Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AL606517.2-201ENST00000442855 241 ntBASIC-0.84□□□□□ -2.54
CCDC88BA6NC98 AC093019.1-201ENST00000443135 252 ntBASIC-0.84□□□□□ -2.54
CCDC88BA6NC98 RNU7-165P-201ENST00000458864 60 ntBASIC-0.84□□□□□ -2.54
CCDC88BA6NC98 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC-0.84□□□□□ -2.54
CCDC88BA6NC98 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC-0.84□□□□□ -2.54
CCDC88BA6NC98 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC-0.84□□□□□ -2.54
CCDC88BA6NC98 MIR3666-201ENST00000607845 111 ntBASIC-0.84□□□□□ -2.54
CCDC88BA6NC98 AL359697.1-201ENST00000624879 587 ntBASIC-0.84□□□□□ -2.54
CCDC88BA6NC98 MTND4P4-201ENST00000439033 1366 ntBASIC-0.84□□□□□ -2.54
CCDC88BA6NC98 SNORA33-201ENST00000363664 130 ntBASIC-0.85□□□□□ -2.55
CCDC88BA6NC98 RNU6-166P-201ENST00000384371 107 ntBASIC-0.85□□□□□ -2.55
CCDC88BA6NC98 RNU6-114P-201ENST00000384704 105 ntBASIC-0.85□□□□□ -2.55
CCDC88BA6NC98 SNORA40C-201ENST00000391285 128 ntBASIC-0.85□□□□□ -2.55
CCDC88BA6NC98 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC-0.85□□□□□ -2.55
CCDC88BA6NC98 MIR548H2-201ENST00000408874 88 ntBASIC-0.85□□□□□ -2.55
CCDC88BA6NC98 MTCO2P8-201ENST00000412213 658 ntBASIC-0.85□□□□□ -2.55
CCDC88BA6NC98 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC-0.85□□□□□ -2.55
CCDC88BA6NC98 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC-0.85□□□□□ -2.55
CCDC88BA6NC98 AC091021.1-201ENST00000468051 388 ntBASIC-0.85□□□□□ -2.55
CCDC88BA6NC98 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC-0.85□□□□□ -2.55
CCDC88BA6NC98 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC-0.85□□□□□ -2.55
CCDC88BA6NC98 RNU6-440P-201ENST00000390882 105 ntBASIC-0.86□□□□□ -2.55
CCDC88BA6NC98 RNU6-575P-201ENST00000411326 105 ntBASIC-0.86□□□□□ -2.55
CCDC88BA6NC98 TIMM9P3-201ENST00000428659 274 ntBASIC-0.86□□□□□ -2.55
CCDC88BA6NC98 MTND4P25-201ENST00000441039 533 ntBASIC-0.86□□□□□ -2.55
CCDC88BA6NC98 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC-0.86□□□□□ -2.55
CCDC88BA6NC98 AL390123.1-201ENST00000603216 237 ntBASIC-0.86□□□□□ -2.55
CCDC88BA6NC98 AC004832.4-201ENST00000608952 331 ntBASIC-0.86□□□□□ -2.55
CCDC88BA6NC98 AC096586.1-201ENST00000610267 561 ntBASIC-0.86□□□□□ -2.55
CCDC88BA6NC98 AP000484.1-201ENST00000620067 1252 ntBASIC-0.86□□□□□ -2.55
CCDC88BA6NC98 MIR8054-201ENST00000620877 86 ntBASIC-0.86□□□□□ -2.55
CCDC88BA6NC98 AC098679.4-201ENST00000624241 654 ntBASIC-0.86□□□□□ -2.55
CCDC88BA6NC98 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC-0.86□□□□□ -2.55
CCDC88BA6NC98 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC-0.86□□□□□ -2.55
CCDC88BA6NC98 AC026410.2-201ENST00000460281 156 ntBASIC-0.86□□□□□ -2.55
CCDC88BA6NC98 AC013828.2-201ENST00000532487 235 ntBASIC-0.86□□□□□ -2.55
CCDC88BA6NC98 AC103810.2-203ENST00000584959 631 ntTSL 5 BASIC-0.86□□□□□ -2.55
CCDC88BA6NC98 AL121992.2-201ENST00000606262 256 ntBASIC-0.86□□□□□ -2.55
CCDC88BA6NC98 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC-0.86□□□□□ -2.55
CCDC88BA6NC98 MIR6755-201ENST00000619993 66 ntBASIC-0.86□□□□□ -2.55
CCDC88BA6NC98 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC-0.86□□□□□ -2.55
CCDC88BA6NC98 MIR499B-201ENST00000636498 73 ntBASIC-0.86□□□□□ -2.55
CCDC88BA6NC98 RNU4-15P-201ENST00000362613 141 ntBASIC-0.87□□□□□ -2.55
CCDC88BA6NC98 SNORD31B-201ENST00000364977 69 ntBASIC-0.87□□□□□ -2.55
CCDC88BA6NC98 Y_RNA.362-201ENST00000365518 110 ntBASIC-0.87□□□□□ -2.55
CCDC88BA6NC98 RNU6-269P-201ENST00000391077 97 ntBASIC-0.87□□□□□ -2.55
CCDC88BA6NC98 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC-0.87□□□□□ -2.55
CCDC88BA6NC98 AC069271.1-201ENST00000445577 156 ntBASIC-0.87□□□□□ -2.55
CCDC88BA6NC98 AL163973.1-201ENST00000484753 577 ntBASIC-0.87□□□□□ -2.55
CCDC88BA6NC98 RNA5SP135-201ENST00000517019 125 ntBASIC-0.87□□□□□ -2.55
