Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 RNU6-60P-201ENST00000364792 103 ntBASIC1.58□□□□□ -2.16
CCDC40Q4G0X9 MIR520A-201ENST00000384862 85 ntBASIC1.58□□□□□ -2.16
CCDC40Q4G0X9 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.58□□□□□ -2.16
CCDC40Q4G0X9 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC1.58□□□□□ -2.16
CCDC40Q4G0X9 RNA5SP213-201ENST00000391031 106 ntBASIC1.58□□□□□ -2.16
CCDC40Q4G0X9 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.58□□□□□ -2.16
CCDC40Q4G0X9 MIR450B-201ENST00000401182 78 ntBASIC1.58□□□□□ -2.16
CCDC40Q4G0X9 AL117342.1-201ENST00000404861 406 ntBASIC1.58□□□□□ -2.16
CCDC40Q4G0X9 AC007098.1-201ENST00000420122 367 ntBASIC1.58□□□□□ -2.16
CCDC40Q4G0X9 AC060773.1-201ENST00000421698 310 ntBASIC1.58□□□□□ -2.16
CCDC40Q4G0X9 C8orf59P1-201ENST00000429930 303 ntBASIC1.58□□□□□ -2.16
CCDC40Q4G0X9 ERLEC1P1-201ENST00000433806 578 ntBASIC1.58□□□□□ -2.16
CCDC40Q4G0X9 AC019235.1-201ENST00000503847 207 ntBASIC1.58□□□□□ -2.16
CCDC40Q4G0X9 HMGN1P13-201ENST00000505795 138 ntBASIC1.58□□□□□ -2.16
CCDC40Q4G0X9 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC1.58□□□□□ -2.16
CCDC40Q4G0X9 MIR4422-201ENST00000581938 83 ntBASIC1.58□□□□□ -2.16
CCDC40Q4G0X9 MIR5006-201ENST00000583027 110 ntBASIC1.58□□□□□ -2.16
CCDC40Q4G0X9 TCL6_2.1-201ENST00000615162 119 ntBASIC1.58□□□□□ -2.16
CCDC40Q4G0X9 AL359757.2-201ENST00000624309 274 ntBASIC1.58□□□□□ -2.16
CCDC40Q4G0X9 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC1.58□□□□□ -2.16
CCDC40Q4G0X9 AC010615.1-201ENST00000594254 1764 ntBASIC1.57□□□□□ -2.16
CCDC40Q4G0X9 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.57□□□□□ -2.16
CCDC40Q4G0X9 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
CCDC40Q4G0X9 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
CCDC40Q4G0X9 RNU6-414P-201ENST00000363705 104 ntBASIC1.57□□□□□ -2.16
CCDC40Q4G0X9 RNU1-78P-201ENST00000391248 165 ntBASIC1.57□□□□□ -2.16
CCDC40Q4G0X9 AC004866.1-201ENST00000411748 78 ntBASIC1.57□□□□□ -2.16
CCDC40Q4G0X9 SNRPEP10-201ENST00000420249 274 ntBASIC1.57□□□□□ -2.16
CCDC40Q4G0X9 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC1.57□□□□□ -2.16
CCDC40Q4G0X9 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC1.57□□□□□ -2.16
CCDC40Q4G0X9 SEPT14P3-201ENST00000439401 183 ntBASIC1.57□□□□□ -2.16
CCDC40Q4G0X9 HSPE1P9-201ENST00000440046 311 ntBASIC1.57□□□□□ -2.16
CCDC40Q4G0X9 SNRPGP13-201ENST00000442212 177 ntBASIC1.57□□□□□ -2.16
CCDC40Q4G0X9 AL732372.2-207ENST00000445840 183 ntBASIC1.57□□□□□ -2.16
CCDC40Q4G0X9 OR2AQ1P-201ENST00000451972 200 ntBASIC1.57□□□□□ -2.16
CCDC40Q4G0X9 SEPT14P2-201ENST00000453405 183 ntBASIC1.57□□□□□ -2.16
CCDC40Q4G0X9 MTCO3P8-201ENST00000453691 755 ntBASIC1.57□□□□□ -2.16
CCDC40Q4G0X9 SEPT14P4-201ENST00000513445 186 ntBASIC1.57□□□□□ -2.16
CCDC40Q4G0X9 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC1.57□□□□□ -2.16
CCDC40Q4G0X9 Y_RNA.704-201ENST00000516851 102 ntBASIC1.57□□□□□ -2.16
CCDC40Q4G0X9 FO082796.1-201ENST00000523795 183 ntBASIC1.57□□□□□ -2.16
CCDC40Q4G0X9 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC1.57□□□□□ -2.16
CCDC40Q4G0X9 AC026371.1-201ENST00000551867 419 ntBASIC1.57□□□□□ -2.16
CCDC40Q4G0X9 SNORA77B-201ENST00000578179 125 ntBASIC1.57□□□□□ -2.16
CCDC40Q4G0X9 MIR3124-201ENST00000582636 67 ntBASIC1.57□□□□□ -2.16
CCDC40Q4G0X9 MIR4753-201ENST00000585119 83 ntBASIC1.57□□□□□ -2.16
CCDC40Q4G0X9 AP000907.4-201ENST00000604143 237 ntBASIC1.57□□□□□ -2.16
CCDC40Q4G0X9 AL645939.4-201ENST00000604495 135 ntBASIC1.57□□□□□ -2.16
CCDC40Q4G0X9 AL353997.5-201ENST00000618886 171 ntBASIC1.57□□□□□ -2.16
CCDC40Q4G0X9 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
