Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AL445646.1-201ENST00000431784 216 ntBASIC2.04□□□□□ -2.08
CCDC3Q9BQI4 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC2.04□□□□□ -2.08
CCDC3Q9BQI4 Y_RNA.635-201ENST00000459041 101 ntBASIC2.04□□□□□ -2.08
CCDC3Q9BQI4 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.04□□□□□ -2.08
CCDC3Q9BQI4 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC2.04□□□□□ -2.08
CCDC3Q9BQI4 RNU6-1198P-201ENST00000516904 67 ntBASIC2.04□□□□□ -2.08
CCDC3Q9BQI4 Y_RNA.708-201ENST00000516950 96 ntBASIC2.04□□□□□ -2.08
CCDC3Q9BQI4 AC105029.1-201ENST00000520250 669 ntBASIC2.04□□□□□ -2.08
CCDC3Q9BQI4 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC2.04□□□□□ -2.08
CCDC3Q9BQI4 AC026470.2-201ENST00000561492 181 ntBASIC2.04□□□□□ -2.08
CCDC3Q9BQI4 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC2.04□□□□□ -2.08
CCDC3Q9BQI4 MIR4273-201ENST00000582824 84 ntBASIC2.04□□□□□ -2.08
CCDC3Q9BQI4 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC2.04□□□□□ -2.08
CCDC3Q9BQI4 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC2.04□□□□□ -2.08
CCDC3Q9BQI4 AC063943.3-201ENST00000615562 356 ntBASIC2.04□□□□□ -2.08
CCDC3Q9BQI4 AL353997.5-201ENST00000618886 171 ntBASIC2.04□□□□□ -2.08
CCDC3Q9BQI4 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC2.03□□□□□ -2.08
CCDC3Q9BQI4 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.03□□□□□ -2.08
CCDC3Q9BQI4 ZNF72P-201ENST00000425869 1908 ntBASIC2.03□□□□□ -2.08
CCDC3Q9BQI4 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.03□□□□□ -2.08
CCDC3Q9BQI4 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.03□□□□□ -2.08
CCDC3Q9BQI4 RNU1-76P-201ENST00000362903 159 ntBASIC2.03□□□□□ -2.08
CCDC3Q9BQI4 Y_RNA.263-201ENST00000364659 114 ntBASIC2.03□□□□□ -2.08
CCDC3Q9BQI4 RNU6-601P-201ENST00000384540 107 ntBASIC2.03□□□□□ -2.08
CCDC3Q9BQI4 SNORA40.19-201ENST00000390846 128 ntBASIC2.03□□□□□ -2.08
CCDC3Q9BQI4 RNU6-1050P-201ENST00000410388 107 ntBASIC2.03□□□□□ -2.08
CCDC3Q9BQI4 HMGN2P23-201ENST00000456759 269 ntBASIC2.03□□□□□ -2.08
CCDC3Q9BQI4 RN7SKP210-201ENST00000459176 261 ntBASIC2.03□□□□□ -2.08
CCDC3Q9BQI4 AC087477.1-201ENST00000465747 340 ntBASIC2.03□□□□□ -2.08
CCDC3Q9BQI4 RPL30P10-201ENST00000488148 337 ntBASIC2.03□□□□□ -2.08
CCDC3Q9BQI4 AC091951.2-201ENST00000500762 203 ntBASIC2.03□□□□□ -2.08
CCDC3Q9BQI4 RNU6-875P-201ENST00000516488 106 ntBASIC2.03□□□□□ -2.08
CCDC3Q9BQI4 RNU6-295P-201ENST00000516901 104 ntBASIC2.03□□□□□ -2.08
CCDC3Q9BQI4 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC2.03□□□□□ -2.08
CCDC3Q9BQI4 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC2.03□□□□□ -2.08
CCDC3Q9BQI4 AC104581.2-201ENST00000572227 430 ntBASIC2.03□□□□□ -2.08
CCDC3Q9BQI4 AC005899.2-201ENST00000584353 90 ntBASIC2.03□□□□□ -2.08
CCDC3Q9BQI4 LARP7P1-201ENST00000605576 316 ntBASIC2.03□□□□□ -2.08
CCDC3Q9BQI4 AP000654.2-201ENST00000605633 586 ntBASIC2.03□□□□□ -2.08
CCDC3Q9BQI4 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC2.03□□□□□ -2.08
CCDC3Q9BQI4 SNORA16B-201ENST00000364674 135 ntBASIC2.02□□□□□ -2.09
CCDC3Q9BQI4 MIR208B-201ENST00000401172 77 ntBASIC2.02□□□□□ -2.09
CCDC3Q9BQI4 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.02□□□□□ -2.09
CCDC3Q9BQI4 Y_RNA.594-201ENST00000410373 140 ntBASIC2.02□□□□□ -2.09
CCDC3Q9BQI4 EDDM3CP-201ENST00000415977 425 ntBASIC2.02□□□□□ -2.09
CCDC3Q9BQI4 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
CCDC3Q9BQI4 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC2.02□□□□□ -2.09
CCDC3Q9BQI4 AC092473.1-201ENST00000441098 221 ntBASIC2.02□□□□□ -2.09
CCDC3Q9BQI4 RNU6-991P-201ENST00000516168 107 ntBASIC2.02□□□□□ -2.09
