Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC3.7□□□□□ -1.82
SOX4Q06945 LARP7P3-201ENST00000579888 337 ntBASIC3.7□□□□□ -1.82
SOX4Q06945 MIR3200-201ENST00000580767 85 ntBASIC3.7□□□□□ -1.82
SOX4Q06945 MIR3609-201ENST00000582661 80 ntBASIC3.7□□□□□ -1.82
SOX4Q06945 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC3.7□□□□□ -1.82
SOX4Q06945 RPS15AP11-201ENST00000594193 385 ntBASIC3.7□□□□□ -1.82
SOX4Q06945 AC011603.4-201ENST00000611325 277 ntBASIC3.7□□□□□ -1.82
SOX4Q06945 AL391903.3-201ENST00000612158 163 ntBASIC3.7□□□□□ -1.82
SOX4Q06945 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
SOX4Q06945 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
SOX4Q06945 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
SOX4Q06945 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC3.7□□□□□ -1.82
SOX4Q06945 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
SOX4Q06945 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
SOX4Q06945 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.69□□□□□ -1.82
SOX4Q06945 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.69□□□□□ -1.82
SOX4Q06945 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.69□□□□□ -1.82
SOX4Q06945 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.69□□□□□ -1.82
SOX4Q06945 RNU1-75P-201ENST00000347264 129 ntBASIC3.69□□□□□ -1.82
SOX4Q06945 U3.9-201ENST00000363823 204 ntBASIC3.69□□□□□ -1.82
SOX4Q06945 Y_RNA.310-201ENST00000365063 113 ntBASIC3.69□□□□□ -1.82
SOX4Q06945 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.69□□□□□ -1.82
SOX4Q06945 RNU6-407P-201ENST00000365280 104 ntBASIC3.69□□□□□ -1.82
SOX4Q06945 MT-TT-201ENST00000387460 66 ntBASIC3.69□□□□□ -1.82
SOX4Q06945 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
SOX4Q06945 RN7SKP111-201ENST00000410349 271 ntBASIC3.69□□□□□ -1.82
SOX4Q06945 RNA5SP120-201ENST00000410900 112 ntBASIC3.69□□□□□ -1.82
SOX4Q06945 TOMM22P2-201ENST00000430735 237 ntBASIC3.69□□□□□ -1.82
SOX4Q06945 snoU13.28-201ENST00000459235 104 ntBASIC3.69□□□□□ -1.82
SOX4Q06945 RNU7-141P-201ENST00000459304 62 ntBASIC3.69□□□□□ -1.82
SOX4Q06945 RPL23AP62-201ENST00000463396 453 ntBASIC3.69□□□□□ -1.82
SOX4Q06945 RN7SL601P-201ENST00000471221 293 ntBASIC3.69□□□□□ -1.82
SOX4Q06945 RNU2-44P-201ENST00000516795 194 ntBASIC3.69□□□□□ -1.82
SOX4Q06945 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.69□□□□□ -1.82
SOX4Q06945 MIR5688-201ENST00000580619 83 ntBASIC3.69□□□□□ -1.82
SOX4Q06945 U6.115-201ENST00000636045 103 ntBASIC3.69□□□□□ -1.82
SOX4Q06945 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC3.69□□□□□ -1.82
SOX4Q06945 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.69□□□□□ -1.82
SOX4Q06945 MFSD8-233ENST00000641482 4860 ntBASIC3.69□□□□□ -1.82
SOX4Q06945 AC073346.2-201ENST00000624724 2058 ntBASIC3.69□□□□□ -1.82
SOX4Q06945 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
SOX4Q06945 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC3.69□□□□□ -1.82
SOX4Q06945 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.68□□□□□ -1.82
SOX4Q06945 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.68□□□□□ -1.82
SOX4Q06945 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
SOX4Q06945 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
SOX4Q06945 MIR423-201ENST00000362201 94 ntBASIC3.68□□□□□ -1.82
SOX4Q06945 RNU6-834P-201ENST00000362367 110 ntBASIC3.68□□□□□ -1.82
SOX4Q06945 SNORA18.2-201ENST00000383865 132 ntBASIC3.68□□□□□ -1.82
SOX4Q06945 RNU6-643P-201ENST00000384018 107 ntBASIC3.68□□□□□ -1.82