CCDC40Q4G0X9 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
CCDC40Q4G0X9 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
CCDC40Q4G0X9 RNU6-254P-201ENST00000363377 107 ntBASIC1.56□□□□□ -2.16
CCDC40Q4G0X9 RNU4-13P-201ENST00000364019 141 ntBASIC1.56□□□□□ -2.16
CCDC40Q4G0X9 RNU6-1019P-201ENST00000364424 107 ntBASIC1.56□□□□□ -2.16
CCDC40Q4G0X9 RNU6-784P-201ENST00000384330 106 ntBASIC1.56□□□□□ -2.16
CCDC40Q4G0X9 RNU6-933P-201ENST00000384424 107 ntBASIC1.56□□□□□ -2.16
CCDC40Q4G0X9 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC1.56□□□□□ -2.16
CCDC40Q4G0X9 HMGN2P9-201ENST00000476875 229 ntBASIC1.56□□□□□ -2.16
CCDC40Q4G0X9 RPL26P26-201ENST00000480251 434 ntBASIC1.56□□□□□ -2.16
CCDC40Q4G0X9 AC011406.1-201ENST00000512440 370 ntBASIC1.56□□□□□ -2.16
CCDC40Q4G0X9 RNU6-1281P-201ENST00000516223 105 ntBASIC1.56□□□□□ -2.16
CCDC40Q4G0X9 RNU2-34P-201ENST00000516534 121 ntBASIC1.56□□□□□ -2.16
CCDC40Q4G0X9 RNA5SP384-201ENST00000516615 116 ntBASIC1.56□□□□□ -2.16
CCDC40Q4G0X9 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
CCDC40Q4G0X9 AC084364.2-201ENST00000546924 395 ntBASIC1.56□□□□□ -2.16
CCDC40Q4G0X9 RRN3P3-201ENST00000549207 578 ntBASIC1.56□□□□□ -2.16
CCDC40Q4G0X9 AC010525.2-201ENST00000590920 195 ntBASIC1.56□□□□□ -2.16
CCDC40Q4G0X9 AC146944.4-201ENST00000602697 718 ntBASIC1.56□□□□□ -2.16
CCDC40Q4G0X9 AP001485.1-201ENST00000604799 199 ntBASIC1.56□□□□□ -2.16
CCDC40Q4G0X9 MIR3976-201ENST00000606807 139 ntBASIC1.56□□□□□ -2.16
CCDC40Q4G0X9 AC092954.2-201ENST00000609103 430 ntBASIC1.56□□□□□ -2.16
CCDC40Q4G0X9 BX322639.1-202ENST00000423987 2213 ntBASIC1.56□□□□□ -2.16
CCDC40Q4G0X9 SNORD113-7-201ENST00000363762 77 ntBASIC1.55□□□□□ -2.16
CCDC40Q4G0X9 Y_RNA.372-201ENST00000365599 102 ntBASIC1.55□□□□□ -2.16
CCDC40Q4G0X9 RNU6-483P-201ENST00000384088 108 ntBASIC1.55□□□□□ -2.16
CCDC40Q4G0X9 MIR1267-201ENST00000408723 78 ntBASIC1.55□□□□□ -2.16
CCDC40Q4G0X9 RNU6-174P-201ENST00000410406 106 ntBASIC1.55□□□□□ -2.16
CCDC40Q4G0X9 RNU2-7P-201ENST00000410794 178 ntBASIC1.55□□□□□ -2.16
CCDC40Q4G0X9 AC009237.7-201ENST00000447357 229 ntBASIC1.55□□□□□ -2.16
CCDC40Q4G0X9 AC016717.1-201ENST00000448918 286 ntBASIC1.55□□□□□ -2.16
CCDC40Q4G0X9 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.55□□□□□ -2.16
CCDC40Q4G0X9 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC1.55□□□□□ -2.16
CCDC40Q4G0X9 AC007215.1-201ENST00000464893 276 ntBASIC1.55□□□□□ -2.16
CCDC40Q4G0X9 Y_RNA.665-201ENST00000516177 98 ntBASIC1.55□□□□□ -2.16
CCDC40Q4G0X9 RNA5SP61-201ENST00000516453 100 ntBASIC1.55□□□□□ -2.16
CCDC40Q4G0X9 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC1.55□□□□□ -2.16
CCDC40Q4G0X9 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC1.55□□□□□ -2.16
CCDC40Q4G0X9 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC1.55□□□□□ -2.16
CCDC40Q4G0X9 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC1.55□□□□□ -2.16
CCDC40Q4G0X9 AL162413.1-201ENST00000603198 110 ntBASIC1.55□□□□□ -2.16
CCDC40Q4G0X9 AL133215.3-201ENST00000609801 448 ntBASIC1.55□□□□□ -2.16
CCDC40Q4G0X9 DISC2.1-201ENST00000612827 205 ntBASIC1.55□□□□□ -2.16
CCDC40Q4G0X9 AC126177.8-201ENST00000618339 1015 ntBASIC1.55□□□□□ -2.16
CCDC40Q4G0X9 AL359697.1-201ENST00000624879 587 ntBASIC1.55□□□□□ -2.16
CCDC40Q4G0X9 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.55□□□□□ -2.16
CCDC40Q4G0X9 RNU1-62P-201ENST00000362599 164 ntBASIC1.54□□□□□ -2.16
CCDC40Q4G0X9 SNORA63D-201ENST00000364359 132 ntBASIC1.54□□□□□ -2.16
CCDC40Q4G0X9 MIR548B-201ENST00000385247 97 ntBASIC1.54□□□□□ -2.16
CCDC40Q4G0X9 RNU6-360P-201ENST00000390944 104 ntBASIC1.54□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 87.9 ms