Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 RNU6-121P-201ENST00000410525 99 ntBASIC2.47□□□□□ -2.01
SOX2P48431 CBX3P6-201ENST00000430257 527 ntBASIC2.47□□□□□ -2.01
SOX2P48431 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC2.47□□□□□ -2.01
SOX2P48431 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.47□□□□□ -2.01
SOX2P48431 RPL26P26-201ENST00000480251 434 ntBASIC2.47□□□□□ -2.01
SOX2P48431 RN7SL504P-201ENST00000494496 287 ntBASIC2.47□□□□□ -2.01
SOX2P48431 CKS1BP2-201ENST00000497342 240 ntBASIC2.47□□□□□ -2.01
SOX2P48431 AC083906.5-201ENST00000503722 328 ntBASIC2.47□□□□□ -2.01
SOX2P48431 SCGB1D5P-201ENST00000515134 247 ntBASIC2.47□□□□□ -2.01
SOX2P48431 RNU6-344P-201ENST00000516635 111 ntBASIC2.47□□□□□ -2.01
SOX2P48431 DEFB131C-201ENST00000528817 165 ntBASIC2.47□□□□□ -2.01
SOX2P48431 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC2.47□□□□□ -2.01
SOX2P48431 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC2.47□□□□□ -2.01
SOX2P48431 RRN3P3-201ENST00000549207 578 ntBASIC2.47□□□□□ -2.01
SOX2P48431 AC233702.2-202ENST00000562547 291 ntBASIC2.47□□□□□ -2.01
SOX2P48431 MIR4300-201ENST00000581016 96 ntBASIC2.47□□□□□ -2.01
SOX2P48431 SNORD11B-201ENST00000607707 90 ntBASIC2.47□□□□□ -2.01
SOX2P48431 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC2.47□□□□□ -2.01
SOX2P48431 AL357075.2-201ENST00000614906 189 ntBASIC2.47□□□□□ -2.01
SOX2P48431 MIR7975-201ENST00000619350 68 ntBASIC2.47□□□□□ -2.01
SOX2P48431 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.47□□□□□ -2.01
SOX2P48431 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
SOX2P48431 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
SOX2P48431 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.46□□□□□ -2.02
SOX2P48431 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
SOX2P48431 SNORA63.1-201ENST00000362493 131 ntBASIC2.46□□□□□ -2.02
SOX2P48431 Y_RNA.376-201ENST00000365638 108 ntBASIC2.46□□□□□ -2.02
SOX2P48431 Y_RNA.396-201ENST00000383949 103 ntBASIC2.46□□□□□ -2.02
SOX2P48431 Y_RNA.462-201ENST00000384268 102 ntBASIC2.46□□□□□ -2.02
SOX2P48431 RNU6-937P-201ENST00000384325 106 ntBASIC2.46□□□□□ -2.02
SOX2P48431 RNU6-505P-201ENST00000384427 107 ntBASIC2.46□□□□□ -2.02
SOX2P48431 MIR7-3-201ENST00000384898 110 ntBASIC2.46□□□□□ -2.02
SOX2P48431 MIR627-201ENST00000384979 97 ntBASIC2.46□□□□□ -2.02
SOX2P48431 SNORA11.1-201ENST00000408133 129 ntBASIC2.46□□□□□ -2.02
SOX2P48431 RNU2-20P-201ENST00000410425 191 ntBASIC2.46□□□□□ -2.02
SOX2P48431 RNA5SP120-201ENST00000410900 112 ntBASIC2.46□□□□□ -2.02
SOX2P48431 RPL21P38-201ENST00000418090 167 ntBASIC2.46□□□□□ -2.02
SOX2P48431 YME1L1P1-201ENST00000429435 297 ntBASIC2.46□□□□□ -2.02
SOX2P48431 AC005002.2-201ENST00000438228 269 ntBASIC2.46□□□□□ -2.02
SOX2P48431 TRAPPC2P8-201ENST00000440676 396 ntBASIC2.46□□□□□ -2.02
SOX2P48431 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.46□□□□□ -2.02
SOX2P48431 PRSS3P4-201ENST00000453323 162 ntBASIC2.46□□□□□ -2.02
SOX2P48431 CYP2C59P-201ENST00000457790 269 ntBASIC2.46□□□□□ -2.02
SOX2P48431 AC090515.1-201ENST00000465295 476 ntBASIC2.46□□□□□ -2.02
SOX2P48431 APOA2-205ENST00000468465 421 ntTSL 2 BASIC2.46□□□□□ -2.02
SOX2P48431 RN7SKP40-201ENST00000517211 242 ntBASIC2.46□□□□□ -2.02
SOX2P48431 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC2.46□□□□□ -2.02
SOX2P48431 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC2.46□□□□□ -2.02
SOX2P48431 MIR3616-201ENST00000584070 92 ntBASIC2.46□□□□□ -2.02
SOX2P48431 ZNF861P-201ENST00000588126 639 ntBASIC2.46□□□□□ -2.02
SOX2P48431 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.46□□□□□ -2.02
