Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC2.31□□□□□ -2.04
LIMA1Q9UHB6 AL691447.3-201ENST00000635020 330 ntBASIC2.31□□□□□ -2.04
LIMA1Q9UHB6 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
LIMA1Q9UHB6 RNA5SP138-201ENST00000365098 114 ntBASIC2.3□□□□□ -2.04
LIMA1Q9UHB6 Y_RNA.394-201ENST00000383942 103 ntBASIC2.3□□□□□ -2.04
LIMA1Q9UHB6 U8.10-201ENST00000384260 133 ntBASIC2.3□□□□□ -2.04
LIMA1Q9UHB6 Y_RNA.482-201ENST00000384377 111 ntBASIC2.3□□□□□ -2.04
LIMA1Q9UHB6 RNU6-1304P-201ENST00000411374 106 ntBASIC2.3□□□□□ -2.04
LIMA1Q9UHB6 AC243428.1-201ENST00000421099 264 ntBASIC2.3□□□□□ -2.04
LIMA1Q9UHB6 AF228730.4-201ENST00000421457 183 ntBASIC2.3□□□□□ -2.04
LIMA1Q9UHB6 Z82188.1-201ENST00000436709 154 ntBASIC2.3□□□□□ -2.04
LIMA1Q9UHB6 Y_RNA.635-201ENST00000459041 101 ntBASIC2.3□□□□□ -2.04
LIMA1Q9UHB6 AC079804.2-201ENST00000490376 200 ntBASIC2.3□□□□□ -2.04
LIMA1Q9UHB6 AC093259.1-201ENST00000509755 300 ntBASIC2.3□□□□□ -2.04
LIMA1Q9UHB6 RNU1-40P-201ENST00000516816 164 ntBASIC2.3□□□□□ -2.04
LIMA1Q9UHB6 RNU1-97P-201ENST00000516872 164 ntBASIC2.3□□□□□ -2.04
LIMA1Q9UHB6 RNA5SP490-201ENST00000517141 136 ntBASIC2.3□□□□□ -2.04
LIMA1Q9UHB6 APOOP3-201ENST00000536787 586 ntBASIC2.3□□□□□ -2.04
LIMA1Q9UHB6 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC2.3□□□□□ -2.04
LIMA1Q9UHB6 MIR5694-201ENST00000581190 76 ntBASIC2.3□□□□□ -2.04
LIMA1Q9UHB6 AC016727.2-201ENST00000603988 621 ntBASIC2.3□□□□□ -2.04
LIMA1Q9UHB6 RPL17P51-201ENST00000605218 238 ntBASIC2.3□□□□□ -2.04
LIMA1Q9UHB6 AL050343.2-201ENST00000607338 280 ntBASIC2.3□□□□□ -2.04
LIMA1Q9UHB6 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC2.3□□□□□ -2.04
LIMA1Q9UHB6 AC073544.1-201ENST00000600110 1595 ntBASIC2.3□□□□□ -2.04
LIMA1Q9UHB6 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC2.3□□□□□ -2.04
LIMA1Q9UHB6 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.29□□□□□ -2.04
LIMA1Q9UHB6 ZNF299P-201ENST00000406845 1804 ntBASIC2.29□□□□□ -2.04
LIMA1Q9UHB6 SNORD115-32-201ENST00000364079 82 ntBASIC2.29□□□□□ -2.04
LIMA1Q9UHB6 SNORA18.2-201ENST00000383865 132 ntBASIC2.29□□□□□ -2.04
LIMA1Q9UHB6 Y_RNA.387-201ENST00000383918 102 ntBASIC2.29□□□□□ -2.04
LIMA1Q9UHB6 RNU6-301P-201ENST00000384277 107 ntBASIC2.29□□□□□ -2.04
LIMA1Q9UHB6 RNU6-1050P-201ENST00000410388 107 ntBASIC2.29□□□□□ -2.04
LIMA1Q9UHB6 RNU6-370P-201ENST00000411008 104 ntBASIC2.29□□□□□ -2.04
LIMA1Q9UHB6 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC2.29□□□□□ -2.04
LIMA1Q9UHB6 AC027124.2-201ENST00000428249 105 ntBASIC2.29□□□□□ -2.04
LIMA1Q9UHB6 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC2.29□□□□□ -2.04
LIMA1Q9UHB6 UBE2V1P7-201ENST00000446395 340 ntBASIC2.29□□□□□ -2.04
LIMA1Q9UHB6 SNORD19B-201ENST00000459623 84 ntBASIC2.29□□□□□ -2.04
LIMA1Q9UHB6 RNU6-559P-201ENST00000516151 98 ntBASIC2.29□□□□□ -2.04
LIMA1Q9UHB6 Y_RNA.670-201ENST00000516255 105 ntBASIC2.29□□□□□ -2.04
LIMA1Q9UHB6 RNU5F-4P-201ENST00000516581 114 ntBASIC2.29□□□□□ -2.04
LIMA1Q9UHB6 RNU6-1098P-201ENST00000516772 96 ntBASIC2.29□□□□□ -2.04
LIMA1Q9UHB6 Y_RNA.708-201ENST00000516950 96 ntBASIC2.29□□□□□ -2.04
LIMA1Q9UHB6 SNORA31.25-201ENST00000517242 134 ntBASIC2.29□□□□□ -2.04
LIMA1Q9UHB6 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC2.29□□□□□ -2.04
LIMA1Q9UHB6 DEFB131C-201ENST00000528817 165 ntBASIC2.29□□□□□ -2.04
LIMA1Q9UHB6 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC2.29□□□□□ -2.04
LIMA1Q9UHB6 AC010928.2-201ENST00000588017 287 ntBASIC2.29□□□□□ -2.04
LIMA1Q9UHB6 TEX41-243ENST00000614173 190 ntTSL 5 BASIC2.29□□□□□ -2.04
LIMA1Q9UHB6 MTND4LP32-201ENST00000636111 270 ntBASIC2.29□□□□□ -2.04
