Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 OOSP1P1-201ENST00000423265 274 ntBASIC3.61□□□□□ -1.83
LIG3P49916 YME1L1P1-201ENST00000429435 297 ntBASIC3.61□□□□□ -1.83
LIG3P49916 AL392103.1-201ENST00000447000 198 ntBASIC3.61□□□□□ -1.83
LIG3P49916 SRIP1-201ENST00000489235 288 ntBASIC3.61□□□□□ -1.83
LIG3P49916 MRPS36P2-201ENST00000512569 299 ntBASIC3.61□□□□□ -1.83
LIG3P49916 RNY3P16-201ENST00000516338 101 ntBASIC3.61□□□□□ -1.83
LIG3P49916 RNU6-789P-201ENST00000517105 102 ntBASIC3.61□□□□□ -1.83
LIG3P49916 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.61□□□□□ -1.83
LIG3P49916 AC010620.2-201ENST00000600135 313 ntBASIC3.61□□□□□ -1.83
LIG3P49916 AC107294.3-201ENST00000609211 526 ntBASIC3.61□□□□□ -1.83
LIG3P49916 AC099778.2-201ENST00000610904 211 ntBASIC3.61□□□□□ -1.83
LIG3P49916 MIR8058-201ENST00000615737 89 ntBASIC3.61□□□□□ -1.83
LIG3P49916 AL365265.1-201ENST00000621045 234 ntBASIC3.61□□□□□ -1.83
LIG3P49916 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
LIG3P49916 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
LIG3P49916 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC3.61□□□□□ -1.83
LIG3P49916 AC068647.1-201ENST00000489539 2265 ntBASIC3.6□□□□□ -1.83
LIG3P49916 RNA5SP383-201ENST00000362934 120 ntBASIC3.6□□□□□ -1.83
LIG3P49916 RNU6-774P-201ENST00000363238 107 ntBASIC3.6□□□□□ -1.83
LIG3P49916 SNORD115-30-201ENST00000364117 82 ntBASIC3.6□□□□□ -1.83
LIG3P49916 Y_RNA.435-201ENST00000384095 112 ntBASIC3.6□□□□□ -1.83
LIG3P49916 MIR218-2-201ENST00000385006 110 ntBASIC3.6□□□□□ -1.83
LIG3P49916 RNU6-493P-201ENST00000391321 108 ntBASIC3.6□□□□□ -1.83
LIG3P49916 AL031003.1-201ENST00000404229 172 ntBASIC3.6□□□□□ -1.83
LIG3P49916 CYCSP4-201ENST00000429682 331 ntBASIC3.6□□□□□ -1.83
LIG3P49916 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC3.6□□□□□ -1.83
LIG3P49916 AC074198.2-201ENST00000508153 258 ntBASIC3.6□□□□□ -1.83
LIG3P49916 SCARNA17.1-201ENST00000516211 143 ntBASIC3.6□□□□□ -1.83
LIG3P49916 SCARNA17.2-201ENST00000516334 143 ntBASIC3.6□□□□□ -1.83
LIG3P49916 SNORA70.18-201ENST00000516696 98 ntBASIC3.6□□□□□ -1.83
LIG3P49916 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.6□□□□□ -1.83
LIG3P49916 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.6□□□□□ -1.83
LIG3P49916 MIR5692C2-201ENST00000577959 77 ntBASIC3.6□□□□□ -1.83
LIG3P49916 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.6□□□□□ -1.83
LIG3P49916 U3.45-201ENST00000607547 219 ntBASIC3.6□□□□□ -1.83
LIG3P49916 AL008718.3-201ENST00000610217 321 ntBASIC3.6□□□□□ -1.83
LIG3P49916 SCARNA17.4-201ENST00000614296 143 ntBASIC3.6□□□□□ -1.83
LIG3P49916 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
LIG3P49916 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
LIG3P49916 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
LIG3P49916 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.6□□□□□ -1.83
LIG3P49916 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.59□□□□□ -1.83
LIG3P49916 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
LIG3P49916 MIR591-201ENST00000385290 95 ntBASIC3.59□□□□□ -1.83
LIG3P49916 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.59□□□□□ -1.83
LIG3P49916 RBMY2UP-201ENST00000453474 324 ntBASIC3.59□□□□□ -1.83
LIG3P49916 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC3.59□□□□□ -1.83
LIG3P49916 RNU5F-4P-201ENST00000516581 114 ntBASIC3.59□□□□□ -1.83
LIG3P49916 RNU6-255P-201ENST00000516957 105 ntBASIC3.59□□□□□ -1.83
LIG3P49916 SCARNA11.3-201ENST00000517276 130 ntBASIC3.59□□□□□ -1.83
LIG3P49916 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC3.59□□□□□ -1.83