CCDC88BA6NC98 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC-0.87□□□□□ -2.55
CCDC88BA6NC98 AC010376.1-201ENST00000522101 334 ntBASIC-0.87□□□□□ -2.55
CCDC88BA6NC98 AC023538.1-201ENST00000534576 736 ntBASIC-0.87□□□□□ -2.55
CCDC88BA6NC98 AL355297.3-201ENST00000604082 446 ntBASIC-0.87□□□□□ -2.55
CCDC88BA6NC98 RNU6-932P-201ENST00000391108 106 ntBASIC-0.88□□□□□ -2.55
CCDC88BA6NC98 RNA5SP467-201ENST00000391274 118 ntBASIC-0.88□□□□□ -2.55
CCDC88BA6NC98 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC-0.88□□□□□ -2.55
CCDC88BA6NC98 MRPS10P2-201ENST00000431226 381 ntBASIC-0.88□□□□□ -2.55
CCDC88BA6NC98 GXYLT1P1-201ENST00000446657 490 ntBASIC-0.88□□□□□ -2.55
CCDC88BA6NC98 AC087499.4-201ENST00000448505 178 ntBASIC-0.88□□□□□ -2.55
CCDC88BA6NC98 RNU4-49P-201ENST00000516080 140 ntBASIC-0.88□□□□□ -2.55
CCDC88BA6NC98 RNU6-714P-201ENST00000516963 103 ntBASIC-0.88□□□□□ -2.55
CCDC88BA6NC98 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC-0.88□□□□□ -2.55
CCDC88BA6NC98 AC023824.3-201ENST00000569003 562 ntBASIC-0.88□□□□□ -2.55
CCDC88BA6NC98 SNORD56.1-201ENST00000362913 68 ntBASIC-0.89□□□□□ -2.55
CCDC88BA6NC98 MIR1185-1-201ENST00000408598 86 ntBASIC-0.89□□□□□ -2.55
CCDC88BA6NC98 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC-0.89□□□□□ -2.55
CCDC88BA6NC98 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC-0.89□□□□□ -2.55
CCDC88BA6NC98 MTCO3P43-201ENST00000440974 771 ntBASIC-0.89□□□□□ -2.55
CCDC88BA6NC98 TPT1P7-201ENST00000458300 517 ntBASIC-0.89□□□□□ -2.55
CCDC88BA6NC98 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC-0.89□□□□□ -2.55
CCDC88BA6NC98 AC114755.3-201ENST00000481111 251 ntBASIC-0.89□□□□□ -2.55
CCDC88BA6NC98 RNU5F-4P-201ENST00000516581 114 ntBASIC-0.89□□□□□ -2.55
CCDC88BA6NC98 AC027288.2-201ENST00000553028 243 ntBASIC-0.89□□□□□ -2.55
CCDC88BA6NC98 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC-0.89□□□□□ -2.55
CCDC88BA6NC98 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC-0.89□□□□□ -2.55
CCDC88BA6NC98 AC091946.2-201ENST00000606105 291 ntBASIC-0.89□□□□□ -2.55
CCDC88BA6NC98 AL359075.3-201ENST00000613288 217 ntBASIC-0.89□□□□□ -2.55
CCDC88BA6NC98 AL391099.1-201ENST00000624635 187 ntBASIC-0.89□□□□□ -2.55
CCDC88BA6NC98 Y_RNA.234-201ENST00000364409 97 ntBASIC-0.9□□□□□ -2.55
CCDC88BA6NC98 RNU6-417P-201ENST00000384712 107 ntBASIC-0.9□□□□□ -2.55
CCDC88BA6NC98 AL663109.1-201ENST00000411498 844 ntBASIC-0.9□□□□□ -2.55
CCDC88BA6NC98 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC-0.9□□□□□ -2.55
CCDC88BA6NC98 COX7BP2-201ENST00000437976 242 ntBASIC-0.9□□□□□ -2.55
CCDC88BA6NC98 RBM11P1-201ENST00000604951 799 ntBASIC-0.9□□□□□ -2.55
CCDC88BA6NC98 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC-0.9□□□□□ -2.55
CCDC88BA6NC98 RNU6-97P-201ENST00000363387 104 ntBASIC-0.91□□□□□ -2.55
CCDC88BA6NC98 snoZ40.1-201ENST00000364540 72 ntBASIC-0.91□□□□□ -2.55
CCDC88BA6NC98 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC-0.91□□□□□ -2.55
CCDC88BA6NC98 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC-0.91□□□□□ -2.55
CCDC88BA6NC98 MTCO3P17-201ENST00000443775 513 ntBASIC-0.91□□□□□ -2.55
CCDC88BA6NC98 RPL39P6-201ENST00000448289 150 ntBASIC-0.91□□□□□ -2.55
CCDC88BA6NC98 AC093850.1-201ENST00000454121 251 ntBASIC-0.91□□□□□ -2.55
CCDC88BA6NC98 RNU6-977P-201ENST00000516411 103 ntBASIC-0.91□□□□□ -2.55
CCDC88BA6NC98 RNU6-1098P-201ENST00000516772 96 ntBASIC-0.91□□□□□ -2.55
CCDC88BA6NC98 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC-0.91□□□□□ -2.55
CCDC88BA6NC98 NUCB2-220ENST00000622082 1369 ntAPPRIS P2 TSL 5 BASIC-0.91□□□□□ -2.56
CCDC88BA6NC98 SNORA2B-201ENST00000384583 137 ntBASIC-0.92□□□□□ -2.56
CCDC88BA6NC98 RNA5SP163-201ENST00000410304 99 ntBASIC-0.92□□□□□ -2.56
CCDC88BA6NC98 UBE2D3P3-201ENST00000426992 425 ntBASIC-0.92□□□□□ -2.56
Retrieved 100 of 98,524 protein–RNA pairs in 136.9 ms