -1.9
CHFRQ96EP1 MIR22-201ENST00000362190 85 ntBASIC3.15□□□□□ -1.91
CHFRQ96EP1 Y_RNA.23-201ENST00000362496 106 ntBASIC3.15□□□□□ -1.91
CHFRQ96EP1 Y_RNA.43-201ENST00000362670 111 ntBASIC3.15□□□□□ -1.91
CHFRQ96EP1 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
CHFRQ96EP1 MIR32-201ENST00000384965 70 ntBASIC3.15□□□□□ -1.91
CHFRQ96EP1 RNU2-2P-201ENST00000410396 191 ntBASIC3.15□□□□□ -1.91
CHFRQ96EP1 AL513477.1-202ENST00000417061 214 ntBASIC3.15□□□□□ -1.91
CHFRQ96EP1 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC3.15□□□□□ -1.91
CHFRQ96EP1 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC3.15□□□□□ -1.91
CHFRQ96EP1 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC3.15□□□□□ -1.91
CHFRQ96EP1 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC3.15□□□□□ -1.91
CHFRQ96EP1 POLR2KP2-201ENST00000438155 177 ntBASIC3.15□□□□□ -1.91
CHFRQ96EP1 AC096638.1-201ENST00000444678 216 ntBASIC3.15□□□□□ -1.91
CHFRQ96EP1 AL137159.1-201ENST00000452808 512 ntBASIC3.15□□□□□ -1.91
CHFRQ96EP1 FABP5P15-201ENST00000453566 214 ntBASIC3.15□□□□□ -1.91
CHFRQ96EP1 AC010099.1-201ENST00000455434 375 ntBASIC3.15□□□□□ -1.91
CHFRQ96EP1 HSPE1P6-201ENST00000479457 291 ntBASIC3.15□□□□□ -1.91
CHFRQ96EP1 AF186996.7-201ENST00000492781 209 ntBASIC3.15□□□□□ -1.91
CHFRQ96EP1 PDCD5P2-201ENST00000507570 312 ntBASIC3.15□□□□□ -1.91
CHFRQ96EP1 RNA5SP356-201ENST00000515972 94 ntBASIC3.15□□□□□ -1.91
CHFRQ96EP1 RNU4-57P-201ENST00000515980 135 ntBASIC3.15□□□□□ -1.91
CHFRQ96EP1 RN7SKP49-201ENST00000516675 260 ntBASIC3.15□□□□□ -1.91
CHFRQ96EP1 RNU6-1234P-201ENST00000516877 103 ntBASIC3.15□□□□□ -1.91
CHFRQ96EP1 AC020895.1-201ENST00000595362 272 ntBASIC3.15□□□□□ -1.91
CHFRQ96EP1 RNU2-4P-201ENST00000606190 192 ntBASIC3.15□□□□□ -1.91
CHFRQ96EP1 U2.15-201ENST00000611544 191 ntBASIC3.15□□□□□ -1.91
CHFRQ96EP1 RMST_6.1-201ENST00000611980 203 ntBASIC3.15□□□□□ -1.91
CHFRQ96EP1 U2.16-201ENST00000613119 191 ntBASIC3.15□□□□□ -1.91
CHFRQ96EP1 U2.12-201ENST00000613778 191 ntBASIC3.15□□□□□ -1.91
CHFRQ96EP1 U2.9-201ENST00000615427 191 ntBASIC3.15□□□□□ -1.91
CHFRQ96EP1 U2.11-201ENST00000616345 191 ntBASIC3.15□□□□□ -1.91
CHFRQ96EP1 U2.2-201ENST00000616535 191 ntBASIC3.15□□□□□ -1.91
CHFRQ96EP1 U2.3-201ENST00000617785 191 ntBASIC3.15□□□□□ -1.91
CHFRQ96EP1 U2.19-201ENST00000618602 191 ntBASIC3.15□□□□□ -1.91
CHFRQ96EP1 RNU2-1-201ENST00000618664 191 ntBASIC3.15□□□□□ -1.91
CHFRQ96EP1 U2.6-201ENST00000619225 191 ntBASIC3.15□□□□□ -1.91
CHFRQ96EP1 U2.5-201ENST00000619465 191 ntBASIC3.15□□□□□ -1.91
CHFRQ96EP1 U2.10-201ENST00000620268 191 ntBASIC3.15□□□□□ -1.91
