Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC2.19□□□□□ -2.06
MSH3P20585 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC2.19□□□□□ -2.06
MSH3P20585 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC2.19□□□□□ -2.06
MSH3P20585 AL355802.3-201ENST00000607571 545 ntBASIC2.19□□□□□ -2.06
MSH3P20585 AC100812.1-201ENST00000607622 580 ntBASIC2.19□□□□□ -2.06
MSH3P20585 PCGEM1.1-201ENST00000613431 131 ntBASIC2.19□□□□□ -2.06
MSH3P20585 AC009831.4-201ENST00000620744 325 ntBASIC2.19□□□□□ -2.06
MSH3P20585 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.19□□□□□ -2.06
MSH3P20585 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.18□□□□□ -2.06
MSH3P20585 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
MSH3P20585 Y_RNA.132-201ENST00000363421 102 ntBASIC2.18□□□□□ -2.06
MSH3P20585 RNU6-1032P-201ENST00000384100 107 ntBASIC2.18□□□□□ -2.06
MSH3P20585 Y_RNA.445-201ENST00000384168 102 ntBASIC2.18□□□□□ -2.06
MSH3P20585 RNU6-378P-201ENST00000384324 107 ntBASIC2.18□□□□□ -2.06
MSH3P20585 MIR487A-201ENST00000385009 80 ntBASIC2.18□□□□□ -2.06
MSH3P20585 MIR153-2-201ENST00000385225 87 ntBASIC2.18□□□□□ -2.06
MSH3P20585 MIR548P-201ENST00000408336 84 ntBASIC2.18□□□□□ -2.06
MSH3P20585 HMGB3P2-201ENST00000411913 584 ntBASIC2.18□□□□□ -2.06
MSH3P20585 Z98742.3-201ENST00000418637 326 ntBASIC2.18□□□□□ -2.06
MSH3P20585 AC007098.1-201ENST00000420122 367 ntBASIC2.18□□□□□ -2.06
MSH3P20585 IFNA11P-201ENST00000446352 526 ntBASIC2.18□□□□□ -2.06
MSH3P20585 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC2.18□□□□□ -2.06
MSH3P20585 TOMM22P6-201ENST00000465035 409 ntBASIC2.18□□□□□ -2.06
MSH3P20585 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC2.18□□□□□ -2.06
MSH3P20585 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC2.18□□□□□ -2.06
MSH3P20585 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC2.18□□□□□ -2.06
MSH3P20585 Y_RNA.661-201ENST00000516003 99 ntBASIC2.18□□□□□ -2.06
MSH3P20585 RNA5SP200-201ENST00000516360 103 ntBASIC2.18□□□□□ -2.06
MSH3P20585 Y_RNA.706-201ENST00000516933 99 ntBASIC2.18□□□□□ -2.06
MSH3P20585 Y_RNA.711-201ENST00000516993 102 ntBASIC2.18□□□□□ -2.06
MSH3P20585 SNORD116.3-201ENST00000517176 78 ntBASIC2.18□□□□□ -2.06
MSH3P20585 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC2.18□□□□□ -2.06
MSH3P20585 MIR3171-201ENST00000584270 74 ntBASIC2.18□□□□□ -2.06
MSH3P20585 AL670379.2-201ENST00000604983 252 ntBASIC2.18□□□□□ -2.06
MSH3P20585 MIR1244-1-201ENST00000612829 85 ntBASIC2.18□□□□□ -2.06
MSH3P20585 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.18□□□□□ -2.06
MSH3P20585 AC087588.2-201ENST00000617667 426 ntBASIC2.18□□□□□ -2.06
MSH3P20585 MIR1244-3-201ENST00000635744 85 ntBASIC2.18□□□□□ -2.06
MSH3P20585 MIR1244-2-201ENST00000636449 85 ntBASIC2.18□□□□□ -2.06
MSH3P20585 MIR1244-4-202ENST00000636813 85 ntBASIC2.18□□□□□ -2.06
MSH3P20585 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.18□□□□□ -2.06
MSH3P20585 MTND5P6-201ENST00000422338 1798 ntBASIC2.18□□□□□ -2.06
MSH3P20585 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.17□□□□□ -2.06
MSH3P20585 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC2.17□□□□□ -2.06
MSH3P20585 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC2.17□□□□□ -2.06
MSH3P20585 Y_RNA.28-201ENST00000362554 111 ntBASIC2.17□□□□□ -2.06
MSH3P20585 Y_RNA.106-201ENST00000363189 100 ntBASIC2.17□□□□□ -2.06
MSH3P20585 SNORD115-8-201ENST00000363856 82 ntBASIC2.17□□□□□ -2.06
MSH3P20585 SNORD115-38-201ENST00000365037 82 ntBASIC2.17□□□□□ -2.06
MSH3P20585 RNU6-1274P-201ENST00000384557 107 ntBASIC2.17□□□□□ -2.06
