Protein–RNA interactions for Protein: Q12948

FOXC1, Forkhead box protein C1, humanhuman

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXC1Q12948 SNORD108-201ENST00000459332 71 ntBASIC4.09□□□□□ -1.75
FOXC1Q12948 AL592156.1-201ENST00000508758 304 ntBASIC4.09□□□□□ -1.75
FOXC1Q12948 RNU7-123P-201ENST00000515911 60 ntBASIC4.09□□□□□ -1.75
FOXC1Q12948 RNU6-693P-201ENST00000516134 107 ntBASIC4.09□□□□□ -1.75
FOXC1Q12948 RNU5F-4P-201ENST00000516581 114 ntBASIC4.09□□□□□ -1.75
FOXC1Q12948 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
FOXC1Q12948 RPL23AP97-201ENST00000568955 471 ntBASIC4.09□□□□□ -1.75
FOXC1Q12948 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
FOXC1Q12948 AC005086.4-201ENST00000623065 213 ntBASIC4.09□□□□□ -1.75
FOXC1Q12948 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC4.09□□□□□ -1.75
FOXC1Q12948 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
FOXC1Q12948 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC4.09□□□□□ -1.75
FOXC1Q12948 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
FOXC1Q12948 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.76
FOXC1Q12948 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
FOXC1Q12948 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
FOXC1Q12948 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
FOXC1Q12948 Y_RNA.190-201ENST00000363964 101 ntBASIC4.08□□□□□ -1.76
FOXC1Q12948 RNY1P6-201ENST00000384193 109 ntBASIC4.08□□□□□ -1.76
FOXC1Q12948 RNU6-750P-201ENST00000390946 107 ntBASIC4.08□□□□□ -1.76
FOXC1Q12948 RNU6-57P-201ENST00000411348 103 ntBASIC4.08□□□□□ -1.76
FOXC1Q12948 HSPE1P12-201ENST00000412576 301 ntBASIC4.08□□□□□ -1.76
FOXC1Q12948 AC009238.1-201ENST00000442165 424 ntBASIC4.08□□□□□ -1.76
FOXC1Q12948 AC009237.6-201ENST00000446969 424 ntBASIC4.08□□□□□ -1.76
FOXC1Q12948 PTMAP3-201ENST00000447474 330 ntBASIC4.08□□□□□ -1.76
FOXC1Q12948 HMGN2P21-201ENST00000447764 270 ntBASIC4.08□□□□□ -1.76
FOXC1Q12948 AC109329.2-201ENST00000519658 482 ntBASIC4.08□□□□□ -1.76
FOXC1Q12948 AC068657.1-201ENST00000520807 306 ntBASIC4.08□□□□□ -1.76
FOXC1Q12948 AC011602.1-201ENST00000546484 331 ntBASIC4.08□□□□□ -1.76
FOXC1Q12948 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC4.08□□□□□ -1.76
FOXC1Q12948 AC006349.1-201ENST00000555526 235 ntBASIC4.08□□□□□ -1.76
FOXC1Q12948 MIR548Z-201ENST00000584743 97 ntBASIC4.08□□□□□ -1.76
FOXC1Q12948 HMGN2P15-201ENST00000585707 270 ntBASIC4.08□□□□□ -1.76
FOXC1Q12948 AC058791.1-201ENST00000608412 3198 ntBASIC4.08□□□□□ -1.76
FOXC1Q12948 MAPK10-304ENST00000641341 3984 ntBASIC4.08□□□□□ -1.76
FOXC1Q12948 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC4.08□□□□□ -1.76
FOXC1Q12948 FAM35BP-202ENST00000497389 3337 ntBASIC4.08□□□□□ -1.76
FOXC1Q12948 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
FOXC1Q12948 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.08□□□□□ -1.76
FOXC1Q12948 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
FOXC1Q12948 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
FOXC1Q12948 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC4.07□□□□□ -1.76
FOXC1Q12948 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC4.07□□□□□ -1.76
FOXC1Q12948 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.07□□□□□ -1.76
FOXC1Q12948 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
FOXC1Q12948 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
FOXC1Q12948 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
FOXC1Q12948 Y_RNA.426-201ENST00000384068 113 ntBASIC4.07□□□□□ -1.76
FOXC1Q12948 HMGN2P31-201ENST00000432430 273 ntBASIC4.07□□□□□ -1.76
FOXC1Q12948 VDAC1P3-201ENST00000434069 851 ntBASIC4.07□□□□□ -1.76
