Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 HMGN1P7-201ENST00000491722 313 ntBASIC4.49□□□□□ -1.69
COL9A1P20849 AC091826.1-201ENST00000514065 313 ntBASIC4.49□□□□□ -1.69
COL9A1P20849 RNU2-13P-201ENST00000515909 113 ntBASIC4.49□□□□□ -1.69
COL9A1P20849 Y_RNA.666-201ENST00000516187 112 ntBASIC4.49□□□□□ -1.69
COL9A1P20849 HOTTIP_4.1-201ENST00000618195 165 ntBASIC4.49□□□□□ -1.69
COL9A1P20849 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC4.49□□□□□ -1.69
COL9A1P20849 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC4.49□□□□□ -1.69
COL9A1P20849 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC4.49□□□□□ -1.69
COL9A1P20849 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC4.49□□□□□ -1.69
COL9A1P20849 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
COL9A1P20849 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC4.49□□□□□ -1.69
COL9A1P20849 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
COL9A1P20849 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC4.49□□□□□ -1.69
COL9A1P20849 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
COL9A1P20849 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
COL9A1P20849 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
COL9A1P20849 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
COL9A1P20849 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
COL9A1P20849 RNA5SP167-201ENST00000365461 116 ntBASIC4.48□□□□□ -1.69
COL9A1P20849 Y_RNA.410-201ENST00000383992 113 ntBASIC4.48□□□□□ -1.69
COL9A1P20849 AC016909.1-201ENST00000415916 166 ntBASIC4.48□□□□□ -1.69
COL9A1P20849 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC4.48□□□□□ -1.69
COL9A1P20849 AC012671.1-201ENST00000451912 203 ntBASIC4.48□□□□□ -1.69
COL9A1P20849 RNU6-1096P-201ENST00000517089 102 ntBASIC4.48□□□□□ -1.69
COL9A1P20849 SUMO2P16-201ENST00000519475 264 ntBASIC4.48□□□□□ -1.69
COL9A1P20849 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC4.48□□□□□ -1.69
COL9A1P20849 AC008507.4-201ENST00000585464 127 ntBASIC4.48□□□□□ -1.69
COL9A1P20849 AC087685.1-201ENST00000587507 141 ntBASIC4.48□□□□□ -1.69
COL9A1P20849 AL031595.2-201ENST00000624215 19071 ntBASIC4.48□□□□□ -1.69
COL9A1P20849 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.48□□□□□ -1.69
COL9A1P20849 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
COL9A1P20849 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC4.47□□□□□ -1.69
COL9A1P20849 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL9A1P20849 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC4.47□□□□□ -1.69
COL9A1P20849 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
COL9A1P20849 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL9A1P20849 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
COL9A1P20849 RNU6-349P-201ENST00000362402 107 ntBASIC4.47□□□□□ -1.69
COL9A1P20849 RNA5SP187-201ENST00000384400 119 ntBASIC4.47□□□□□ -1.69
COL9A1P20849 U8.17-201ENST00000391292 132 ntBASIC4.47□□□□□ -1.69
COL9A1P20849 HMGN2P27-201ENST00000427352 270 ntBASIC4.47□□□□□ -1.69
COL9A1P20849 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC4.47□□□□□ -1.69
COL9A1P20849 RPL32P34-201ENST00000486380 400 ntBASIC4.47□□□□□ -1.69
COL9A1P20849 MIR449C-201ENST00000516047 92 ntBASIC4.47□□□□□ -1.69
COL9A1P20849 RNU6-1231P-201ENST00000517185 103 ntBASIC4.47□□□□□ -1.69
COL9A1P20849 AC004486.1-201ENST00000546846 233 ntBASIC4.47□□□□□ -1.69
COL9A1P20849 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC4.47□□□□□ -1.69
COL9A1P20849 AC007229.1-201ENST00000590455 412 ntBASIC4.47□□□□□ -1.69
COL9A1P20849 AC013412.1-201ENST00000610687 192 ntBASIC4.47□□□□□ -1.69
COL9A1P20849 MIR6076-201ENST00000617521 113 ntBASIC4.47□□□□□ -1.69
COL9A1P20849 MIR6500-201ENST00000622700 86 ntBASIC4.47□□□□□ -1.69
COL9A1P20849 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL9A1P20849 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL9A1P20849 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL9A1P20849 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC4.47□□□□□ -1.69
COL9A1P20849 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
COL9A1P20849 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.47□□□□□ -1.69
COL9A1P20849 AL133412.1-201ENST00000380194 2992 ntBASIC4.47□□□□□ -1.69
COL9A1P20849 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC4.46□□□□□ -1.69
COL9A1P20849 UBE3AP2-201ENST00000429033 2259 ntBASIC4.46□□□□□ -1.7
COL9A1P20849 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC4.46□□□□□ -1.7
COL9A1P20849 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
COL9A1P20849 RNU6-816P-201ENST00000390914 107 ntBASIC4.46□□□□□ -1.7
COL9A1P20849 RNU6-1268P-201ENST00000391214 107 ntBASIC4.46□□□□□ -1.7
COL9A1P20849 RNU6-1239P-201ENST00000391310 107 ntBASIC4.46□□□□□ -1.7
COL9A1P20849 TRBV25OR9-2-201ENST00000438417 374 ntBASIC4.46□□□□□ -1.7
COL9A1P20849 AP000873.1-201ENST00000463987 400 ntBASIC4.46□□□□□ -1.7
COL9A1P20849 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
COL9A1P20849 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.7
COL9A1P20849 ZNF720P1-201ENST00000562403 1939 ntBASIC4.46□□□□□ -1.7
COL9A1P20849 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC4.46□□□□□ -1.7
COL9A1P20849 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.46□□□□□ -1.7
COL9A1P20849 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.46□□□□□ -1.7
COL9A1P20849 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
COL9A1P20849 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC4.45□□□□□ -1.7
COL9A1P20849 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
COL9A1P20849 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
COL9A1P20849 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC4.45□□□□□ -1.7
COL9A1P20849 RNU6-497P-201ENST00000365316 104 ntBASIC4.45□□□□□ -1.7
COL9A1P20849 Y_RNA.621-201ENST00000411065 96 ntBASIC4.45□□□□□ -1.7
COL9A1P20849 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC4.45□□□□□ -1.7
COL9A1P20849 SNRPGP10-201ENST00000432323 225 ntBASIC4.45□□□□□ -1.7
COL9A1P20849 RNU7-164P-201ENST00000459221 62 ntBASIC4.45□□□□□ -1.7
COL9A1P20849 RN7SL691P-201ENST00000494487 301 ntBASIC4.45□□□□□ -1.7
COL9A1P20849 RNA5SP49-201ENST00000516450 115 ntBASIC4.45□□□□□ -1.7
COL9A1P20849 RNU6ATAC12P-201ENST00000516542 115 ntBASIC4.45□□□□□ -1.7
COL9A1P20849 RNA5SP230-201ENST00000517039 122 ntBASIC4.45□□□□□ -1.7
COL9A1P20849 MIR3945-201ENST00000581853 98 ntBASIC4.45□□□□□ -1.7
COL9A1P20849 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL9A1P20849 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL9A1P20849 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
COL9A1P20849 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC4.44□□□□□ -1.7
COL9A1P20849 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC4.44□□□□□ -1.7
COL9A1P20849 AC011266.1-201ENST00000624119 3569 ntBASIC4.44□□□□□ -1.7
COL9A1P20849 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL9A1P20849 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL9A1P20849 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
COL9A1P20849 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL9A1P20849 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL9A1P20849 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC4.44□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 102.4 ms