CHFRQ96EP1 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC3.15□□□□□ -1.91
CHFRQ96EP1 U4.7-201ENST00000638126 106 ntBASIC3.15□□□□□ -1.91
CHFRQ96EP1 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.15□□□□□ -1.91
CHFRQ96EP1 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
CHFRQ96EP1 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC3.14□□□□□ -1.91
CHFRQ96EP1 RNU1-105P-201ENST00000363470 161 ntBASIC3.14□□□□□ -1.91
CHFRQ96EP1 SNORD115-32-201ENST00000364079 82 ntBASIC3.14□□□□□ -1.91
CHFRQ96EP1 Y_RNA.238-201ENST00000364441 102 ntBASIC3.14□□□□□ -1.91
CHFRQ96EP1 Y_RNA.331-201ENST00000365267 102 ntBASIC3.14□□□□□ -1.91
CHFRQ96EP1 RNU6-741P-201ENST00000383889 107 ntBASIC3.14□□□□□ -1.91
CHFRQ96EP1 SNORD116-14-201ENST00000383894 92 ntBASIC3.14□□□□□ -1.91
CHFRQ96EP1 SNORD116-17-201ENST00000383929 92 ntBASIC3.14□□□□□ -1.91
CHFRQ96EP1 SNORD116-15-201ENST00000384445 92 ntBASIC3.14□□□□□ -1.91
CHFRQ96EP1 SNORD116-20-201ENST00000384529 92 ntBASIC3.14□□□□□ -1.91
CHFRQ96EP1 SNORD116-19-201ENST00000384729 92 ntBASIC3.14□□□□□ -1.91
CHFRQ96EP1 SNORA40-201ENST00000388090 126 ntBASIC3.14□□□□□ -1.91
CHFRQ96EP1 RNU2-52P-201ENST00000410680 190 ntBASIC3.14□□□□□ -1.91
CHFRQ96EP1 Z82210.1-201ENST00000440037 231 ntBASIC3.14□□□□□ -1.91
CHFRQ96EP1 UBBP3-201ENST00000445497 241 ntBASIC3.14□□□□□ -1.91
CHFRQ96EP1 RPL30P5-201ENST00000494923 336 ntBASIC3.14□□□□□ -1.91
CHFRQ96EP1 YWHAEP4-201ENST00000505390 198 ntBASIC3.14□□□□□ -1.91
CHFRQ96EP1 RNU6-1114P-201ENST00000516022 107 ntBASIC3.14□□□□□ -1.91
CHFRQ96EP1 AC068657.1-201ENST00000520807 306 ntBASIC3.14□□□□□ -1.91
CHFRQ96EP1 AC104027.1-201ENST00000521887 300 ntBASIC3.14□□□□□ -1.91
CHFRQ96EP1 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC3.14□□□□□ -1.91
CHFRQ96EP1 AC055872.1-201ENST00000570978 278 ntBASIC3.14□□□□□ -1.91
CHFRQ96EP1 MIR548X2-201ENST00000579776 100 ntBASIC3.14□□□□□ -1.91
CHFRQ96EP1 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC3.14□□□□□ -1.91
CHFRQ96EP1 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
CHFRQ96EP1 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.14□□□□□ -1.91
CHFRQ96EP1 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.14□□□□□ -1.91
CHFRQ96EP1 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.13□□□□□ -1.91
CHFRQ96EP1 Y_RNA.7-201ENST00000362352 102 ntBASIC3.13□□□□□ -1.91
CHFRQ96EP1 Y_RNA.75-201ENST00000362927 97 ntBASIC3.13□□□□□ -1.91
CHFRQ96EP1 RNU6-968P-201ENST00000384076 107 ntBASIC3.13□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 131 ms