FOXC1Q12948 RNU2-11P-201ENST00000459191 187 ntBASIC4.07□□□□□ -1.76
FOXC1Q12948 RNU7-164P-201ENST00000459221 62 ntBASIC4.07□□□□□ -1.76
FOXC1Q12948 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.07□□□□□ -1.76
FOXC1Q12948 AC004486.1-201ENST00000546846 233 ntBASIC4.07□□□□□ -1.76
FOXC1Q12948 MIR4694-201ENST00000578534 80 ntBASIC4.07□□□□□ -1.76
FOXC1Q12948 MIR5195-201ENST00000583555 115 ntBASIC4.07□□□□□ -1.76
FOXC1Q12948 MIR4753-201ENST00000585119 83 ntBASIC4.07□□□□□ -1.76
FOXC1Q12948 SCARNA15.3-201ENST00000626315 122 ntBASIC4.07□□□□□ -1.76
FOXC1Q12948 SCARNA4.1-201ENST00000628597 123 ntBASIC4.07□□□□□ -1.76
FOXC1Q12948 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
FOXC1Q12948 NEAT1-202ENST00000501122 22743 ntBASIC4.07□□□□□ -1.76
FOXC1Q12948 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.07□□□□□ -1.76
FOXC1Q12948 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
FOXC1Q12948 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC4.07□□□□□ -1.76
FOXC1Q12948 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC4.06□□□□□ -1.76
FOXC1Q12948 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC4.06□□□□□ -1.76
FOXC1Q12948 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC4.06□□□□□ -1.76
FOXC1Q12948 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
FOXC1Q12948 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
FOXC1Q12948 RNU6-832P-201ENST00000363319 107 ntBASIC4.06□□□□□ -1.76
FOXC1Q12948 SNORA7.2-201ENST00000364446 145 ntBASIC4.06□□□□□ -1.76
FOXC1Q12948 MIR577-201ENST00000385196 96 ntBASIC4.06□□□□□ -1.76
FOXC1Q12948 RN7SKP156-201ENST00000410308 342 ntBASIC4.06□□□□□ -1.76
FOXC1Q12948 AC016909.1-201ENST00000415916 166 ntBASIC4.06□□□□□ -1.76
FOXC1Q12948 SNRPGP13-201ENST00000442212 177 ntBASIC4.06□□□□□ -1.76
FOXC1Q12948 AC016717.1-201ENST00000448918 286 ntBASIC4.06□□□□□ -1.76
FOXC1Q12948 AC113410.1-201ENST00000505029 247 ntBASIC4.06□□□□□ -1.76
FOXC1Q12948 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC4.06□□□□□ -1.76
FOXC1Q12948 MIR4472-2-201ENST00000582069 67 ntBASIC4.06□□□□□ -1.76
FOXC1Q12948 MIR4777-201ENST00000583710 86 ntBASIC4.06□□□□□ -1.76
FOXC1Q12948 AC008507.4-201ENST00000585464 127 ntBASIC4.06□□□□□ -1.76
FOXC1Q12948 AC008739.2-201ENST00000597006 317 ntBASIC4.06□□□□□ -1.76
FOXC1Q12948 PCNP-208ENST00000627393 136 ntTSL 2 BASIC4.06□□□□□ -1.76
FOXC1Q12948 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
FOXC1Q12948 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC4.06□□□□□ -1.76
FOXC1Q12948 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
FOXC1Q12948 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
FOXC1Q12948 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC4.06□□□□□ -1.76
FOXC1Q12948 AC009487.4-201ENST00000624969 3585 ntBASIC4.06□□□□□ -1.76
FOXC1Q12948 PWAR6-201ENST00000552334 4618 ntBASIC4.05□□□□□ -1.76
FOXC1Q12948 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
FOXC1Q12948 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC4.05□□□□□ -1.76
FOXC1Q12948 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC4.05□□□□□ -1.76
FOXC1Q12948 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC4.05□□□□□ -1.76
FOXC1Q12948 MIR124-3-201ENST00000384866 87 ntBASIC4.05□□□□□ -1.76
FOXC1Q12948 Y_RNA.620-201ENST00000411009 88 ntBASIC4.05□□□□□ -1.76
FOXC1Q12948 AC007738.1-201ENST00000413892 348 ntBASIC4.05□□□□□ -1.76
FOXC1Q12948 AL513477.1-202ENST00000417061 214 ntBASIC4.05□□□□□ -1.76
FOXC1Q12948 RPL23AP46-201ENST00000438548 490 ntBASIC4.05□□□□□ -1.76
FOXC1Q12948 RPS27P22-201ENST00000478056 241 ntBASIC4.05□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 112.9 ms