Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 AC069528.2-201ENST00000624849 1991 ntBASIC3.2□□□□□ -1.9
PCIF1Q9H4Z3 Y_RNA.16-201ENST00000362421 102 ntBASIC3.2□□□□□ -1.9
PCIF1Q9H4Z3 Y_RNA.60-201ENST00000362831 98 ntBASIC3.2□□□□□ -1.9
PCIF1Q9H4Z3 RNU5F-3P-201ENST00000363767 117 ntBASIC3.2□□□□□ -1.9
PCIF1Q9H4Z3 U3.9-201ENST00000363823 204 ntBASIC3.2□□□□□ -1.9
PCIF1Q9H4Z3 Y_RNA.179-201ENST00000363844 90 ntBASIC3.2□□□□□ -1.9
PCIF1Q9H4Z3 Y_RNA.237-201ENST00000364439 102 ntBASIC3.2□□□□□ -1.9
PCIF1Q9H4Z3 RNU6-793P-201ENST00000384233 104 ntBASIC3.2□□□□□ -1.9
PCIF1Q9H4Z3 SNORD63-201ENST00000384262 68 ntBASIC3.2□□□□□ -1.9
PCIF1Q9H4Z3 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
PCIF1Q9H4Z3 Y_RNA.595-201ENST00000410403 105 ntBASIC3.2□□□□□ -1.9
PCIF1Q9H4Z3 AC139712.2-201ENST00000424302 339 ntBASIC3.2□□□□□ -1.9
PCIF1Q9H4Z3 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC3.2□□□□□ -1.9
PCIF1Q9H4Z3 AC073901.1-201ENST00000462471 408 ntBASIC3.2□□□□□ -1.9
PCIF1Q9H4Z3 RPL39P38-201ENST00000467018 153 ntBASIC3.2□□□□□ -1.9
PCIF1Q9H4Z3 S100A11P2-201ENST00000467589 312 ntBASIC3.2□□□□□ -1.9
PCIF1Q9H4Z3 RNU6-496P-201ENST00000516145 99 ntBASIC3.2□□□□□ -1.9
PCIF1Q9H4Z3 SNORA74D-201ENST00000516404 141 ntBASIC3.2□□□□□ -1.9
PCIF1Q9H4Z3 SCARNA11.3-201ENST00000517276 130 ntBASIC3.2□□□□□ -1.9
PCIF1Q9H4Z3 MIR4423-201ENST00000580922 80 ntBASIC3.2□□□□□ -1.9
PCIF1Q9H4Z3 MTND5P6-201ENST00000422338 1798 ntBASIC3.2□□□□□ -1.9
PCIF1Q9H4Z3 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
PCIF1Q9H4Z3 RNU6-727P-201ENST00000363592 107 ntBASIC3.19□□□□□ -1.9
PCIF1Q9H4Z3 Y_RNA.477-201ENST00000384352 108 ntBASIC3.19□□□□□ -1.9
PCIF1Q9H4Z3 Y_RNA.489-201ENST00000384410 101 ntBASIC3.19□□□□□ -1.9
PCIF1Q9H4Z3 RNU6-907P-201ENST00000390924 102 ntBASIC3.19□□□□□ -1.9
PCIF1Q9H4Z3 AL512633.1-201ENST00000399931 655 ntBASIC3.19□□□□□ -1.9
PCIF1Q9H4Z3 IFNA11P-201ENST00000446352 526 ntBASIC3.19□□□□□ -1.9
PCIF1Q9H4Z3 HSPE1P25-201ENST00000455484 251 ntBASIC3.19□□□□□ -1.9
PCIF1Q9H4Z3 RPS29P26-201ENST00000477483 171 ntBASIC3.19□□□□□ -1.9
PCIF1Q9H4Z3 RNU6-794P-201ENST00000517261 64 ntBASIC3.19□□□□□ -1.9
PCIF1Q9H4Z3 DEFB108E-201ENST00000524692 240 ntBASIC3.19□□□□□ -1.9
PCIF1Q9H4Z3 MDM2-232ENST00000544561 213 ntTSL 5 BASIC3.19□□□□□ -1.9
PCIF1Q9H4Z3 RPL30P11-203ENST00000598995 310 ntBASIC3.19□□□□□ -1.9
PCIF1Q9H4Z3 SNRPGP20-201ENST00000604477 205 ntBASIC3.19□□□□□ -1.9
PCIF1Q9H4Z3 AC091953.5-201ENST00000622919 233 ntBASIC3.19□□□□□ -1.9
PCIF1Q9H4Z3 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
PCIF1Q9H4Z3 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
PCIF1Q9H4Z3 MAPK10-266ENST00000641066 6555 ntBASIC3.19□□□□□ -1.9
PCIF1Q9H4Z3 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.19□□□□□ -1.9
PCIF1Q9H4Z3 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
PCIF1Q9H4Z3 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
PCIF1Q9H4Z3 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.18□□□□□ -1.9
PCIF1Q9H4Z3 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
PCIF1Q9H4Z3 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
PCIF1Q9H4Z3 RNU1-72P-201ENST00000362976 153 ntBASIC3.18□□□□□ -1.9
PCIF1Q9H4Z3 SNORD81.1-201ENST00000363064 77 ntBASIC3.18□□□□□ -1.9
PCIF1Q9H4Z3 RNU6-486P-201ENST00000363116 107 ntBASIC3.18□□□□□ -1.9
PCIF1Q9H4Z3 RNU6-20P-201ENST00000384106 107 ntBASIC3.18□□□□□ -1.9
PCIF1Q9H4Z3 Y_RNA.462-201ENST00000384268 102 ntBASIC3.18□□□□□ -1.9
PCIF1Q9H4Z3 RNU4-30P-201ENST00000410245 143 ntBASIC3.18□□□□□ -1.9
