Protein–RNA interactions for Protein: Q96PN7

TRERF1, Transcriptional-regulating factor 1, humanhuman

Predictions only

Length 1,200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRERF1Q96PN7 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC4.29□□□□□ -1.72
TRERF1Q96PN7 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
TRERF1Q96PN7 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
TRERF1Q96PN7 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC4.29□□□□□ -1.72
TRERF1Q96PN7 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC4.28□□□□□ -1.72
TRERF1Q96PN7 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC4.28□□□□□ -1.72
TRERF1Q96PN7 AC073073.2-201ENST00000609827 2578 ntBASIC4.28□□□□□ -1.72
TRERF1Q96PN7 OFD1P6Y-202ENST00000451061 2724 ntBASIC4.28□□□□□ -1.72
TRERF1Q96PN7 Y_RNA.310-201ENST00000365063 113 ntBASIC4.28□□□□□ -1.72
TRERF1Q96PN7 SNORA18.3-201ENST00000384122 132 ntBASIC4.28□□□□□ -1.72
TRERF1Q96PN7 MIR607-201ENST00000385241 96 ntBASIC4.28□□□□□ -1.72
TRERF1Q96PN7 Y_RNA.584-201ENST00000391090 114 ntBASIC4.28□□□□□ -1.72
TRERF1Q96PN7 AC090525.1-201ENST00000479116 478 ntBASIC4.28□□□□□ -1.72
TRERF1Q96PN7 AC103975.1-201ENST00000482506 483 ntBASIC4.28□□□□□ -1.72
TRERF1Q96PN7 Y_RNA.677-201ENST00000516401 85 ntBASIC4.28□□□□□ -1.72
TRERF1Q96PN7 RNU6-537P-201ENST00000517277 103 ntBASIC4.28□□□□□ -1.72
TRERF1Q96PN7 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC4.28□□□□□ -1.72
TRERF1Q96PN7 AC006199.1-201ENST00000548728 219 ntBASIC4.28□□□□□ -1.72
TRERF1Q96PN7 AC133485.4-201ENST00000561835 220 ntBASIC4.28□□□□□ -1.72
TRERF1Q96PN7 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC4.28□□□□□ -1.72
TRERF1Q96PN7 AC138907.4-201ENST00000570107 226 ntBASIC4.28□□□□□ -1.72
TRERF1Q96PN7 U3.45-201ENST00000607547 219 ntBASIC4.28□□□□□ -1.72
TRERF1Q96PN7 uc_338.28-201ENST00000612082 187 ntBASIC4.28□□□□□ -1.72
TRERF1Q96PN7 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC4.28□□□□□ -1.72
TRERF1Q96PN7 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC4.28□□□□□ -1.72
TRERF1Q96PN7 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC4.28□□□□□ -1.72
TRERF1Q96PN7 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
TRERF1Q96PN7 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC4.28□□□□□ -1.72
TRERF1Q96PN7 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
TRERF1Q96PN7 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC4.27□□□□□ -1.73
TRERF1Q96PN7 AC118273.1-201ENST00000525324 3006 ntBASIC4.27□□□□□ -1.73
TRERF1Q96PN7 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC4.27□□□□□ -1.73
TRERF1Q96PN7 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
TRERF1Q96PN7 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
TRERF1Q96PN7 IPO8P1-201ENST00000455509 3109 ntBASIC4.27□□□□□ -1.73
TRERF1Q96PN7 U8.1-201ENST00000362843 134 ntBASIC4.27□□□□□ -1.73
TRERF1Q96PN7 U3.9-201ENST00000363823 204 ntBASIC4.27□□□□□ -1.73
TRERF1Q96PN7 SNORD87-201ENST00000364849 89 ntBASIC4.27□□□□□ -1.73
TRERF1Q96PN7 Y_RNA.341-201ENST00000365341 102 ntBASIC4.27□□□□□ -1.73
TRERF1Q96PN7 MIR548A3-201ENST00000385297 97 ntBASIC4.27□□□□□ -1.73
TRERF1Q96PN7 ATP5A1P2-201ENST00000412323 255 ntBASIC4.27□□□□□ -1.73
TRERF1Q96PN7 AC092047.1-201ENST00000424997 240 ntBASIC4.27□□□□□ -1.73
TRERF1Q96PN7 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC4.27□□□□□ -1.73
TRERF1Q96PN7 RPS29P24-201ENST00000486345 171 ntBASIC4.27□□□□□ -1.73
TRERF1Q96PN7 RPS29P20-201ENST00000489592 171 ntBASIC4.27□□□□□ -1.73
TRERF1Q96PN7 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC4.27□□□□□ -1.73
TRERF1Q96PN7 AC110768.1-201ENST00000509222 400 ntBASIC4.27□□□□□ -1.73
TRERF1Q96PN7 AC090142.3-201ENST00000519012 385 ntBASIC4.27□□□□□ -1.73