MSH3P20585 MIR29B2-201ENST00000385055 81 ntBASIC2.17□□□□□ -2.06
MSH3P20585 RNU6-308P-201ENST00000390957 107 ntBASIC2.17□□□□□ -2.06
MSH3P20585 SNORA46.1-201ENST00000391069 153 ntBASIC2.17□□□□□ -2.06
MSH3P20585 SNORA48.3-201ENST00000391081 134 ntBASIC2.17□□□□□ -2.06
MSH3P20585 RNU6-1093P-201ENST00000391194 107 ntBASIC2.17□□□□□ -2.06
MSH3P20585 MIR208B-201ENST00000401172 77 ntBASIC2.17□□□□□ -2.06
MSH3P20585 RNA5SP425-201ENST00000410336 112 ntBASIC2.17□□□□□ -2.06
MSH3P20585 AC092423.1-201ENST00000430165 186 ntBASIC2.17□□□□□ -2.06
MSH3P20585 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC2.17□□□□□ -2.06
MSH3P20585 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC2.17□□□□□ -2.06
MSH3P20585 RNU7-4P-201ENST00000516961 62 ntBASIC2.17□□□□□ -2.06
MSH3P20585 EIF4A1P12-201ENST00000551910 141 ntBASIC2.17□□□□□ -2.06
MSH3P20585 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC2.17□□□□□ -2.06
MSH3P20585 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC2.17□□□□□ -2.06
MSH3P20585 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.17□□□□□ -2.06
MSH3P20585 MIR5739-201ENST00000619803 80 ntBASIC2.17□□□□□ -2.06
MSH3P20585 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.17□□□□□ -2.06
MSH3P20585 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
MSH3P20585 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.16□□□□□ -2.06
MSH3P20585 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
MSH3P20585 RNU6-137P-201ENST00000363680 108 ntBASIC2.16□□□□□ -2.06
MSH3P20585 SNORD32B-201ENST00000364460 84 ntBASIC2.16□□□□□ -2.06
MSH3P20585 RNU1-115P-201ENST00000365329 160 ntBASIC2.16□□□□□ -2.06
MSH3P20585 RNA5SP37-201ENST00000365420 130 ntBASIC2.16□□□□□ -2.06
MSH3P20585 Y_RNA.364-201ENST00000365532 101 ntBASIC2.16□□□□□ -2.06
MSH3P20585 RNY1P14-201ENST00000384426 108 ntBASIC2.16□□□□□ -2.06
MSH3P20585 MIR625-201ENST00000385047 85 ntBASIC2.16□□□□□ -2.06
MSH3P20585 MIR95-201ENST00000385072 81 ntBASIC2.16□□□□□ -2.06
MSH3P20585 SNORA11.4-201ENST00000408823 129 ntBASIC2.16□□□□□ -2.06
MSH3P20585 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.16□□□□□ -2.06
MSH3P20585 CEP57L1P1-201ENST00000430943 1201 ntBASIC2.16□□□□□ -2.06
MSH3P20585 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC2.16□□□□□ -2.06
MSH3P20585 MTND4P19-201ENST00000446659 478 ntBASIC2.16□□□□□ -2.06
MSH3P20585 AC007215.1-201ENST00000464893 276 ntBASIC2.16□□□□□ -2.06
MSH3P20585 RNU6-58P-201ENST00000517143 103 ntBASIC2.16□□□□□ -2.06
MSH3P20585 RNU6-586P-201ENST00000517265 104 ntBASIC2.16□□□□□ -2.06
MSH3P20585 CBX3P7-201ENST00000532876 502 ntBASIC2.16□□□□□ -2.06
MSH3P20585 AC027288.2-201ENST00000553028 243 ntBASIC2.16□□□□□ -2.06
MSH3P20585 AC091544.4-201ENST00000555268 342 ntBASIC2.16□□□□□ -2.06
MSH3P20585 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC2.16□□□□□ -2.06
MSH3P20585 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC2.16□□□□□ -2.06
MSH3P20585 AC138305.3-201ENST00000624988 240 ntBASIC2.16□□□□□ -2.06
MSH3P20585 AC090517.3-201ENST00000625170 141 ntBASIC2.16□□□□□ -2.06
MSH3P20585 ZNF658B-202ENST00000615961 3375 ntBASIC2.15□□□□□ -2.06
MSH3P20585 U3.9-201ENST00000363823 204 ntBASIC2.15□□□□□ -2.07
MSH3P20585 Y_RNA.216-201ENST00000364205 93 ntBASIC2.15□□□□□ -2.07
MSH3P20585 Y_RNA.314-201ENST00000365114 102 ntBASIC2.15□□□□□ -2.07
MSH3P20585 SNORA51.11-201ENST00000384442 131 ntBASIC2.15□□□□□ -2.07
MSH3P20585 SNORA3.2-201ENST00000408221 125 ntBASIC2.15□□□□□ -2.07
MSH3P20585 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC2.15□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 96.5 ms