Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC4□□□□□ -1.77
USP3Q9Y6I4 MIR378D2-201ENST00000580636 98 ntBASIC4□□□□□ -1.77
USP3Q9Y6I4 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC4□□□□□ -1.77
USP3Q9Y6I4 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
USP3Q9Y6I4 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4□□□□□ -1.77
USP3Q9Y6I4 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC4□□□□□ -1.77
USP3Q9Y6I4 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4□□□□□ -1.77
USP3Q9Y6I4 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
USP3Q9Y6I4 ANKRD20A9P-201ENST00000457997 2978 ntBASIC3.99□□□□□ -1.77
USP3Q9Y6I4 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.99□□□□□ -1.77
USP3Q9Y6I4 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
USP3Q9Y6I4 SNORD32B-201ENST00000364460 84 ntBASIC3.99□□□□□ -1.77
USP3Q9Y6I4 SNORA51.4-201ENST00000364993 124 ntBASIC3.99□□□□□ -1.77
USP3Q9Y6I4 Y_RNA.584-201ENST00000391090 114 ntBASIC3.99□□□□□ -1.77
USP3Q9Y6I4 RNU6-383P-201ENST00000410864 94 ntBASIC3.99□□□□□ -1.77
USP3Q9Y6I4 SNORA57.3-201ENST00000411095 141 ntBASIC3.99□□□□□ -1.77
USP3Q9Y6I4 RN7SKP101-201ENST00000411376 320 ntBASIC3.99□□□□□ -1.77
USP3Q9Y6I4 AL139247.1-201ENST00000422768 325 ntBASIC3.99□□□□□ -1.77
USP3Q9Y6I4 SNORA71B-202ENST00000439232 272 ntBASIC3.99□□□□□ -1.77
USP3Q9Y6I4 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC3.99□□□□□ -1.77
USP3Q9Y6I4 AL500522.2-201ENST00000448562 343 ntBASIC3.99□□□□□ -1.77
USP3Q9Y6I4 RN7SL542P-201ENST00000467147 294 ntBASIC3.99□□□□□ -1.77
USP3Q9Y6I4 RPL36AP48-201ENST00000485521 314 ntBASIC3.99□□□□□ -1.77
USP3Q9Y6I4 RAC1P2-201ENST00000511164 579 ntBASIC3.99□□□□□ -1.77
USP3Q9Y6I4 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC3.99□□□□□ -1.77
USP3Q9Y6I4 AL360157.1-201ENST00000565962 87 ntBASIC3.99□□□□□ -1.77
USP3Q9Y6I4 MIR5187-201ENST00000583479 76 ntBASIC3.99□□□□□ -1.77
USP3Q9Y6I4 SNORA62.6-201ENST00000606322 83 ntBASIC3.99□□□□□ -1.77
USP3Q9Y6I4 U6.95-201ENST00000636931 70 ntBASIC3.99□□□□□ -1.77
USP3Q9Y6I4 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
USP3Q9Y6I4 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.99□□□□□ -1.77
USP3Q9Y6I4 AC009487.4-201ENST00000624969 3585 ntBASIC3.98□□□□□ -1.77
USP3Q9Y6I4 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC3.98□□□□□ -1.77
USP3Q9Y6I4 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.98□□□□□ -1.77
USP3Q9Y6I4 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.98□□□□□ -1.77
USP3Q9Y6I4 snoU2_19.1-201ENST00000362361 80 ntBASIC3.98□□□□□ -1.77
USP3Q9Y6I4 RNU6-674P-201ENST00000363831 107 ntBASIC3.98□□□□□ -1.77
USP3Q9Y6I4 SNORD45.3-201ENST00000363836 72 ntBASIC3.98□□□□□ -1.77
USP3Q9Y6I4 RNU6-755P-201ENST00000364400 103 ntBASIC3.98□□□□□ -1.77
USP3Q9Y6I4 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC3.98□□□□□ -1.77
USP3Q9Y6I4 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC3.98□□□□□ -1.77
USP3Q9Y6I4 AC112771.1-201ENST00000463581 102 ntBASIC3.98□□□□□ -1.77
USP3Q9Y6I4 RPS26P55-201ENST00000471178 356 ntBASIC3.98□□□□□ -1.77
USP3Q9Y6I4 RNU6-1337P-201ENST00000516525 95 ntBASIC3.98□□□□□ -1.77
USP3Q9Y6I4 RNU5F-4P-201ENST00000516581 114 ntBASIC3.98□□□□□ -1.77
USP3Q9Y6I4 AC022695.1-201ENST00000522089 237 ntBASIC3.98□□□□□ -1.77
USP3Q9Y6I4 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC3.98□□□□□ -1.77
USP3Q9Y6I4 AC023043.3-201ENST00000593113 385 ntBASIC3.98□□□□□ -1.77
USP3Q9Y6I4 AC005972.2-201ENST00000604690 348 ntBASIC3.98□□□□□ -1.77
USP3Q9Y6I4 AL137849.1-201ENST00000604767 169 ntBASIC3.98□□□□□ -1.77