LIMA1Q9UHB6 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.29□□□□□ -2.04
LIMA1Q9UHB6 RNU1-76P-201ENST00000362903 159 ntBASIC2.28□□□□□ -2.04
LIMA1Q9UHB6 SNORA6-201ENST00000384033 151 ntBASIC2.28□□□□□ -2.04
LIMA1Q9UHB6 Y_RNA.419-201ENST00000384041 102 ntBASIC2.28□□□□□ -2.04
LIMA1Q9UHB6 SNORD14D-201ENST00000384390 87 ntBASIC2.28□□□□□ -2.04
LIMA1Q9UHB6 MIR487A-201ENST00000385009 80 ntBASIC2.28□□□□□ -2.04
LIMA1Q9UHB6 HMGN2P39-201ENST00000398005 273 ntBASIC2.28□□□□□ -2.04
LIMA1Q9UHB6 SNORD23.1-201ENST00000408212 104 ntBASIC2.28□□□□□ -2.04
LIMA1Q9UHB6 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2.28□□□□□ -2.04
LIMA1Q9UHB6 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC2.28□□□□□ -2.04
LIMA1Q9UHB6 HMGN2P18-201ENST00000450680 270 ntBASIC2.28□□□□□ -2.04
LIMA1Q9UHB6 ATP5EP1-201ENST00000510257 156 ntBASIC2.28□□□□□ -2.04
LIMA1Q9UHB6 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC2.28□□□□□ -2.04
LIMA1Q9UHB6 RNU6-1213P-201ENST00000517075 94 ntBASIC2.28□□□□□ -2.04
LIMA1Q9UHB6 AC026470.2-201ENST00000561492 181 ntBASIC2.28□□□□□ -2.04
LIMA1Q9UHB6 SNORD53-201ENST00000579969 78 ntBASIC2.28□□□□□ -2.04
LIMA1Q9UHB6 AC009229.3-201ENST00000608056 282 ntBASIC2.28□□□□□ -2.04
LIMA1Q9UHB6 MIR6840-201ENST00000611937 71 ntBASIC2.28□□□□□ -2.04
LIMA1Q9UHB6 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.28□□□□□ -2.04
LIMA1Q9UHB6 AC005562.2-201ENST00000618264 111 ntBASIC2.28□□□□□ -2.04
LIMA1Q9UHB6 AC012640.5-201ENST00000623897 319 ntBASIC2.28□□□□□ -2.04
LIMA1Q9UHB6 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
LIMA1Q9UHB6 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
LIMA1Q9UHB6 SNORD115-3-201ENST00000363100 82 ntBASIC2.27□□□□□ -2.05
LIMA1Q9UHB6 RNU6-1188P-201ENST00000363795 107 ntBASIC2.27□□□□□ -2.05
LIMA1Q9UHB6 Y_RNA.404-201ENST00000383978 102 ntBASIC2.27□□□□□ -2.05
LIMA1Q9UHB6 MIR32-201ENST00000384965 70 ntBASIC2.27□□□□□ -2.05
LIMA1Q9UHB6 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC2.27□□□□□ -2.05
LIMA1Q9UHB6 AL035666.1-201ENST00000446195 348 ntBASIC2.27□□□□□ -2.05
LIMA1Q9UHB6 AC245102.2-201ENST00000448956 180 ntBASIC2.27□□□□□ -2.05
LIMA1Q9UHB6 snoU13.30-201ENST00000458951 104 ntBASIC2.27□□□□□ -2.05
LIMA1Q9UHB6 AC007215.1-201ENST00000464893 276 ntBASIC2.27□□□□□ -2.05
LIMA1Q9UHB6 Y_RNA.718-201ENST00000517110 102 ntBASIC2.27□□□□□ -2.05
LIMA1Q9UHB6 CBX3P8-201ENST00000532412 525 ntBASIC2.27□□□□□ -2.05
LIMA1Q9UHB6 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC2.27□□□□□ -2.05
LIMA1Q9UHB6 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC2.27□□□□□ -2.05
LIMA1Q9UHB6 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC2.27□□□□□ -2.05
LIMA1Q9UHB6 RMST_6.1-201ENST00000611980 203 ntBASIC2.27□□□□□ -2.05
LIMA1Q9UHB6 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.27□□□□□ -2.05
LIMA1Q9UHB6 KPNA2P1-201ENST00000458289 1591 ntBASIC2.27□□□□□ -2.05
LIMA1Q9UHB6 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC2.26□□□□□ -2.05
LIMA1Q9UHB6 Y_RNA.2-201ENST00000362330 96 ntBASIC2.26□□□□□ -2.05
LIMA1Q9UHB6 Y_RNA.48-201ENST00000362710 103 ntBASIC2.26□□□□□ -2.05
LIMA1Q9UHB6 RNU6-595P-201ENST00000363944 107 ntBASIC2.26□□□□□ -2.05
LIMA1Q9UHB6 Y_RNA.259-201ENST00000364619 101 ntBASIC2.26□□□□□ -2.05
LIMA1Q9UHB6 RNU6-1297P-201ENST00000384415 104 ntBASIC2.26□□□□□ -2.05
LIMA1Q9UHB6 MIR29C-201ENST00000385231 88 ntBASIC2.26□□□□□ -2.05
LIMA1Q9UHB6 MIR549A-201ENST00000385268 96 ntBASIC2.26□□□□□ -2.05
LIMA1Q9UHB6 SNORA40.19-201ENST00000390846 128 ntBASIC2.26□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 116.2 ms