TRERF1Q96PN7 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC4.27□□□□□ -1.73
TRERF1Q96PN7 AL137849.1-201ENST00000604767 169 ntBASIC4.27□□□□□ -1.73
TRERF1Q96PN7 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
TRERF1Q96PN7 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
TRERF1Q96PN7 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
TRERF1Q96PN7 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC4.26□□□□□ -1.73
TRERF1Q96PN7 Y_RNA.333-201ENST00000365274 102 ntBASIC4.26□□□□□ -1.73
TRERF1Q96PN7 RNU1-73P-201ENST00000383971 164 ntBASIC4.26□□□□□ -1.73
TRERF1Q96PN7 MIR183-201ENST00000384958 110 ntBASIC4.26□□□□□ -1.73
TRERF1Q96PN7 RNA5SP424-201ENST00000390988 115 ntBASIC4.26□□□□□ -1.73
TRERF1Q96PN7 HMGN2P8-201ENST00000391458 268 ntBASIC4.26□□□□□ -1.73
TRERF1Q96PN7 AC004866.1-201ENST00000411748 78 ntBASIC4.26□□□□□ -1.73
TRERF1Q96PN7 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC4.26□□□□□ -1.73
TRERF1Q96PN7 RN7SL293P-201ENST00000481765 281 ntBASIC4.26□□□□□ -1.73
TRERF1Q96PN7 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC4.26□□□□□ -1.73
TRERF1Q96PN7 MIR4724-201ENST00000579485 89 ntBASIC4.26□□□□□ -1.73
TRERF1Q96PN7 AC012468.1-201ENST00000604888 430 ntBASIC4.26□□□□□ -1.73
TRERF1Q96PN7 FTX_3.1-201ENST00000610451 147 ntBASIC4.26□□□□□ -1.73
TRERF1Q96PN7 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
TRERF1Q96PN7 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
TRERF1Q96PN7 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
TRERF1Q96PN7 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
TRERF1Q96PN7 USP8P1-201ENST00000494673 3183 ntBASIC4.25□□□□□ -1.73
TRERF1Q96PN7 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
TRERF1Q96PN7 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC4.25□□□□□ -1.73
TRERF1Q96PN7 Y_RNA.116-201ENST00000363292 103 ntBASIC4.25□□□□□ -1.73
TRERF1Q96PN7 Y_RNA.388-201ENST00000383919 113 ntBASIC4.25□□□□□ -1.73
TRERF1Q96PN7 MIR218-2-201ENST00000385006 110 ntBASIC4.25□□□□□ -1.73
TRERF1Q96PN7 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC4.25□□□□□ -1.73
TRERF1Q96PN7 RNU6-710P-201ENST00000410424 105 ntBASIC4.25□□□□□ -1.73
TRERF1Q96PN7 RNU4-43P-201ENST00000410628 137 ntBASIC4.25□□□□□ -1.73
TRERF1Q96PN7 Y_RNA.622-201ENST00000411091 108 ntBASIC4.25□□□□□ -1.73
TRERF1Q96PN7 AC004386.2-201ENST00000441858 148 ntBASIC4.25□□□□□ -1.73
TRERF1Q96PN7 AL031737.1-201ENST00000450125 223 ntBASIC4.25□□□□□ -1.73
TRERF1Q96PN7 PRSS3P4-201ENST00000453323 162 ntBASIC4.25□□□□□ -1.73
TRERF1Q96PN7 AL645939.1-201ENST00000453429 797 ntBASIC4.25□□□□□ -1.73
TRERF1Q96PN7 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC4.25□□□□□ -1.73
TRERF1Q96PN7 S100A11P1-201ENST00000477525 312 ntBASIC4.25□□□□□ -1.73
TRERF1Q96PN7 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC4.25□□□□□ -1.73
TRERF1Q96PN7 RNU6-1231P-201ENST00000517185 103 ntBASIC4.25□□□□□ -1.73
TRERF1Q96PN7 CKS1BP7-201ENST00000522230 235 ntBASIC4.25□□□□□ -1.73
TRERF1Q96PN7 AC011471.1-201ENST00000585766 187 ntBASIC4.25□□□□□ -1.73
TRERF1Q96PN7 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC4.25□□□□□ -1.73
TRERF1Q96PN7 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
TRERF1Q96PN7 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
TRERF1Q96PN7 MIR367-201ENST00000362299 68 ntBASIC4.24□□□□□ -1.73
TRERF1Q96PN7 Y_RNA.114-201ENST00000363265 113 ntBASIC4.24□□□□□ -1.73
TRERF1Q96PN7 Y_RNA.243-201ENST00000364481 109 ntBASIC4.24□□□□□ -1.73
TRERF1Q96PN7 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
TRERF1Q96PN7 SNORA20B-201ENST00000384220 132 ntBASIC4.24□□□□□ -1.73
TRERF1Q96PN7 SNORA48.5-201ENST00000391143 135 ntBASIC4.24□□□□□ -1.73
TRERF1Q96PN7 MIR208B-201ENST00000401172 77 ntBASIC4.24□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 121.4 ms