USP3Q9Y6I4 AL121772.2-201ENST00000614331 297 ntBASIC3.98□□□□□ -1.77
USP3Q9Y6I4 Six3os1_7.1-201ENST00000621512 201 ntBASIC3.98□□□□□ -1.77
USP3Q9Y6I4 AC039056.2-201ENST00000622261 511 ntBASIC3.98□□□□□ -1.77
USP3Q9Y6I4 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
USP3Q9Y6I4 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
USP3Q9Y6I4 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
USP3Q9Y6I4 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC3.97□□□□□ -1.77
USP3Q9Y6I4 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
USP3Q9Y6I4 AC006504.1-201ENST00000562493 3666 ntBASIC3.97□□□□□ -1.77
USP3Q9Y6I4 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC3.97□□□□□ -1.77
USP3Q9Y6I4 SNORA27.1-201ENST00000362604 124 ntBASIC3.97□□□□□ -1.77
USP3Q9Y6I4 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
USP3Q9Y6I4 RNY4P18-201ENST00000391107 89 ntBASIC3.97□□□□□ -1.77
USP3Q9Y6I4 SNORA11-201ENST00000408789 128 ntBASIC3.97□□□□□ -1.77
USP3Q9Y6I4 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.97□□□□□ -1.77
USP3Q9Y6I4 AL121890.1-201ENST00000435457 205 ntBASIC3.97□□□□□ -1.77
USP3Q9Y6I4 RBMY2UP-201ENST00000453474 324 ntBASIC3.97□□□□□ -1.77
USP3Q9Y6I4 RNU6-437P-201ENST00000459408 95 ntBASIC3.97□□□□□ -1.77
USP3Q9Y6I4 AC010598.1-201ENST00000510378 103 ntBASIC3.97□□□□□ -1.77
USP3Q9Y6I4 Y_RNA.709-201ENST00000516952 92 ntBASIC3.97□□□□□ -1.77
USP3Q9Y6I4 POLR3GP1-201ENST00000594073 261 ntBASIC3.97□□□□□ -1.77
USP3Q9Y6I4 AC034229.5-201ENST00000624258 185 ntBASIC3.97□□□□□ -1.77
USP3Q9Y6I4 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.97□□□□□ -1.77
USP3Q9Y6I4 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.97□□□□□ -1.77
USP3Q9Y6I4 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
USP3Q9Y6I4 LINC02471-203ENST00000641941 4752 ntBASIC3.97□□□□□ -1.77
USP3Q9Y6I4 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
USP3Q9Y6I4 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.96□□□□□ -1.77
USP3Q9Y6I4 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC3.96□□□□□ -1.77
USP3Q9Y6I4 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.96□□□□□ -1.77
USP3Q9Y6I4 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC3.96□□□□□ -1.78
USP3Q9Y6I4 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC3.96□□□□□ -1.78
USP3Q9Y6I4 SNORA25.7-201ENST00000364375 127 ntBASIC3.96□□□□□ -1.78
USP3Q9Y6I4 RNU6ATAC-201ENST00000408749 126 ntBASIC3.96□□□□□ -1.78
USP3Q9Y6I4 MIR1278-201ENST00000408753 81 ntBASIC3.96□□□□□ -1.78
USP3Q9Y6I4 SNRPGP5-201ENST00000456003 220 ntBASIC3.96□□□□□ -1.78
USP3Q9Y6I4 RNA5SP208-201ENST00000516156 78 ntBASIC3.96□□□□□ -1.78
USP3Q9Y6I4 RNU6-197P-201ENST00000516680 100 ntBASIC3.96□□□□□ -1.78
USP3Q9Y6I4 MIR4753-201ENST00000585119 83 ntBASIC3.96□□□□□ -1.78
USP3Q9Y6I4 AC008739.2-201ENST00000597006 317 ntBASIC3.96□□□□□ -1.78
USP3Q9Y6I4 AC006435.5-201ENST00000624486 112 ntBASIC3.96□□□□□ -1.78
USP3Q9Y6I4 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
USP3Q9Y6I4 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
USP3Q9Y6I4 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
USP3Q9Y6I4 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.96□□□□□ -1.78
USP3Q9Y6I4 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC3.96□□□□□ -1.78
USP3Q9Y6I4 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.96□□□□□ -1.78
USP3Q9Y6I4 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
USP3Q9Y6I4 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
USP3Q9Y6I4 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 112.4 ms