SOX4Q06945 RNU6-748P-201ENST00000384648 107 ntBASIC3.68□□□□□ -1.82
SOX4Q06945 AIMP1P2-201ENST00000425294 312 ntBASIC3.68□□□□□ -1.82
SOX4Q06945 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC3.68□□□□□ -1.82
SOX4Q06945 HMGN2P20-201ENST00000437531 273 ntBASIC3.68□□□□□ -1.82
SOX4Q06945 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC3.68□□□□□ -1.82
SOX4Q06945 AC091179.1-201ENST00000461606 579 ntBASIC3.68□□□□□ -1.82
SOX4Q06945 SNRPGP3-201ENST00000469405 227 ntBASIC3.68□□□□□ -1.82
SOX4Q06945 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.68□□□□□ -1.82
SOX4Q06945 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.68□□□□□ -1.82
SOX4Q06945 AC025281.1-201ENST00000567026 265 ntBASIC3.68□□□□□ -1.82
SOX4Q06945 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC3.68□□□□□ -1.82
SOX4Q06945 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.68□□□□□ -1.82
SOX4Q06945 RNU6-91P-201ENST00000607774 107 ntBASIC3.68□□□□□ -1.82
SOX4Q06945 AC022149.2-201ENST00000621061 203 ntBASIC3.68□□□□□ -1.82
SOX4Q06945 MIR3651-201ENST00000630427 90 ntBASIC3.68□□□□□ -1.82
SOX4Q06945 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
SOX4Q06945 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
SOX4Q06945 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.68□□□□□ -1.82
SOX4Q06945 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
SOX4Q06945 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.68□□□□□ -1.82
SOX4Q06945 MAPK10-373ENST00000641983 6772 ntBASIC3.68□□□□□ -1.82
SOX4Q06945 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
SOX4Q06945 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.67□□□□□ -1.82
SOX4Q06945 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
SOX4Q06945 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
SOX4Q06945 RNU6-1010P-201ENST00000362757 107 ntBASIC3.67□□□□□ -1.82
SOX4Q06945 MIR15B-201ENST00000385045 98 ntBASIC3.67□□□□□ -1.82
SOX4Q06945 RNU6-460P-201ENST00000391158 108 ntBASIC3.67□□□□□ -1.82
SOX4Q06945 AC010154.1-201ENST00000425857 269 ntBASIC3.67□□□□□ -1.82
SOX4Q06945 RPL23AP82-202ENST00000427528 469 ntBASIC3.67□□□□□ -1.82
SOX4Q06945 snoU13.14-201ENST00000459372 104 ntBASIC3.67□□□□□ -1.82
SOX4Q06945 AC092991.1-201ENST00000477176 376 ntBASIC3.67□□□□□ -1.82
SOX4Q06945 RPS27P26-201ENST00000494583 239 ntBASIC3.67□□□□□ -1.82
SOX4Q06945 RNU6-659P-201ENST00000516454 104 ntBASIC3.67□□□□□ -1.82
SOX4Q06945 SNORD19.2-201ENST00000516978 73 ntBASIC3.67□□□□□ -1.82
SOX4Q06945 MIR7112-201ENST00000616126 65 ntBASIC3.67□□□□□ -1.82
SOX4Q06945 AL391516.1-201ENST00000554380 2449 ntBASIC3.67□□□□□ -1.82
SOX4Q06945 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC3.67□□□□□ -1.82
SOX4Q06945 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
SOX4Q06945 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
SOX4Q06945 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
SOX4Q06945 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
SOX4Q06945 ZNF702P-202ENST00000434269 1966 ntBASIC3.66□□□□□ -1.82
SOX4Q06945 Y_RNA.229-201ENST00000364347 113 ntBASIC3.66□□□□□ -1.82
SOX4Q06945 RNU6-1056P-201ENST00000383996 107 ntBASIC3.66□□□□□ -1.82
SOX4Q06945 SNORA67.2-201ENST00000384300 149 ntBASIC3.66□□□□□ -1.82
SOX4Q06945 RNU6-1228P-201ENST00000391014 107 ntBASIC3.66□□□□□ -1.82
SOX4Q06945 AL606845.1-201ENST00000404881 255 ntBASIC3.66□□□□□ -1.82
SOX4Q06945 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.66□□□□□ -1.82
SOX4Q06945 AL365496.1-201ENST00000426885 215 ntBASIC3.66□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 172.4 ms