LIG3P49916 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
LIG3P49916 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.58□□□□□ -1.84
LIG3P49916 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
LIG3P49916 RNU6-1305P-201ENST00000364353 104 ntBASIC3.58□□□□□ -1.84
LIG3P49916 Y_RNA.240-201ENST00000364469 95 ntBASIC3.58□□□□□ -1.84
LIG3P49916 MIR7-3-201ENST00000384898 110 ntBASIC3.58□□□□□ -1.84
LIG3P49916 MIR586-201ENST00000385035 97 ntBASIC3.58□□□□□ -1.84
LIG3P49916 RNU1-101P-201ENST00000391171 127 ntBASIC3.58□□□□□ -1.84
LIG3P49916 RNU6-710P-201ENST00000410424 105 ntBASIC3.58□□□□□ -1.84
LIG3P49916 DBIP2-201ENST00000419076 262 ntBASIC3.58□□□□□ -1.84
LIG3P49916 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.58□□□□□ -1.84
LIG3P49916 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.58□□□□□ -1.84
LIG3P49916 RNU6-406P-201ENST00000516470 107 ntBASIC3.58□□□□□ -1.84
LIG3P49916 Y_RNA.703-201ENST00000516846 111 ntBASIC3.58□□□□□ -1.84
LIG3P49916 MIR4308-201ENST00000580634 81 ntBASIC3.58□□□□□ -1.84
LIG3P49916 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.58□□□□□ -1.84
LIG3P49916 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
LIG3P49916 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
LIG3P49916 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
LIG3P49916 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
LIG3P49916 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
LIG3P49916 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3.57□□□□□ -1.84
LIG3P49916 MAPK10-322ENST00000641485 4530 ntBASIC3.57□□□□□ -1.84
LIG3P49916 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
LIG3P49916 RNU6-653P-201ENST00000363074 106 ntBASIC3.57□□□□□ -1.84
LIG3P49916 Y_RNA.243-201ENST00000364481 109 ntBASIC3.57□□□□□ -1.84
LIG3P49916 AC021205.2-201ENST00000480069 347 ntBASIC3.57□□□□□ -1.84
LIG3P49916 RN7SL293P-201ENST00000481765 281 ntBASIC3.57□□□□□ -1.84
LIG3P49916 RNU6-1278P-201ENST00000516130 107 ntBASIC3.57□□□□□ -1.84
LIG3P49916 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC3.57□□□□□ -1.84
LIG3P49916 AC245166.1-201ENST00000521012 253 ntBASIC3.57□□□□□ -1.84
LIG3P49916 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC3.57□□□□□ -1.84
LIG3P49916 AC091564.4-201ENST00000533934 2194 ntBASIC3.57□□□□□ -1.84
LIG3P49916 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC3.57□□□□□ -1.84
LIG3P49916 AC019176.2-201ENST00000611579 315 ntBASIC3.57□□□□□ -1.84
LIG3P49916 AC002064.3-201ENST00000623448 346 ntBASIC3.57□□□□□ -1.84
LIG3P49916 SNORA50A-202ENST00000629536 136 ntBASIC3.57□□□□□ -1.84
LIG3P49916 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC3.57□□□□□ -1.84
LIG3P49916 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.56□□□□□ -1.84
LIG3P49916 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC3.56□□□□□ -1.84
LIG3P49916 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.56□□□□□ -1.84
LIG3P49916 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.56□□□□□ -1.84
LIG3P49916 DYNLT3P1-201ENST00000378574 347 ntBASIC3.56□□□□□ -1.84
LIG3P49916 MIR548B-201ENST00000385247 97 ntBASIC3.56□□□□□ -1.84
LIG3P49916 AL357139.1-201ENST00000407792 426 ntBASIC3.56□□□□□ -1.84
LIG3P49916 MIR1294-201ENST00000408503 142 ntBASIC3.56□□□□□ -1.84
LIG3P49916 RN7SKP51-201ENST00000410781 304 ntBASIC3.56□□□□□ -1.84
LIG3P49916 AL139281.1-201ENST00000422120 335 ntBASIC3.56□□□□□ -1.84
LIG3P49916 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC3.56□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 103.8 ms