CCDC3Q9BQI4 Y_RNA.702-201ENST00000516843 96 ntBASIC2.02□□□□□ -2.09
CCDC3Q9BQI4 RNA5SP54-201ENST00000516951 92 ntBASIC2.02□□□□□ -2.09
CCDC3Q9BQI4 RNU6-667P-201ENST00000517186 102 ntBASIC2.02□□□□□ -2.09
CCDC3Q9BQI4 AC109446.1-201ENST00000566172 220 ntBASIC2.02□□□□□ -2.09
CCDC3Q9BQI4 AC113139.1-201ENST00000605049 239 ntBASIC2.02□□□□□ -2.09
CCDC3Q9BQI4 BX322639.1-202ENST00000423987 2213 ntBASIC2.02□□□□□ -2.09
CCDC3Q9BQI4 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.02□□□□□ -2.09
CCDC3Q9BQI4 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.02□□□□□ -2.09
CCDC3Q9BQI4 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
CCDC3Q9BQI4 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
CCDC3Q9BQI4 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.01□□□□□ -2.09
CCDC3Q9BQI4 Y_RNA.70-201ENST00000362886 110 ntBASIC2.01□□□□□ -2.09
CCDC3Q9BQI4 U8.10-201ENST00000384260 133 ntBASIC2.01□□□□□ -2.09
CCDC3Q9BQI4 U8.13-201ENST00000390842 128 ntBASIC2.01□□□□□ -2.09
CCDC3Q9BQI4 RNU6-1009P-201ENST00000390996 107 ntBASIC2.01□□□□□ -2.09
CCDC3Q9BQI4 MTND4LP11-201ENST00000422184 280 ntBASIC2.01□□□□□ -2.09
CCDC3Q9BQI4 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC2.01□□□□□ -2.09
CCDC3Q9BQI4 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.01□□□□□ -2.09
CCDC3Q9BQI4 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC2.01□□□□□ -2.09
CCDC3Q9BQI4 snoU13.30-201ENST00000458951 104 ntBASIC2.01□□□□□ -2.09
CCDC3Q9BQI4 Y_RNA.670-201ENST00000516255 105 ntBASIC2.01□□□□□ -2.09
CCDC3Q9BQI4 RNU6-307P-201ENST00000516743 106 ntBASIC2.01□□□□□ -2.09
CCDC3Q9BQI4 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC2.01□□□□□ -2.09
CCDC3Q9BQI4 AC026271.5-201ENST00000577873 130 ntBASIC2.01□□□□□ -2.09
CCDC3Q9BQI4 MIR5701-3-201ENST00000578890 82 ntBASIC2.01□□□□□ -2.09
CCDC3Q9BQI4 MIR5701-1-201ENST00000585138 82 ntBASIC2.01□□□□□ -2.09
CCDC3Q9BQI4 AC010928.2-201ENST00000588017 287 ntBASIC2.01□□□□□ -2.09
CCDC3Q9BQI4 AC243960.4-201ENST00000600532 288 ntBASIC2.01□□□□□ -2.09
CCDC3Q9BQI4 7SK.7-201ENST00000603504 247 ntBASIC2.01□□□□□ -2.09
CCDC3Q9BQI4 MIR5701-2-201ENST00000615634 82 ntBASIC2.01□□□□□ -2.09
CCDC3Q9BQI4 AC104260.1-201ENST00000616660 539 ntBASIC2.01□□□□□ -2.09
CCDC3Q9BQI4 AL008636.1-201ENST00000625038 1018 ntBASIC2.01□□□□□ -2.09
CCDC3Q9BQI4 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC2.01□□□□□ -2.09
CCDC3Q9BQI4 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2□□□□□ -2.09
CCDC3Q9BQI4 RNU6-234P-201ENST00000365229 104 ntBASIC2□□□□□ -2.09
CCDC3Q9BQI4 RNU6-17P-201ENST00000384245 107 ntBASIC2□□□□□ -2.09
CCDC3Q9BQI4 RNU6-18P-201ENST00000384527 107 ntBASIC2□□□□□ -2.09
CCDC3Q9BQI4 RNU6-1093P-201ENST00000391194 107 ntBASIC2□□□□□ -2.09
CCDC3Q9BQI4 U3.40-201ENST00000408706 208 ntBASIC2□□□□□ -2.09
CCDC3Q9BQI4 RNU2-2P-201ENST00000410396 191 ntBASIC2□□□□□ -2.09
CCDC3Q9BQI4 USMG5P1-201ENST00000425964 177 ntBASIC2□□□□□ -2.09
CCDC3Q9BQI4 Z82205.1-201ENST00000428456 297 ntBASIC2□□□□□ -2.09
CCDC3Q9BQI4 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2□□□□□ -2.09
CCDC3Q9BQI4 AL035666.1-201ENST00000446195 348 ntBASIC2□□□□□ -2.09
CCDC3Q9BQI4 RPS27P21-201ENST00000486977 252 ntBASIC2□□□□□ -2.09
CCDC3Q9BQI4 KRTAP13-6P-201ENST00000508999 371 ntBASIC2□□□□□ -2.09
CCDC3Q9BQI4 RNU6-277P-201ENST00000516272 106 ntBASIC2□□□□□ -2.09
CCDC3Q9BQI4 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC2□□□□□ -2.09
CCDC3Q9BQI4 AL590705.4-201ENST00000532209 134 ntBASIC2□□□□□ -2.09
CCDC3Q9BQI4 AC233702.2-202ENST00000562547 291 ntBASIC2□□□□□ -2.09
CCDC3Q9BQI4 MIR3126-201ENST00000577443 74 ntBASIC2□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 98.5 ms