SOX2P48431 AC006006.1-201ENST00000603082 144 ntBASIC2.46□□□□□ -2.02
SOX2P48431 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.46□□□□□ -2.02
SOX2P48431 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC2.46□□□□□ -2.02
SOX2P48431 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.46□□□□□ -2.02
SOX2P48431 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.45□□□□□ -2.02
SOX2P48431 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC2.45□□□□□ -2.02
SOX2P48431 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
SOX2P48431 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.45□□□□□ -2.02
SOX2P48431 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
SOX2P48431 RNU6-626P-201ENST00000363354 107 ntBASIC2.45□□□□□ -2.02
SOX2P48431 RNU6-961P-201ENST00000363893 105 ntBASIC2.45□□□□□ -2.02
SOX2P48431 RNU6-944P-201ENST00000364023 107 ntBASIC2.45□□□□□ -2.02
SOX2P48431 RNU6-461P-201ENST00000364195 107 ntBASIC2.45□□□□□ -2.02
SOX2P48431 Y_RNA.288-201ENST00000364854 92 ntBASIC2.45□□□□□ -2.02
SOX2P48431 SNORD63-201ENST00000384262 68 ntBASIC2.45□□□□□ -2.02
SOX2P48431 Y_RNA.498-201ENST00000384460 102 ntBASIC2.45□□□□□ -2.02
SOX2P48431 Y_RNA.618-201ENST00000410949 107 ntBASIC2.45□□□□□ -2.02
SOX2P48431 RNU5A-5P-201ENST00000411054 116 ntBASIC2.45□□□□□ -2.02
SOX2P48431 AC004866.1-201ENST00000411748 78 ntBASIC2.45□□□□□ -2.02
SOX2P48431 AC096920.1-201ENST00000423991 241 ntBASIC2.45□□□□□ -2.02
SOX2P48431 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.45□□□□□ -2.02
SOX2P48431 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC2.45□□□□□ -2.02
SOX2P48431 RNU6-625P-201ENST00000459412 107 ntBASIC2.45□□□□□ -2.02
SOX2P48431 RPS23P5-201ENST00000495419 428 ntBASIC2.45□□□□□ -2.02
SOX2P48431 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.45□□□□□ -2.02
SOX2P48431 Y_RNA.668-201ENST00000516233 93 ntBASIC2.45□□□□□ -2.02
SOX2P48431 RNU5F-4P-201ENST00000516581 114 ntBASIC2.45□□□□□ -2.02
SOX2P48431 RNU6-570P-201ENST00000517051 105 ntBASIC2.45□□□□□ -2.02
SOX2P48431 AC018448.1-201ENST00000552843 316 ntBASIC2.45□□□□□ -2.02
SOX2P48431 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC2.45□□□□□ -2.02
SOX2P48431 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC2.45□□□□□ -2.02
SOX2P48431 MIR3605-201ENST00000583214 100 ntBASIC2.45□□□□□ -2.02
SOX2P48431 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC2.45□□□□□ -2.02
SOX2P48431 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC2.45□□□□□ -2.02
SOX2P48431 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC2.45□□□□□ -2.02
SOX2P48431 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC2.45□□□□□ -2.02
SOX2P48431 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.44□□□□□ -2.02
SOX2P48431 Y_RNA.230-201ENST00000364348 109 ntBASIC2.44□□□□□ -2.02
SOX2P48431 RNA5SP240-201ENST00000365355 128 ntBASIC2.44□□□□□ -2.02
SOX2P48431 RNU6-20P-201ENST00000384106 107 ntBASIC2.44□□□□□ -2.02
SOX2P48431 RNU6-472P-201ENST00000384299 107 ntBASIC2.44□□□□□ -2.02
SOX2P48431 RNU2-25P-201ENST00000411041 191 ntBASIC2.44□□□□□ -2.02
SOX2P48431 AL161788.1-201ENST00000441805 169 ntBASIC2.44□□□□□ -2.02
SOX2P48431 RPL39P40-201ENST00000445481 146 ntBASIC2.44□□□□□ -2.02
SOX2P48431 TRBVB-201ENST00000477100 408 ntBASIC2.44□□□□□ -2.02
SOX2P48431 RN7SL499P-201ENST00000481141 276 ntBASIC2.44□□□□□ -2.02
SOX2P48431 AC098869.1-201ENST00000481627 292 ntBASIC2.44□□□□□ -2.02
SOX2P48431 AC091826.1-201ENST00000514065 313 ntBASIC2.44□□□□□ -2.02
SOX2P48431 RPPH1-2P-201ENST00000516688 293 ntBASIC2.44□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 141.3 ms