PCIF1Q9H4Z3 EEF1A1P41-201ENST00000414667 207 ntBASIC3.18□□□□□ -1.9
PCIF1Q9H4Z3 AC027124.2-201ENST00000428249 105 ntBASIC3.18□□□□□ -1.9
PCIF1Q9H4Z3 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.18□□□□□ -1.9
PCIF1Q9H4Z3 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC3.18□□□□□ -1.9
PCIF1Q9H4Z3 UQCRBP2-201ENST00000447827 297 ntBASIC3.18□□□□□ -1.9
PCIF1Q9H4Z3 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC3.18□□□□□ -1.9
PCIF1Q9H4Z3 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.18□□□□□ -1.9
PCIF1Q9H4Z3 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.18□□□□□ -1.9
PCIF1Q9H4Z3 RNA5SP380-201ENST00000517190 98 ntBASIC3.18□□□□□ -1.9
PCIF1Q9H4Z3 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC3.18□□□□□ -1.9
PCIF1Q9H4Z3 AC026470.2-201ENST00000561492 181 ntBASIC3.18□□□□□ -1.9
PCIF1Q9H4Z3 MIR3668-201ENST00000582138 75 ntBASIC3.18□□□□□ -1.9
PCIF1Q9H4Z3 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.18□□□□□ -1.9
PCIF1Q9H4Z3 AC005357.1-201ENST00000588399 301 ntBASIC3.18□□□□□ -1.9
PCIF1Q9H4Z3 AC099778.2-201ENST00000610904 211 ntBASIC3.18□□□□□ -1.9
PCIF1Q9H4Z3 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC3.18□□□□□ -1.9
PCIF1Q9H4Z3 AC005562.2-201ENST00000618264 111 ntBASIC3.18□□□□□ -1.9
PCIF1Q9H4Z3 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
PCIF1Q9H4Z3 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.17□□□□□ -1.9
PCIF1Q9H4Z3 RNU1-62P-201ENST00000362599 164 ntBASIC3.17□□□□□ -1.9
PCIF1Q9H4Z3 RNU6-626P-201ENST00000363354 107 ntBASIC3.17□□□□□ -1.9
PCIF1Q9H4Z3 Y_RNA.286-201ENST00000364813 102 ntBASIC3.17□□□□□ -1.9
PCIF1Q9H4Z3 SNORA18.2-201ENST00000383865 132 ntBASIC3.17□□□□□ -1.9
PCIF1Q9H4Z3 SNORA44-201ENST00000384584 132 ntBASIC3.17□□□□□ -1.9
PCIF1Q9H4Z3 Y_RNA.570-201ENST00000384750 101 ntBASIC3.17□□□□□ -1.9
PCIF1Q9H4Z3 MIR320B2-201ENST00000408479 138 ntBASIC3.17□□□□□ -1.9
PCIF1Q9H4Z3 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC3.17□□□□□ -1.9
PCIF1Q9H4Z3 RPS29P12-201ENST00000460178 152 ntBASIC3.17□□□□□ -1.9
PCIF1Q9H4Z3 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC3.17□□□□□ -1.9
PCIF1Q9H4Z3 RNU6-1338P-201ENST00000516328 91 ntBASIC3.17□□□□□ -1.9
PCIF1Q9H4Z3 AC093331.1-201ENST00000521474 169 ntBASIC3.17□□□□□ -1.9
PCIF1Q9H4Z3 AK6P2-201ENST00000549020 471 ntBASIC3.17□□□□□ -1.9
PCIF1Q9H4Z3 AC233702.2-202ENST00000562547 291 ntBASIC3.17□□□□□ -1.9
PCIF1Q9H4Z3 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC3.17□□□□□ -1.9
PCIF1Q9H4Z3 AL670379.2-201ENST00000604983 252 ntBASIC3.17□□□□□ -1.9
PCIF1Q9H4Z3 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.17□□□□□ -1.9
PCIF1Q9H4Z3 AC107294.3-201ENST00000609211 526 ntBASIC3.17□□□□□ -1.9
PCIF1Q9H4Z3 AC078938.1-201ENST00000620993 318 ntBASIC3.17□□□□□ -1.9
PCIF1Q9H4Z3 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC3.17□□□□□ -1.9
PCIF1Q9H4Z3 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
PCIF1Q9H4Z3 AC099654.7-201ENST00000635788 2127 ntBASIC3.17□□□□□ -1.9
PCIF1Q9H4Z3 AL035425.3-201ENST00000564206 4996 ntBASIC3.17□□□□□ -1.9
PCIF1Q9H4Z3 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
PCIF1Q9H4Z3 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
PCIF1Q9H4Z3 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
PCIF1Q9H4Z3 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
PCIF1Q9H4Z3 AL391987.6-201ENST00000305671 199 ntBASIC3.16□□□□□ -1.9
PCIF1Q9H4Z3 MIR335-201ENST00000362173 94 ntBASIC3.16□□□□□ -1.9
PCIF1Q9H4Z3 SNORA18.3-201ENST00000384122 132 ntBASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 117.7 ms